Snrk (SNF related kinase) - Rat Genome Database

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Gene: Snrk (SNF related kinase) Mus musculus
Analyze
Symbol: Snrk
Name: SNF related kinase
RGD ID: 69661
MGI Page MGI
Description: Predicted to enable ATP binding activity; magnesium ion binding activity; and protein serine/threonine kinase activity. Predicted to be involved in intracellular signal transduction and protein phosphorylation. Predicted to act upstream of or within phosphorylation. Predicted to be located in nucleus. Is expressed in several structures, including central nervous system; gut; heart and pericardium; hemolymphoid system; and retina. Orthologous to human SNRK (SNF related kinase).
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 2010012F07Rik; AI448042; AW547029; E030034B15; MGC28970; mKIAA0096; R74830; S; SNF-related serine/threonine-protein kinase; SNF1-related kinase
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm17934  
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399121,946,332 - 121,998,768 (+)NCBIGRCm39mm39
GRCm39 Ensembl9121,946,332 - 121,998,768 (+)Ensembl
GRCm389122,117,266 - 122,169,702 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9122,117,266 - 122,169,702 (+)EnsemblGRCm38mm10GRCm38
MGSCv379122,026,384 - 122,078,820 (+)NCBIGRCm37mm9NCBIm37
MGSCv369121,980,600 - 122,018,397 (+)NCBImm8
Celera9122,590,482 - 122,642,516 (+)NCBICelera
Cytogenetic Map9F4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(S)-nicotine  (EXP)
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP,ISO)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-ethoxyethanol  (ISO)
2-methoxyethanol  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
4-hydroxyphenyl retinamide  (EXP)
6-propyl-2-thiouracil  (ISO)
aflatoxin B1  (ISO)
ammonium chloride  (ISO)
benzo[a]pyrene  (ISO)
beta-naphthoflavone  (EXP)
bisphenol A  (EXP,ISO)
calcidiol  (ISO)
calcitriol  (ISO)
carbon nanotube  (EXP)
ciglitazone  (ISO)
cisplatin  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (EXP)
dibutyl phthalate  (ISO)
dorsomorphin  (ISO)
endosulfan  (ISO)
ethanol  (EXP)
ethyl methanesulfonate  (ISO)
folic acid  (EXP)
formaldehyde  (ISO)
Genipin  (EXP)
gentamycin  (ISO)
kainic acid  (EXP)
lead(0)  (ISO)
lead(2+)  (ISO)
lipopolysaccharide  (EXP)
methamphetamine  (EXP)
methyl methanesulfonate  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (EXP)
nicotine  (EXP)
nitroglycerin  (ISO)
ozone  (EXP)
panobinostat  (ISO)
paracetamol  (EXP)
PCB138  (EXP)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP)
poly(I:C)  (ISO)
progesterone  (ISO)
SB 431542  (ISO)
sodium arsenate  (EXP)
sodium arsenite  (EXP)
sulforaphane  (EXP)
testosterone  (EXP)
tetrachloromethane  (EXP,ISO)
trichloroethene  (EXP)
triptonide  (EXP)
troglitazone  (EXP)
tungsten  (EXP)
urethane  (ISO)
valproic acid  (EXP,ISO)
zinc atom  (ISO)
zinc sulfate  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (ISO)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:8889548   PMID:9927192   PMID:10198162   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12234663   PMID:12477932   PMID:14681479   PMID:15226823   PMID:15489334  
PMID:15582152   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16602821   PMID:21677750   PMID:21873635   PMID:23520131   PMID:25053427   PMID:25505152   PMID:27780848   PMID:28117339  
PMID:29242271   PMID:29298809   PMID:31086184   PMID:31420304   PMID:31718444   PMID:32325033  


Genomics

Comparative Map Data
Snrk
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399121,946,332 - 121,998,768 (+)NCBIGRCm39mm39
GRCm39 Ensembl9121,946,332 - 121,998,768 (+)Ensembl
GRCm389122,117,266 - 122,169,702 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9122,117,266 - 122,169,702 (+)EnsemblGRCm38mm10GRCm38
MGSCv379122,026,384 - 122,078,820 (+)NCBIGRCm37mm9NCBIm37
MGSCv369121,980,600 - 122,018,397 (+)NCBImm8
Celera9122,590,482 - 122,642,516 (+)NCBICelera
Cytogenetic Map9F4NCBI
SNRK
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl343,286,512 - 43,424,764 (+)EnsemblGRCh38hg38GRCh38
