Pick1 (protein interacting with C kinase 1)

Gene: Pick1 (protein interacting with C kinase 1) Mus musculus

Analyze

Symbol:

Pick1

Name:

protein interacting with C kinase 1

RGD ID:

69497

MGI Page

MGI

Description:

Enables protein kinase C binding activity and signaling receptor binding activity. Involved in receptor clustering. Acts upstream of or within protein targeting. Located in several cellular components, including Golgi apparatus; perinuclear region of cytoplasm; and postsynaptic density. Is expressed in brain; cerebellum Purkinje cell layer; cerebellum molecular layer; cerebral cortex ventricular layer; and cortical plate. Orthologous to human PICK1 (protein interacting with PRKCA 1).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Prk; PRKCA-binding protein; Prkcabp; protein kinase C, alpha binding protein; protein kinase C-alpha-binding protein; protein that interacts with C kinase 1

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PICK1 (protein interacting with PRKCA 1)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Pick1 (protein interacting with PRKCA 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Pick1 (protein interacting with PRKCA 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	POLR2F (RNA polymerase II, I and III subunit F)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PICK1 (protein interacting with PRKCA 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Pick1 (protein interacting with PRKCA 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PICK1 (protein interacting with PRKCA 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PICK1 (protein interacting with PRKCA 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Pick1 (protein interacting with PRKCA 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Pick1 (protein interacting with PRKCA 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	PICK1 (protein interacting with PRKCA 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	pick1 (protein interacting with prkca 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid\|ZFIN)
Caenorhabditis elegans (roundworm):	Y57G11C.22	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	PICK1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	pick1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	79,113,373 - 79,133,666 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	79,113,373 - 79,133,684 (+)	Ensembl		GRCm39 Ensembl
GRCm38	15	79,229,140 - 79,249,466 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	79,229,173 - 79,249,484 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	79,059,604 - 79,079,896 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	15	79,057,068 - 79,076,715 (+)	NCBI		MGSCv36	mm8
Celera	15	81,348,804 - 81,369,231 (+)	NCBI		Celera
Cytogenetic Map	15	E1	NCBI
cM Map	15	37.7	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

adenylosuccinase lyase deficiency (ISO)

amphetamine abuse (ISO)

Emery-Dreifuss muscular dystrophy (ISO)

genetic disease (ISO)

myoclonic dystonia 26 (ISO)

neurodegeneration with brain iron accumulation 2A (ISO)

substance-induced psychosis (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

(S)-nicotine (EXP)

1,2-dichloroethane (EXP)

17alpha-ethynylestradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (ISO)

2,6-dinitrotoluene (ISO)

3-chloropropane-1,2-diol (ISO)

3-nitropropanoic acid (ISO)

4,4'-sulfonyldiphenol (ISO)

ammonium chloride (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

atrazine (ISO)

benzo[a]pyrene (EXP,ISO)

bisphenol A (ISO)

bisphenol F (ISO)

Brodifacoum (ISO)

calcium atom (ISO)

calcium(0) (ISO)

CGP 52608 (ISO)

cisplatin (ISO)

diazinon (ISO)

dibutyl phthalate (EXP)

doxorubicin (ISO)

excitatory amino acid agonist (ISO)

fenthion (EXP)

gentamycin (ISO)

kainic acid (EXP)

methamphetamine (EXP,ISO)

methidathion (EXP)

methotrexate (EXP)

nicotine (EXP)

paracetamol (ISO)

pirinixic acid (EXP)

potassium chromate (ISO)

tamoxifen (EXP)

temozolomide (ISO)

topiramate (ISO)

triptonide (EXP)

vanadium atom (ISO)

vanadium(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to decreased oxygen levels (ISO)

cellular response to glucose starvation (ISO)

dendritic spine maintenance (IBA,ISO)

dendritic spine organization (ISO)

glial cell development (ISO)

intracellular protein transport (IBA)

intracellular signal transduction (NAS)

long-term synaptic depression (ISO)

monoamine transport (ISO)

negative regulation of Arp2/3 complex-mediated actin nucleation (ISO)

negative regulation of gene expression (ISO)

positive regulation of receptor internalization (IBA,ISO)

protein kinase C-activating G protein-coupled receptor signaling pathway (ISO)

protein targeting (IDA)

receptor clustering (IBA,IDA,ISO)

regulation of Arp2/3 complex-mediated actin nucleation (IBA)

regulation of insulin secretion (ISO)

regulation of kainate selective glutamate receptor activity (ISO)

regulation of postsynaptic neurotransmitter receptor internalization (ISO)

regulation of synapse structure or activity (NAS)

