Pick1 (protein interacting with C kinase 1) - Rat Genome Database

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Gene: Pick1 (protein interacting with C kinase 1) Mus musculus
Analyze
Symbol: Pick1
Name: protein interacting with C kinase 1
RGD ID: 69497
MGI Page MGI
Description: Enables protein C-terminus binding activity; protein kinase C binding activity; and signaling receptor binding activity. Involved in receptor clustering. Acts upstream of or within protein targeting. Located in several cellular components, including Golgi apparatus; perinuclear region of cytoplasm; and postsynaptic density. Is expressed in brain. Orthologous to human PICK1 (protein interacting with PRKCA 1); PARTICIPATES IN protein kinase C (PKC) signaling pathway; INTERACTS WITH (S)-nicotine; 1,2-dichloroethane; 17alpha-ethynylestradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: Prk; PRKCA-binding protein; Prkcabp; protein kinase C, alpha binding protein; protein kinase C-alpha-binding protein; protein that interacts with C kinase 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391579,113,373 - 79,133,666 (+)NCBIGRCm39mm39
GRCm39 Ensembl1579,113,373 - 79,133,684 (+)Ensembl
GRCm381579,229,140 - 79,249,466 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1579,229,173 - 79,249,484 (+)EnsemblGRCm38mm10GRCm38
MGSCv371579,059,604 - 79,079,896 (+)NCBIGRCm37mm9NCBIm37
MGSCv361579,057,068 - 79,076,715 (+)NCBImm8
Celera1581,348,804 - 81,369,231 (+)NCBICelera
Cytogenetic Map15E1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:7844141   PMID:8889548   PMID:9405395   PMID:9883737   PMID:10340301   PMID:10349636   PMID:10567402   PMID:10623590   PMID:10834841   PMID:11042159   PMID:11076861   PMID:11217851  
PMID:11278603   PMID:11343649   PMID:11739374   PMID:11931741   PMID:12065412   PMID:12399460   PMID:12477932   PMID:12578970   PMID:12826667   PMID:14610273   PMID:14730302   PMID:14976185  
PMID:15687262   PMID:15782199   PMID:15797551   PMID:15811349   PMID:16141072   PMID:16141073   PMID:16537572   PMID:16543133   PMID:16554470   PMID:16597715   PMID:16602821   PMID:16987237  
PMID:17452640   PMID:17553932   PMID:17610064   PMID:18032668   PMID:18077702   PMID:18191108   PMID:18367088   PMID:18641645   PMID:18716219   PMID:18799693   PMID:19071120   PMID:19258705  
PMID:19679075   PMID:20445062   PMID:20696523   PMID:20826761   PMID:21106762   PMID:21267068   PMID:21291534   PMID:21307255   PMID:21482355   PMID:21690291   PMID:21873635   PMID:23630453  
PMID:23630454   PMID:23864672   PMID:23918399   PMID:24068808   PMID:24069373   PMID:24100262   PMID:24358315   PMID:24498314   PMID:24713001   PMID:25047565   PMID:25100601   PMID:25547463  
PMID:25784538   PMID:25904794   PMID:26008737   PMID:26202810   PMID:26306493   PMID:26566795   PMID:26617735   PMID:26880306   PMID:26970394   PMID:27157267   PMID:27190058   PMID:27800545  
PMID:28731156   PMID:29298842   PMID:29305867   PMID:29471107   PMID:29911172   PMID:29987020   PMID:30194389   PMID:30279480   PMID:30402043   PMID:30699097   PMID:31735337   PMID:33207243  


Genomics

Comparative Map Data
Pick1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391579,113,373 - 79,133,666 (+)NCBIGRCm39mm39
GRCm39 Ensembl1579,113,373 - 79,133,684 (+)Ensembl
GRCm381579,229,140 - 79,249,466 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1579,229,173 - 79,249,484 (+)EnsemblGRCm38mm10GRCm38
MGSCv371579,059,604 - 79,079,896 (+)NCBIGRCm37mm9NCBIm37
MGSCv361579,057,068 - 79,076,715 (+)NCBImm8
Celera1581,348,804 - 81,369,231 (+)NCBICelera
Cytogenetic Map15E1NCBI
PICK1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2238,056,311 - 38,075,701 (+)EnsemblGRCh38hg38GRCh38
GRCh382238,056,311 - 38,075,704 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh372238,453,262 - 38,471,708 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362236,783,208 - 36,801,654 (+)NCBINCBI36hg18NCBI36
Build 342236,777,902 - 36,796,207NCBI
Celera2222,255,002 - 22,273,457 (+)NCBI
Cytogenetic Map22q13.1NCBI
HuRef2221,417,897 - 21,436,386 (+)NCBIHuRef
CHM1_12238,411,992 - 38,430,442 (+)NCBICHM1_1
Pick1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.27110,796,623 - 110,816,850 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl7110,797,117 - 110,816,848 (+)Ensembl
Rnor_6.07120,465,472 - 120,484,824 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7120,465,130 - 120,484,840 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07120,459,118 - 120,478,470 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47117,213,299 - 117,232,651 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.17117,247,528 - 117,266,879 (+)NCBI