GRCh38343,286,512 - 43,351,143 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37343,328,032 - 43,392,635 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36343,303,008 - 43,367,639 (+)NCBINCBI36hg18NCBI36
Build 34343,303,099 - 43,367,634NCBI
Celera343,265,488 - 43,330,125 (+)NCBI
Cytogenetic Map3p22.1NCBI
HuRef343,370,774 - 43,435,413 (+)NCBIHuRef
CHM1_1343,277,962 - 43,342,638 (+)NCBICHM1_1
Snrk
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.28121,779,704 - 121,833,949 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl8121,793,302 - 121,832,323 (+)Ensembl
Rnor_6.08130,749,806 - 130,805,225 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8130,749,838 - 130,803,597 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08129,919,623 - 129,972,947 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48121,958,351 - 121,968,989 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1X105,608,968 - 105,611,769 (-)NCBI
Celera8120,917,078 - 120,956,102 (+)NCBICelera
Cytogenetic Map8q32NCBI
Snrk
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542027,712,967 - 27,754,720 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542027,710,536 - 27,754,682 (-)NCBIChiLan1.0ChiLan1.0
SNRK
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1344,244,453 - 44,305,648 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl344,244,453 - 44,305,648 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0343,179,640 - 43,244,364 (+)NCBIMhudiblu_PPA_v0panPan3
SNRK
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1232,909,311 - 2,966,098 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl232,909,298 - 2,965,508 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha232,951,537 - 3,009,784 (-)NCBI
ROS_Cfam_1.0233,163,040 - 3,221,277 (-)NCBI
UMICH_Zoey_3.1233,003,099 - 3,061,359 (-)NCBI
UNSW_CanFamBas_1.0233,128,311 - 3,186,532 (-)NCBI
UU_Cfam_GSD_1.0233,101,885 - 3,160,134 (-)NCBI
Snrk
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118199,558,707 - 199,603,641 (-)NCBI
SpeTri2.0NW_0049366951,911,042 - 1,957,192 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNRK
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1326,604,033 - 26,734,026 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11326,669,208 - 26,724,466 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21329,344,702 - 29,400,039 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SNRK
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1224,726,981 - 4,792,618 (+)NCBIChlSab1.1chlSab2
ChlSab1.1224,726,981 - 4,792,618 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl224,741,622 - 4,790,037 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666041162,403,838 - 162,469,631 (-)NCBIVero_WHO_p1.0
Snrk
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473076,621,973 - 76,687,062 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
AW547029  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map9F4UniSTS
Whitehead/MRC_RH91208.11UniSTS
MDB0137  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389122,167,792 - 122,167,989UniSTSGRCm38
GRCm3836,136,524 - 6,136,721UniSTSGRCm38
MGSCv379122,076,910 - 122,077,107UniSTSGRCm37
MGSCv3736,136,524 - 6,136,721UniSTSGRCm37
Celera9122,640,606 - 122,640,803UniSTS
Celera36,202,592 - 6,202,789UniSTS
Cytogenetic Map9F4UniSTS
Cytogenetic Map3A1UniSTS
Whitehead_YAC9 UniSTS
AI448042  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389122,167,908 - 122,167,987UniSTSGRCm38
GRCm3836,136,526 - 6,136,605UniSTSGRCm38
MGSCv379122,077,026 - 122,077,105UniSTSGRCm37
MGSCv3736,136,526 - 6,136,605UniSTSGRCm37
Celera9122,640,722 - 122,640,801UniSTS
Celera36,202,594 - 6,202,673UniSTS
Cytogenetic Map9F4UniSTS
Cytogenetic Map3A1UniSTS
Whitehead/MRC_RH91224.22UniSTS
RH125114  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389122,167,919 - 122,168,000UniSTSGRCm38
GRCm3836,136,513 - 6,136,594UniSTSGRCm38
MGSCv379122,077,037 - 122,077,118UniSTSGRCm37
MGSCv3736,136,513 - 6,136,594UniSTSGRCm37
Celera9122,640,733 - 122,640,814UniSTS
Celera36,202,581 - 6,202,662UniSTS
Cytogenetic Map9F4UniSTS
Cytogenetic Map3A1UniSTS