Cellular Component

cytoplasm (IDA,ISO)

cytoskeleton (IEA)

cytosol (ISO)

dendrite (ISO)

dendritic spine (ISO)

glutamatergic synapse (ISO)

Golgi apparatus (IDA)

membrane (IEA)

mitochondrion (IDA)

neuron projection (IBA,ISO)

perinuclear region of cytoplasm (IDA,ISO)

plasma membrane (ISO)

postsynaptic density (IBA,IDA,ISO)

postsynaptic early endosome (IBA,ISO)

postsynaptic endocytic zone (ISO)

postsynaptic specialization (ISO)

presynaptic membrane (ISO)

protein-containing complex (ISO)

synapse (IDA,ISO)

synaptic vesicle (IBA,ISO)

trans-Golgi network membrane (IBA)

Molecular Function

actin binding (IEA)

actin filament binding (ISO)

Arp2/3 complex binding (ISO)

cytoskeletal protein binding (ISO)

G protein-coupled glutamate receptor binding (ISO)

G protein-coupled receptor binding (ISO)

identical protein binding (ISO)

ionotropic glutamate receptor binding (ISO)

membrane curvature sensor activity (ISO)

metal ion binding (IEA)

phospholipid binding (IBA)

protein binding (IPI,ISO)

protein domain specific binding (ISO)

protein kinase C binding (IBA,IPI,ISO)

signaling receptor binding (IPI)

SNAP receptor activity (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

protein kinase C (PKC) signaling pathway (ISO)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal acrosome morphology (IAGP)

abnormal sperm mitochondrial sheath morphology (IAGP)

abnormal sperm nucleus morphology (IAGP)

abnormal spermiogenesis (IAGP)

absent long-term depression (IAGP)

asthenozoospermia (IAGP)

decreased testis weight (IAGP)

globozoospermia (IAGP)

impaired synaptic plasticity (IAGP)

increased male germ cell apoptosis (IAGP)

male infertility (IAGP)

oligozoospermia (IAGP)

small seminiferous tubules (IAGP)

small testis (IAGP)

teratozoospermia (IAGP)

References

References - curated

#	Reference Title	Reference Citation
1.	Mitogen-stimulated TIS21 protein interacts with a protein-kinase-Calpha-binding protein rPICK1.	Lin WJ, etal., Biochem J 2001 Mar 15;354(Pt 3):635-43.
2.	Electronic Transfer of Homolog Data	MGD and Homologene mouse data transfer
3.	MGDs mouse GO annotations	MGD data from the GO Consortium
4.	MGD IEA	MGD IEA
5.	Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6.	Mouse MP Annotation Import Pipeline	RGD automated import pipeline
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
8.	Protein scaffolds, lipid domains and substrate recognition in protein kinase C function: implications for rational drug design.	Walker JW Handb Exp Pharmacol. 2008;(186):185-203.