Celera7107,131,151 - 107,150,407 (+)NCBICelera
Cytogenetic Map7q34NCBI
Pick1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541324,383,130 - 24,399,196 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541324,383,130 - 24,399,092 (+)NCBIChiLan1.0ChiLan1.0
LOC100972387
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12236,796,053 - 36,814,464 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2236,796,015 - 36,814,469 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02218,868,872 - 18,988,918 (+)NCBIMhudiblu_PPA_v0panPan3
PICK1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11026,595,301 - 26,614,170 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1026,595,768 - 26,613,756 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1026,550,611 - 26,569,400 (-)NCBI
ROS_Cfam_1.01027,387,103 - 27,406,123 (-)NCBI
UMICH_Zoey_3.11027,107,123 - 27,126,143 (-)NCBI
UNSW_CanFamBas_1.01027,418,687 - 27,437,706 (-)NCBI
UU_Cfam_GSD_1.01027,595,780 - 27,614,797 (-)NCBI
Pick1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494510,087,798 - 10,105,588 (-)NCBI
SpeTri2.0NW_0049364923,098,196 - 3,115,921 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PICK1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl59,808,450 - 9,889,930 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.159,808,444 - 9,829,677 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.257,208,317 - 7,225,652 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PICK1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11920,758,199 - 20,778,210 (+)NCBI
ChlSab1.1 Ensembl1920,759,960 - 20,779,514 (+)Ensembl
Vero_WHO_p1.0NW_023666045104,992,571 - 105,011,487 (-)NCBI
Pick1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247529,880,773 - 9,895,270 (-)NCBI


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226734Tibmd5_mtibia midshaft diameter 5, 10 week (mouse)15610000086800000Mouse
26884442Sklq6_mskull length QTL 6, 5 week (mouse)156100000100900000Mouse
27226777Tibl8_mtibia length 8, 5 week (mouse)15690000084700000Mouse
1301433Rapop5_mradiation-induced apoptosis 5 (mouse)Not determined15927293679590561Mouse
1357526Hyplip2_mhyperlipidemia 2 (mouse)Not determined1512402117102988123Mouse
26884425Cvht2_mcranial vault height 2, 5 week (mouse)1528800000102100000Mouse
1558985Eae32_mexperimental allergic encephalomyelitis susceptibility 32 (mouse)Not determined1532578270103517472Mouse
27226729Tibmd2_mtibia midshaft diameter 2, 5 week (mouse)153800000086800000Mouse
26884402Cvht9_mcranial vault height 9, 16 week (mouse)154230000095600000Mouse
1300644Fob3_mF-line obesity QTL 3 (mouse)11.3Not determined154414443889377036Mouse
1357756Alaa4_malopecia areata 4 (mouse)Not determined154651779780517996Mouse
10755515Amzn3_manatomical modifier of Zfp423 3 (mouse)154651779780517996Mouse
1301006Hfib1_mhepatic fibrogenesis 1 (mouse)Not determined154743448581434630Mouse
1301860Gct3_mgranulosa cell tumorigenesis 3 (mouse)Not determined154753774781537842Mouse
26884397Humsd5_mhumerus midshaft diameter 5, 10 week (mouse)154850000098500000Mouse
26884399Humsd1_mhumerus midshaft diameter 1, 5 week (mouse)1548500000101800000Mouse
1301429Pcir3_mperiosteal circumference 3 (mouse)Not determined154859351382593647Mouse
4142198Hbtq_mhabituation QTL (mouse)Not determined155128885985288984Mouse
10045637Heal27_mwound healing/regeneration 29 (mouse)Not determined155154651285546662Mouse
10412067Pain2_mpain 2 (mouse)Not determined155177349085773777Mouse
1302080Szs13_mseizure susceptibility 13 (mouse)Not determined155181398385822600Mouse
1301708Cocrb14_mcocaine related behavior 14 (mouse)Not determined155193466685934802Mouse
38501067Tip3_mtuberculosis immunophenotype 3, IFN-g level (mouse)155370000089700000Mouse
13504731Cath5_mcarotid atherosclerosis 5 (mouse)155491728088917280Mouse
1302074Bmd4_mbone mineral density 4 (mouse)Not determined1556323312103517472Mouse
27095936Ulnl4_mulna length 4, 5 week (mouse)155690000087800000Mouse
1300800Ses3_msalmonella enteritidis susceptibility 3 (mouse)Not determined155724515691245304Mouse
1357407Pfat4_mpredicted fat percentage 4 (mouse)8.6Body fat amountpredicted fat percentage155724515691245304Mouse
12880420V25Dq8_mvitamin D inactive form serum level QTL 8 (mouse)156170000095700000Mouse
1301601Faq9_mfluctuating asymmetry QTL 9 (mouse)Not determined156327970297279794Mouse
1558786Msq1_mMAV-1 susceptibility QTL 1 (mouse)Not determined156351779781202235Mouse
1302197Bhr2_mbronchial hyperresponsiveness 2 (mouse)Not determined1564434485103517472Mouse