Snrk  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389122,167,823 - 122,167,976UniSTSGRCm38
GRCm3836,136,537 - 6,136,690UniSTSGRCm38
MGSCv3736,136,537 - 6,136,690UniSTSGRCm37
MGSCv379122,076,941 - 122,077,094UniSTSGRCm37
Celera9122,640,637 - 122,640,790UniSTS
Celera36,202,605 - 6,202,758UniSTS
Cytogenetic Map9F4UniSTS
Cytogenetic Map3A1UniSTS
cM Map1122.0UniSTS
cM Map9 UniSTS
Snrk  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map9F4UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989284925123284925Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989412277123412396Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989563342123563342Mouse
12910770Splic1_mspleen iron content 1 (mouse)991413879124595110Mouse
12910772Lvic6_mliver iron content 6 (mouse)991413879124595110Mouse
12910773Splic3_mspleen iron content 3 (mouse)991413879124595110Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991641084124595110Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991641084124595110Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991641084124595110Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991641084124595110Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991641084124595110Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991641084124595110Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991683173124595110Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991683173124595110Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991683173124595110Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993762590124595110Mouse
1301484Bwq6_mbody weight (mouse)Not determined993762590124595110Mouse
14746992Manh67_mmandible shape 67 (mouse)994036768124595110Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996917590124595110Mouse
1301297Lcho1_mliver cholesterol 1 (mouse)Not determined9101060861124595110Mouse
1357627Tgq2_mtriglyceride QTL 2 (mouse)Not determined9102000187124595110Mouse
1357648Obq18_mobesity QTL 18 (mouse)Not determined9102000187124595110Mouse
1301789Pbwg4_mpostnatal body weight growth 4 (mouse)Not determined9103289445124595110Mouse
10412290Pvacm1l_mplasma vascular cell adhesion molecule 1 levels (mouse)Not determined9103289445124595110Mouse
12879896Berr3_mberghei resistance locus 3 (mouse)9103289445124595110Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2230
Count of miRNA genes:753
Interacting mature miRNAs:995
Transcripts:ENSMUST00000118886, ENSMUST00000119215, ENSMUST00000120173, ENSMUST00000131169, ENSMUST00000134949, ENSMUST00000139181, ENSMUST00000142784, ENSMUST00000145384, ENSMUST00000146832, ENSMUST00000151872
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001164572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_133741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC120394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF387809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI842097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK008206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK082185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK182697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217641 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC020189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC094658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC116410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC150742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ079755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000118886   ⟹   ENSMUSP00000114132
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9121,946,366 - 121,998,768 (+)Ensembl
GRCm38.p6 Ensembl9122,117,300 - 122,169,702 (+)Ensembl
RefSeq Acc Id: ENSMUST00000119215   ⟹   ENSMUSP00000113906
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9121,946,332 - 121,986,292 (+)Ensembl
GRCm38.p6 Ensembl9122,117,266 - 122,157,226 (+)Ensembl
RefSeq Acc Id: ENSMUST00000120173   ⟹   ENSMUSP00000112919
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9121,946,369 - 121,998,768 (+)Ensembl