Additional References at PubMed

PMID:7844141	PMID:8889548	PMID:9405395	PMID:9883737	PMID:10340301	PMID:10349636	PMID:10567402	PMID:10623590	PMID:10834841	PMID:11042159	PMID:11076861	PMID:11217851
PMID:11278603	PMID:11343649	PMID:11739374	PMID:11931741	PMID:12065412	PMID:12399460	PMID:12477932	PMID:12578970	PMID:12826667	PMID:14610273	PMID:14730302	PMID:14976185
PMID:15687262	PMID:15782199	PMID:15797551	PMID:15811349	PMID:16141072	PMID:16141073	PMID:16537572	PMID:16543133	PMID:16554470	PMID:16597715	PMID:16602821	PMID:16987237
PMID:17452640	PMID:17553932	PMID:17610064	PMID:18032668	PMID:18077702	PMID:18191108	PMID:18367088	PMID:18641645	PMID:18716219	PMID:18799693	PMID:19071120	PMID:19258705
PMID:19679075	PMID:20445062	PMID:20696523	PMID:20826761	PMID:21106762	PMID:21267068	PMID:21291534	PMID:21307255	PMID:21482355	PMID:21690291	PMID:21873635	PMID:23630453
PMID:23630454	PMID:23864672	PMID:23918399	PMID:24068808	PMID:24069373	PMID:24100262	PMID:24358315	PMID:24498314	PMID:24713001	PMID:25047565	PMID:25100601	PMID:25547463
PMID:25784538	PMID:25904794	PMID:26008737	PMID:26202810	PMID:26306493	PMID:26566795	PMID:26617735	PMID:26880306	PMID:26970394	PMID:27157267	PMID:27190058	PMID:27800545
PMID:28731156	PMID:29298842	PMID:29305867	PMID:29471107	PMID:29911172	PMID:29987020	PMID:30194389	PMID:30279480	PMID:30402043	PMID:30699097	PMID:31735337	PMID:33207243
PMID:34307672	PMID:34321999	PMID:34455539	PMID:36564670	PMID:36971977	PMID:37209824	PMID:37261953	PMID:37541099	PMID:38001535	PMID:38427737

Genomics

Comparative Map Data

Pick1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	79,113,373 - 79,133,666 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	79,113,373 - 79,133,684 (+)	Ensembl		GRCm39 Ensembl
GRCm38	15	79,229,140 - 79,249,466 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	79,229,173 - 79,249,484 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	79,059,604 - 79,079,896 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	15	79,057,068 - 79,076,715 (+)	NCBI		MGSCv36	mm8
Celera	15	81,348,804 - 81,369,231 (+)	NCBI		Celera
Cytogenetic Map	15	E1	NCBI
cM Map	15	37.7	NCBI

PICK1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	22	38,057,255 - 38,075,701 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	22	38,056,311 - 38,075,701 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	22	38,453,262 - 38,471,708 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	22	36,783,208 - 36,801,654 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	22	36,777,902 - 36,796,207	NCBI
Celera	22	22,255,002 - 22,273,457 (+)	NCBI		Celera
Cytogenetic Map	22	q13.1	NCBI
HuRef	22	21,417,897 - 21,436,386 (+)	NCBI		HuRef
CHM1_1	22	38,411,992 - 38,430,442 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	22	38,518,878 - 38,537,327 (+)	NCBI		T2T-CHM13v2.0

Pick1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	112,676,890 - 112,697,275 (+)	NCBI		GRCr8
mRatBN7.2	7	110,796,623 - 110,816,850 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	110,797,117 - 110,816,848 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	112,545,653 - 112,564,970 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	114,769,189 - 114,788,506 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	114,738,549 - 114,757,866 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	120,465,472 - 120,484,824 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	120,465,130 - 120,484,840 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	120,459,118 - 120,478,470 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	117,213,299 - 117,232,651 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	117,247,528 - 117,266,879 (+)	NCBI
Celera	7	107,131,151 - 107,150,407 (+)	NCBI		Celera
Cytogenetic Map	7	q34	NCBI

Pick1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955413	24,383,130 - 24,399,196 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955413	24,383,130 - 24,399,092 (+)	NCBI	ChiLan1.0	ChiLan1.0

POLR2F
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	23	47,812,190 - 47,900,125 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	22	50,500,550 - 50,602,004 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	22	18,868,872 - 18,988,918 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	22	36,796,053 - 36,814,464 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	22	36,796,015 - 36,814,469 (+)	Ensembl	panpan1.1		panPan2