4141135Cia35_mcollagen induced arthritis 35 (mouse)Not determined156492762598927745Mouse
1301119Drb7_mdopamine receptor binding 7 (mouse)Not determined156545237799456827Mouse
1301171Brm2_mbrachyury modifier 2 (mouse)Not determined156564117599641298Mouse
4141921Pstc3_mperiosteal circumference 3 (mouse)Not determined1567386497101386646Mouse
1300627Sluc26_msusceptibility to lung cancer 26 (mouse)Not determined1570461452104043685Mouse
1300726Pitm4_mprion incubation time 4 (mouse)Not determined1570465070104043685Mouse
1300648Dbsty4_mdiabesity 4 (mouse)Not determined1570465070104043685Mouse
14747011Mancz13_mmandible centroid size 13 (mouse)1572498466104043685Mouse
1302002Cocia2_mcocaine induced activation 2 (mouse)Not determined157250061080014977Mouse
12791003Aath8_maortic arch atherosclerosis 8 (mouse)1573545941104043685Mouse
15092079Igly6_mIgG glycosylation 6, GP6 (mouse)157422869182789955Mouse
13442492Mecth2_mmechanosensation threshold 2 (mouse)157479100079503000Mouse
1301472Pain1_mpain 1 (mouse)Not determined157544899790928982Mouse
1300851Heal4_mwound healing/regeneration 4 (mouse)Not determined1577629711104043685Mouse
15092080Igly7_mIgG glycosylation 7, GP10 (mouse)157791071982789955Mouse
4142060W3q6_mweight 3 weeks QTL 6 (mouse)Not determined78716903102993272Mouse
1357894Epfpq3_mepididymal fat percentage QTL 3 (mouse)Not determined1578716903102993272Mouse
14928306Manh79_mmandible shape 79 (mouse)1578949676104043685Mouse
12880411V125Dq11_mvitamin D active form serum level QTL 11 (mouse)1579000000104043685Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2062
Count of miRNA genes:620
Interacting mature miRNAs:765
Transcripts:ENSMUST00000018295, ENSMUST00000053926, ENSMUST00000113954, ENSMUST00000163571, ENSMUST00000165609, ENSMUST00000166155, ENSMUST00000166417, ENSMUST00000168513, ENSMUST00000169548, ENSMUST00000171365, ENSMUST00000171581, ENSMUST00000172162
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001045558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_008837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AI385692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI893973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK050224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK090155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL591921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC023088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC030363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC030880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC030912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC040824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC048788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE652516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU057774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU698586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA468666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD363874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK791908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z46720 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000018295   ⟹   ENSMUSP00000018295
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1579,113,582 - 79,133,666 (+)Ensembl
GRCm38.p6 Ensembl1579,229,382 - 79,249,466 (+)Ensembl
RefSeq Acc Id: ENSMUST00000113954
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1579,129,474 - 79,131,934 (+)Ensembl
GRCm38.p6 Ensembl1579,245,274 - 79,247,734 (+)Ensembl
RefSeq Acc Id: ENSMUST00000163571   ⟹   ENSMUSP00000128126
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1579,113,373 - 79,133,684 (+)Ensembl
GRCm38.p6 Ensembl1579,229,173 - 79,249,484 (+)Ensembl
RefSeq Acc Id: ENSMUST00000165609
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1579,113,611 - 79,132,163 (+)Ensembl
GRCm38.p6 Ensembl1579,229,411 - 79,247,963 (+)Ensembl
RefSeq Acc Id: ENSMUST00000166155   ⟹   ENSMUSP00000129468
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1579,113,902 - 79,133,529 (+)Ensembl
GRCm38.p6 Ensembl1579,229,702 - 79,249,329 (+)Ensembl
RefSeq Acc Id: ENSMUST00000166417
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1579,113,658 - 79,118,546 (+)Ensembl
GRCm38.p6 Ensembl1579,229,458 - 79,234,346 (+)Ensembl
RefSeq Acc Id: ENSMUST00000168513
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1579,127,168 - 79,131,832 (+)Ensembl
GRCm38.p6 Ensembl1579,242,968 - 79,247,632 (+)Ensembl
RefSeq Acc Id: ENSMUST00000169548
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1579,113,616 - 79,132,163 (+)Ensembl