GRCm38.p6 Ensembl9122,117,303 - 122,169,702 (+)Ensembl
RefSeq Acc Id: ENSMUST00000131169
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9121,989,138 - 121,995,457 (+)Ensembl
GRCm38.p6 Ensembl9122,160,072 - 122,166,391 (+)Ensembl
RefSeq Acc Id: ENSMUST00000134949   ⟹   ENSMUSP00000119878
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9121,946,413 - 121,995,455 (+)Ensembl
GRCm38.p6 Ensembl9122,117,347 - 122,166,389 (+)Ensembl
RefSeq Acc Id: ENSMUST00000139181   ⟹   ENSMUSP00000120582
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9121,946,376 - 121,966,350 (+)Ensembl
GRCm38.p6 Ensembl9122,117,310 - 122,137,284 (+)Ensembl
RefSeq Acc Id: ENSMUST00000142784
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9121,946,818 - 121,966,042 (+)Ensembl
GRCm38.p6 Ensembl9122,117,752 - 122,136,976 (+)Ensembl
RefSeq Acc Id: ENSMUST00000145384
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9121,995,810 - 121,996,541 (+)Ensembl
GRCm38.p6 Ensembl9122,166,744 - 122,167,475 (+)Ensembl
RefSeq Acc Id: ENSMUST00000146832   ⟹   ENSMUSP00000117994
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9121,946,349 - 121,966,242 (+)Ensembl
GRCm38.p6 Ensembl9122,117,283 - 122,137,176 (+)Ensembl
RefSeq Acc Id: ENSMUST00000151872
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9121,992,935 - 121,995,556 (+)Ensembl
GRCm38.p6 Ensembl9122,163,869 - 122,166,490 (+)Ensembl
RefSeq Acc Id: ENSMUST00000215432
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9121,946,384 - 121,963,142 (+)Ensembl
GRCm38.p6 Ensembl9122,117,318 - 122,134,076 (+)Ensembl
RefSeq Acc Id: ENSMUST00000217631
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9121,946,370 - 121,993,017 (+)Ensembl
GRCm38.p6 Ensembl9122,117,304 - 122,163,951 (+)Ensembl
RefSeq Acc Id: NM_001164572   ⟹   NP_001158044
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399121,946,332 - 121,998,768 (+)NCBI
GRCm389122,117,266 - 122,169,702 (+)NCBI
MGSCv379122,026,384 - 122,078,820 (+)RGD
Celera9122,590,482 - 122,642,516 (+)NCBI
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001357774   ⟹   NP_001344703
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399121,946,332 - 121,998,768 (+)NCBI
GRCm389122,117,266 - 122,169,702 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001357775   ⟹   NP_001344704
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399121,946,332 - 121,998,768 (+)NCBI
GRCm389122,117,266 - 122,169,702 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001357776   ⟹   NP_001344705
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399121,946,525 - 121,998,768 (+)NCBI
GRCm389122,117,459 - 122,169,702 (+)NCBI
Sequence:
RefSeq Acc Id: NM_133741   ⟹   NP_598502
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399121,946,332 - 121,998,768 (+)NCBI
GRCm389122,117,266 - 122,169,702 (+)NCBI
MGSCv379122,026,384 - 122,078,820 (+)RGD
Celera9122,590,482 - 122,642,516 (+)NCBI
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006511999   ⟹   XP_006512062
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399121,946,337 - 121,998,765 (+)NCBI
GRCm389122,117,305 - 122,169,699 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006512000   ⟹   XP_006512063
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399121,946,337 - 121,998,765 (+)NCBI
GRCm389122,117,279 - 122,169,699 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006512002   ⟹   XP_006512065
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399121,946,337 - 121,998,765 (+)NCBI
GRCm389122,117,279 - 122,169,699 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036154754   ⟹   XP_036010647
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399121,946,599 - 121,998,765 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036154755   ⟹   XP_036010648
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399121,947,234 - 121,998,765 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036154756   ⟹   XP_036010649
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399121,947,234 - 121,998,765 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_598502   ⟸   NM_133741