PICK1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	26,595,301 - 26,614,170 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	26,595,768 - 26,613,756 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	26,550,611 - 26,569,400 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	27,387,103 - 27,406,123 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	27,387,124 - 27,406,155 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	27,107,123 - 27,126,143 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	27,418,687 - 27,437,706 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	27,595,780 - 27,614,797 (-)	NCBI		UU_Cfam_GSD_1.0

Pick1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	10,087,798 - 10,105,588 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936492	3,097,629 - 3,116,526 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936492	3,098,196 - 3,115,921 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PICK1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	9,808,451 - 9,825,539 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	9,808,444 - 9,829,677 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	7,208,317 - 7,225,652 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PICK1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	19	20,758,199 - 20,778,210 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	19	20,759,960 - 20,779,514 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666045	104,992,571 - 105,011,487 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pick1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624752	9,880,670 - 9,895,230 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624752	9,880,773 - 9,895,270 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Pick1
531 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	2062
Count of miRNA genes:	620
Interacting mature miRNAs:	765
Transcripts:	ENSMUST00000018295, ENSMUST00000053926, ENSMUST00000113954, ENSMUST00000163571, ENSMUST00000165609, ENSMUST00000166155, ENSMUST00000166417, ENSMUST00000168513, ENSMUST00000169548, ENSMUST00000171365, ENSMUST00000171581, ENSMUST00000172162
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
27226734	Tibmd5_m	tibia midshaft diameter 5, 10 week (mouse)					15	6129481	86684201	Mouse
26884442	Sklq6_m	skull length QTL 6, 5 week (mouse)					15	6129481	100797881	Mouse
27226777	Tibl8_m	tibia length 8, 5 week (mouse)					15	6929481	84584201	Mouse
1301433	Rapop5_m	radiation-induced apoptosis 5 (mouse)			Not determined		15	9273022	79474762	Mouse
1357526	Hyplip2_m	hyperlipidemia 2 (mouse)			Not determined		15	12402203	102896555	Mouse
26884425	Cvht2_m	cranial vault height 2, 5 week (mouse)					15	28800146	102008435	Mouse
1558985	Eae32_m	experimental allergic encephalomyelitis susceptibility 32 (mouse)			Not determined		15	32578416	103425899	Mouse
27226729	Tibmd2_m	tibia midshaft diameter 2, 5 week (mouse)					15	38000244	86684201	Mouse
26884402	Cvht9_m	cranial vault height 9, 16 week (mouse)					15	42163396	95497881	Mouse
1357756	Alaa4_m	alopecia areata 4 (mouse)			Not determined		15	46389646	80389845	Mouse
10755515	Amzn3_m	anatomical modifier of Zfp423 3 (mouse)					15	46389646	80389845	Mouse
1301006	Hfib1_m	hepatic fibrogenesis 1 (mouse)			Not determined		15	47306334	81306479	Mouse
1301860	Gct3_m	granulosa cell tumorigenesis 3 (mouse)			Not determined		15	47409596	81409691	Mouse