GRCm38.p6 Ensembl1579,229,416 - 79,247,963 (+)Ensembl
RefSeq Acc Id: ENSMUST00000171365
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1579,113,705 - 79,125,584 (+)Ensembl
GRCm38.p6 Ensembl1579,229,505 - 79,241,384 (+)Ensembl
RefSeq Acc Id: ENSMUST00000171581
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1579,130,535 - 79,133,666 (+)Ensembl
GRCm38.p6 Ensembl1579,246,335 - 79,249,466 (+)Ensembl
RefSeq Acc Id: ENSMUST00000172162
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1579,129,077 - 79,131,800 (+)Ensembl
GRCm38.p6 Ensembl1579,244,877 - 79,247,600 (+)Ensembl
RefSeq Acc Id: NM_001045558   ⟹   NP_001039023
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391579,113,582 - 79,133,666 (+)NCBI
GRCm381579,229,382 - 79,249,466 (+)NCBI
MGSCv371579,059,604 - 79,079,896 (+)RGD
Celera1581,348,803 - 81,369,231 (+)NCBI
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_008837   ⟹   NP_032863
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391579,113,373 - 79,133,666 (+)NCBI
GRCm381579,229,173 - 79,249,466 (+)NCBI
MGSCv371579,059,604 - 79,079,896 (+)RGD
Celera1581,348,803 - 81,369,231 (+)NCBI
cM Map15 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_032863   ⟸   NM_008837
- UniProtKB: E9PUZ5 (UniProtKB/TrEMBL),   Q8C1W2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001039023   ⟸   NM_001045558
- UniProtKB: E9PUZ5 (UniProtKB/TrEMBL),   Q8C1W2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000128126   ⟸   ENSMUST00000163571
RefSeq Acc Id: ENSMUSP00000129468   ⟸   ENSMUST00000166155
RefSeq Acc Id: ENSMUSP00000018295   ⟸   ENSMUST00000018295
Protein Domains
AH   Galectin   PDZ

Promoters
RGD ID:6826327
Promoter ID:MM_KWN:19052
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_4Hour,   Kidney,   MEF_B6
Transcripts:ENSMUST00000053926,   NM_001045558,   NM_008837
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361579,059,471 - 79,059,971 (+)MPROMDB
RGD ID:8684328
Promoter ID:EPDNEW_M20195
Type:multiple initiation site
Name:Pick1_2
Description:Mus musculus protein interacting with C kinase 1 , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M20196  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381579,229,159 - 79,229,219EPDNEW
RGD ID:8684330
Promoter ID:EPDNEW_M20196
Type:initiation region
Name:Pick1_1
Description:Mus musculus protein interacting with C kinase 1 , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M20195  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381579,229,391 - 79,229,451EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:894645 AgrOrtholog
Ensembl Genes ENSMUSG00000068206 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000018295 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000128126 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000129468 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000018295 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000163571 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000166155 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1270.60 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.30.42.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro AH/BAR_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  AH_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Arfaptin_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ConA-like_subgrp UniProtKB/TrEMBL
  Galectin_CRD UniProtKB/TrEMBL
  PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PICK1_BAR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:18693 UniProtKB/TrEMBL
MGD MGI:894645 ENTREZGENE
NCBI Gene 18693 ENTREZGENE
PANTHER PTHR12141 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Arfaptin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Gal-bind_lectin UniProtKB/TrEMBL
  PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Pick1 PhenoGen
PROSITE GALECTIN UniProtKB/TrEMBL
  PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PS50870 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART Arfaptin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Gal-bind_lectin UniProtKB/TrEMBL
  PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP ConA_like_lec_gl UniProtKB/TrEMBL
  SSF103657 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF50156 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt E9PUZ5 ENTREZGENE, UniProtKB/TrEMBL
  PICK1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q80VC8_MOUSE UniProtKB/TrEMBL
  Q8C1W2 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary E9PY04 UniProtKB/Swiss-Prot