- UniProtKB: Q8VDU5 (UniProtKB/Swiss-Prot),   B9EK90 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001158044   ⟸   NM_001164572
- UniProtKB: Q8VDU5 (UniProtKB/Swiss-Prot),   B9EK90 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006512063   ⟸   XM_006512000
- Peptide Label: isoform X1
- UniProtKB: Q8VDU5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006512065   ⟸   XM_006512002
- Peptide Label: isoform X1
- UniProtKB: Q8VDU5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006512062   ⟸   XM_006511999
- Peptide Label: isoform X1
- UniProtKB: Q8VDU5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001344703   ⟸   NM_001357774
RefSeq Acc Id: NP_001344704   ⟸   NM_001357775
RefSeq Acc Id: NP_001344705   ⟸   NM_001357776
RefSeq Acc Id: ENSMUSP00000120582   ⟸   ENSMUST00000139181
RefSeq Acc Id: ENSMUSP00000113906   ⟸   ENSMUST00000119215
RefSeq Acc Id: ENSMUSP00000114132   ⟸   ENSMUST00000118886
RefSeq Acc Id: ENSMUSP00000117994   ⟸   ENSMUST00000146832
RefSeq Acc Id: ENSMUSP00000119878   ⟸   ENSMUST00000134949
RefSeq Acc Id: ENSMUSP00000112919   ⟸   ENSMUST00000120173
RefSeq Acc Id: XP_036010647   ⟸   XM_036154754
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036010648   ⟸   XM_036154755
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036010649   ⟸   XM_036154756
- Peptide Label: isoform X1
Protein Domains
Protein kinase   UBA

Promoters
RGD ID:6845191
Promoter ID:MM_KWN:59229
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Liver,   Lung
Transcripts:UC009SEQ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369122,040,201 - 122,041,202 (+)MPROMDB
RGD ID:6845187
Promoter ID:MM_KWN:59230
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:OTTMUST00000067854
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369122,069,001 - 122,069,501 (+)MPROMDB
RGD ID:6845189
Promoter ID:MM_KWN:59231
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Liver,   Lung
Transcripts:OTTMUST00000067855
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369122,072,406 - 122,073,362 (+)MPROMDB
RGD ID:6845193
Promoter ID:MM_KWN:59232
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   Brain,   Kidney,   Lung
Transcripts:OTTMUST00000067856
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369122,075,036 - 122,076,342 (+)MPROMDB
RGD ID:8671292
Promoter ID:EPDNEW_M13676
Type:initiation region
Name:Snrk_1
Description:Mus musculus SNF related kinase , transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389122,117,308 - 122,117,368EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:108104 AgrOrtholog
Ensembl Genes ENSMUSG00000038145 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000112919 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000113906 UniProtKB/TrEMBL
  ENSMUSP00000114132 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000117994 UniProtKB/TrEMBL
  ENSMUSP00000119878 UniProtKB/TrEMBL
  ENSMUSP00000120582 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000118886 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000119215 UniProtKB/TrEMBL
  ENSMUST00000120173 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000134949 UniProtKB/TrEMBL
  ENSMUST00000139181 UniProtKB/TrEMBL
  ENSMUST00000146832 UniProtKB/TrEMBL
InterPro Kinase-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ser/Thr_kinase_AS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:20623 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:108104 ENTREZGENE
NCBI Gene 20623 ENTREZGENE
Pfam Pkinase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Snrk PhenoGen
PROSITE PROTEIN_KINASE_ATP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN_KINASE_ST UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART S_TKc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF56112 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0AUN3_MOUSE UniProtKB/TrEMBL
  B9EK90 ENTREZGENE, UniProtKB/TrEMBL
  D3YVW4_MOUSE UniProtKB/TrEMBL
  D3YXV4_MOUSE UniProtKB/TrEMBL
  D3Z1F6_MOUSE UniProtKB/TrEMBL
  D3Z3V0_MOUSE UniProtKB/TrEMBL
  Q8VDU5 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q91WX6 UniProtKB/Swiss-Prot