26884397	Humsd5_m	humerus midshaft diameter 5, 10 week (mouse)					15	48363396	98397881	Mouse
26884399	Humsd1_m	humerus midshaft diameter 1, 5 week (mouse)					15	48363396	101708435	Mouse
1301429	Pcir3_m	periosteal circumference 3 (mouse)			Not determined		15	48465362	82465496	Mouse
4142198	Hbtq_m	habituation QTL (mouse)			Not determined		15	51160708	85160833	Mouse
10045637	Heal27_m	wound healing/regeneration 29 (mouse)			Not determined		15	51418361	85418511	Mouse
10412067	Pain2_m	pain 2 (mouse)			Not determined		15	51645339	85645626	Mouse
1302080	Szs13_m	seizure susceptibility 13 (mouse)			Not determined		15	51685832	85694449	Mouse
1301708	Cocrb14_m	cocaine related behavior 14 (mouse)			Not determined		15	51806515	85806651	Mouse
38501067	Tip3_m	tuberculosis immunophenotype 3, IFN-g level (mouse)					15	53563396	89584203	Mouse
13504731	Cath5_m	carotid atherosclerosis 5 (mouse)					15	54789129	88789129	Mouse
1302074	Bmd4_m	bone mineral density 4 (mouse)			Not determined		15	56186708	103425899	Mouse
27095936	Ulnl4_m	ulna length 4, 5 week (mouse)					15	56763396	87684201	Mouse
1300800	Ses3_m	salmonella enteritidis susceptibility 3 (mouse)			Not determined		15	57117005	91117153	Mouse
1357407	Pfat4_m	predicted fat percentage 4 (mouse)	8.6		Body fat amount	predicted fat percentage	15	57117005	91117153	Mouse
12880420	V25Dq8_m	vitamin D inactive form serum level QTL 8 (mouse)					15	61584200	95584200	Mouse
1301601	Faq9_m	fluctuating asymmetry QTL 9 (mouse)			Not determined		15	63163903	97163995	Mouse
1558786	Msq1_m	MAV-1 susceptibility QTL 1 (mouse)			Not determined		15	63389646	81086436	Mouse
1302197	Bhr2_m	bronchial hyperresponsiveness 2 (mouse)			Not determined		15	64306334	103425899	Mouse
4141135	Cia35_m	collagen induced arthritis 35 (mouse)			Not determined		15	64811826	98811946	Mouse
1301119	Drb7_m	dopamine receptor binding 7 (mouse)			Not determined		15	65336578	99341028	Mouse
1301171	Brm2_m	brachyury modifier 2 (mouse)			Not determined		15	65525376	99525499	Mouse
4141921	Pstc3_m	periosteal circumference 3 (mouse)			Not determined		15	67270698	101270847	Mouse
1300627	Sluc26_m	susceptibility to lung cancer 26 (mouse)			Not determined		15	70345653	104073951	Mouse
1300648	Dbsty4_m	diabesity 4 (mouse)			Not determined		15	70349271	104073951	Mouse
1300726	Pitm4_m	prion incubation time 4 (mouse)			Not determined		15	70349271	104073951	Mouse
1302002	Cocia2_m	cocaine induced activation 2 (mouse)			Not determined		15	72372459	79899178	Mouse
14747011	Mancz13_m	mandible centroid size 13 (mouse)					15	72382669	104073951	Mouse
12791003	Aath8_m	aortic arch atherosclerosis 8 (mouse)					15	73430144	104073951	Mouse
15092079	Igly6_m	IgG glycosylation 6, GP6 (mouse)					15	74100540	82674156	Mouse
13442492	Mecth2_m	mechanosensation threshold 2 (mouse)					15	74662849	79387201	Mouse
1301472	Pain1_m	pain 1 (mouse)			Not determined		15	75320846	90813185	Mouse
1300851	Heal4_m	wound healing/regeneration 4 (mouse)			Not determined		15	77527592	104073951	Mouse
15092080	Igly7_m	IgG glycosylation 7, GP10 (mouse)					15	77794919	82674156	Mouse
4142060	W3q6_m	weight 3 weeks QTL 6 (mouse)			Not determined			78601103	102901704	Mouse
1357894	Epfpq3_m	epididymal fat percentage QTL 3 (mouse)			Not determined		15	78601103	102901704	Mouse
14928306	Manh79_m	mandible shape 79 (mouse)					15	78847557	104073951	Mouse
12880411	V125Dq11_m	vitamin D active form serum level QTL 11 (mouse)					15	78897881	104073951	Mouse

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001045558	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_008837	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AI385692	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AI893973	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK050224	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK090155	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK162724	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK177140	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL591921	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC023088	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC030363	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC030880	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC030912	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC040824	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC048788	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BE652516	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BU057774	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BU698586	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CA468666	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CD363874	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466550	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CK791908	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	Z46720	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSMUST00000018295 ⟹ ENSMUSP00000018295

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	15	79,113,582 - 79,133,666 (+)	Ensembl
GRCm38.p6 Ensembl	15	79,229,382 - 79,249,466 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000113954

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	15	79,129,474 - 79,131,934 (+)	Ensembl
GRCm38.p6 Ensembl	15	79,245,274 - 79,247,734 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000163571 ⟹ ENSMUSP00000128126

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	15	79,113,373 - 79,133,684 (+)	Ensembl
GRCm38.p6 Ensembl	15	79,229,173 - 79,249,484 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000165609

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	15	79,113,611 - 79,132,163 (+)	Ensembl
GRCm38.p6 Ensembl	15	79,229,411 - 79,247,963 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000166155 ⟹ ENSMUSP00000129468

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	15	79,113,902 - 79,133,529 (+)	Ensembl
GRCm38.p6 Ensembl	15	79,229,702 - 79,249,329 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000166417

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	15	79,113,658 - 79,118,546 (+)	Ensembl
GRCm38.p6 Ensembl	15	79,229,458 - 79,234,346 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000168513

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	15	79,127,168 - 79,131,832 (+)	Ensembl
GRCm38.p6 Ensembl	15	79,242,968 - 79,247,632 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000169548

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	15	79,113,616 - 79,132,163 (+)	Ensembl
GRCm38.p6 Ensembl	15	79,229,416 - 79,247,963 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000171365

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	15	79,113,705 - 79,125,584 (+)	Ensembl
GRCm38.p6 Ensembl	15	79,229,505 - 79,241,384 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000171581

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	15	79,130,535 - 79,133,666 (+)	Ensembl
GRCm38.p6 Ensembl	15	79,246,335 - 79,249,466 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000172162

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	15	79,129,077 - 79,131,800 (+)	Ensembl
GRCm38.p6 Ensembl	15	79,244,877 - 79,247,600 (+)	Ensembl

RefSeq Acc Id:

NM_001045558 ⟹ NP_001039023

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	15	79,113,582 - 79,133,666 (+)	NCBI
GRCm38	15	79,229,382 - 79,249,466 (+)	NCBI
MGSCv37	15	79,059,604 - 79,079,896 (+)	RGD
Celera	15	81,348,803 - 81,369,231 (+)	NCBI
cM Map	15		ENTREZGENE

Sequence:

show sequence

TGACGCGACAGTCGCGGTCGCCGCCAGGTGGAACGGCAGGTGGGTTCAGGTGCCAGCCTGGCCC
GGGCCTGGCAGTGGGACCGACTCTCTCGGTGAGCGACTGAAGCGGCTCCCAAGGCTCTGGAGAC
CGTGGGGCGGGCTCCAGAATCCGAGCCCGTCGCCCTGGCCTGGGGTCCTCCCCTGTACCAAACC
CAGTTTCCTATTCCCCTCCCGAGCTGGGCAGTTAGCCAGTCGGCCCCAACTCTCGGAACCATGT
TTGCAGACTTAGACTATGACATCGAAGAGGATAAATTAGGAATCCCCACTGTGCCTGGGAAGGT
CACCCTACAGAAGGATGCCCAGAACCTGATTGGGATCAGCATCGGAGGAGGGGCCCAATACTGT
CCTTGTCTCTATATCGTCCAGGTATTTGATAACACGCCTGCAGCCTTGGATGGCACTGTGGCAG
CTGGTGACGAGATCACTGGGGTCAATGGCAAGTCAATCAAAGGAAAAACCAAGGTAGAGGTGGC
GAAGATGATTCAGGAAGTGAAGGGGGAGGTGACCATCCATTACAACAAGCTGCAGGCGGACCCT
AAGCAGGGCATGTCCCTGGACATTGTGTTGAAGAAAGTCAAGCACCGGCTGGTAGAAAACATGA
GTTCAGGCACAGCTGATGCCCTGGGCCTAAGCCGCGCCATCCTGTGTAACGATGGCTTGGTAAA
GCGGCTGGAGGAGCTGGAACGCACTGCTGAGCTGTACAAAGGGATGACGGAACACACCAAGAAT
CTCCTACGGGCCTTTTATGAGCTGTCGCAGACCCACCGGGCCTTTGGGGACGTGTTCTCTGTGA
TTGGGGTGCGGGAGCCGCAGCCAGCAGCAAGTGAAGCATTTGTGAAGTTTGCAGACGCACACCG
CAGCATTGAGAAGTTCGGCATTCGGCTACTGAAAACCATCAAACCGATGCTGACGGACCTGAAC
ACGTACCTCAATAAAGCCATCCCTGATACACGCCTCACCATCAAGAAGTACCTGGATGTGAAGT
TTGAGTACCTGTCGTACTGTCTAAAGGTGAAGGAGATGGATGACGAGGAATACAGCTGCATTGC
CCTAGGCGAGCCGCTATACCGAGTGAGCACAGGCAACTATGAGTACCGCCTCATTCTGCGCTGC
CGCCAGGAGGCTCGAGCCCGCTTCTCCCAGATGCGCAAAGATGTTCTGGAGAAGATGGAGCTGC
TGGACCAGAAGCACGTCCAGGACATCGTGTTCCAGCTGCAGCGCTTCGTATCCACCATGTCCAA
GTACTATAATGACTGCTATGCAGTGCTGCAGGACGCCGACGTCTTCCCCATTGAGGTGGACCTG
GCACACACCACTCTAGCCTATGGCCCTAACCAAGGCAGCTTCACTGATGGAGAGGAGGAGGATG
AAGAGGAGGAGGATGGGGCAGCTAGGGAAGTGTCCAAGGACGCATGTGGGGCCACTGGGCCTAC
GGACAAGGGCGGAAGCTGGTGTGACTCCTGAGTGCCCCCTCAAGTGGACCTGGGGGGCAGGGTA
GTGGGAGGACCGCAGTGGGAGTGGGGCGGGACCACTGTAGGACAGCGAAGGCATATAGTGGCGC
ATAAAAGCCTGCTGGCTCGGGGCGCCTGCCTCCCTGCTCCTCTGTCCTCAAACAGTGAACCCAG
GCTGCAGCCTGAGACCTGGACTCTAGCCCCCATCCATCCTTCCCATCTCCCAGCTAGAGGGAGA
GCTGGGCTTTGGACAGAAAAGAGAAGGGGCTGGAGCAGACAGAGCACAGGACCTGTCCCTGTGA
GCGCCTCGGTGGTGCCAAGCCTGCAGGGAGTGGGAGCCGGGTGGACATCTGAGGCTGGGGCCAG
TGTACCAGGGCAGCCCCTGAGTCCACATGCACACCTCAGCAGCCTATATTTATTTGTTTCTGGT
TTAGCCTCAAGGGCTGGAAGCTGGGCCTGTATTGAATAAACAGAAACCCAGACAGAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_008837 ⟹ NP_032863

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	15	79,113,373 - 79,133,666 (+)	NCBI
GRCm38	15	79,229,173 - 79,249,466 (+)	NCBI
MGSCv37	15	79,059,604 - 79,079,896 (+)	RGD
Celera	15	81,348,803 - 81,369,231 (+)	NCBI
cM Map	15		ENTREZGENE

Sequence:

show sequence

GGCGGAACGGCCAAGGGCGGGGTCCGGGGCCGCCGACATGTCTAGACCTTTTCTTCCCTTCCCT
TTTTTTCACACTAACGGCGAACTTCCACCAACACTTGTTCTTTTTCCTGGTTCAGAGAGTCCCG
GAGCGGAGACAGAAGGGTTGCCTGCAGGGATTGGGGCAAAGACTCGAGGGGAGAGGCGGGACTT
CCGCGTCCGACCGGAAGTGACGCGACAGTCGCGGTCGCCGCCAGGTGGAACGGCAGACCCAGTT
TCCTATTCCCCTCCCGAGCTGGGCAGTTAGCCAGTCGGCCCCAACTCTCGGAACCATGTTTGCA
GACTTAGACTATGACATCGAAGAGGATAAATTAGGAATCCCCACTGTGCCTGGGAAGGTCACCC
TACAGAAGGATGCCCAGAACCTGATTGGGATCAGCATCGGAGGAGGGGCCCAATACTGTCCTTG
TCTCTATATCGTCCAGGTATTTGATAACACGCCTGCAGCCTTGGATGGCACTGTGGCAGCTGGT
GACGAGATCACTGGGGTCAATGGCAAGTCAATCAAAGGAAAAACCAAGGTAGAGGTGGCGAAGA
TGATTCAGGAAGTGAAGGGGGAGGTGACCATCCATTACAACAAGCTGCAGGCGGACCCTAAGCA
GGGCATGTCCCTGGACATTGTGTTGAAGAAAGTCAAGCACCGGCTGGTAGAAAACATGAGTTCA
GGCACAGCTGATGCCCTGGGCCTAAGCCGCGCCATCCTGTGTAACGATGGCTTGGTAAAGCGGC
TGGAGGAGCTGGAACGCACTGCTGAGCTGTACAAAGGGATGACGGAACACACCAAGAATCTCCT
ACGGGCCTTTTATGAGCTGTCGCAGACCCACCGGGCCTTTGGGGACGTGTTCTCTGTGATTGGG
GTGCGGGAGCCGCAGCCAGCAGCAAGTGAAGCATTTGTGAAGTTTGCAGACGCACACCGCAGCA
TTGAGAAGTTCGGCATTCGGCTACTGAAAACCATCAAACCGATGCTGACGGACCTGAACACGTA
CCTCAATAAAGCCATCCCTGATACACGCCTCACCATCAAGAAGTACCTGGATGTGAAGTTTGAG
TACCTGTCGTACTGTCTAAAGGTGAAGGAGATGGATGACGAGGAATACAGCTGCATTGCCCTAG
GCGAGCCGCTATACCGAGTGAGCACAGGCAACTATGAGTACCGCCTCATTCTGCGCTGCCGCCA
GGAGGCTCGAGCCCGCTTCTCCCAGATGCGCAAAGATGTTCTGGAGAAGATGGAGCTGCTGGAC
CAGAAGCACGTCCAGGACATCGTGTTCCAGCTGCAGCGCTTCGTATCCACCATGTCCAAGTACT
ATAATGACTGCTATGCAGTGCTGCAGGACGCCGACGTCTTCCCCATTGAGGTGGACCTGGCACA
CACCACTCTAGCCTATGGCCCTAACCAAGGCAGCTTCACTGATGGAGAGGAGGAGGATGAAGAG
GAGGAGGATGGGGCAGCTAGGGAAGTGTCCAAGGACGCATGTGGGGCCACTGGGCCTACGGACA
AGGGCGGAAGCTGGTGTGACTCCTGAGTGCCCCCTCAAGTGGACCTGGGGGGCAGGGTAGTGGG
AGGACCGCAGTGGGAGTGGGGCGGGACCACTGTAGGACAGCGAAGGCATATAGTGGCGCATAAA
AGCCTGCTGGCTCGGGGCGCCTGCCTCCCTGCTCCTCTGTCCTCAAACAGTGAACCCAGGCTGC
AGCCTGAGACCTGGACTCTAGCCCCCATCCATCCTTCCCATCTCCCAGCTAGAGGGAGAGCTGG
GCTTTGGACAGAAAAGAGAAGGGGCTGGAGCAGACAGAGCACAGGACCTGTCCCTGTGAGCGCC
TCGGTGGTGCCAAGCCTGCAGGGAGTGGGAGCCGGGTGGACATCTGAGGCTGGGGCCAGTGTAC
CAGGGCAGCCCCTGAGTCCACATGCACACCTCAGCAGCCTATATTTATTTGTTTCTGGTTTAGC
CTCAAGGGCTGGAAGCTGGGCCTGTATTGAATAAACAGAAACCCAGACAGAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001039023	(Get FASTA)	NCBI Sequence Viewer
	NP_032863	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH48788	(Get FASTA)	NCBI Sequence Viewer
	BAC41117	(Get FASTA)	NCBI Sequence Viewer
	CAA86675	(Get FASTA)	NCBI Sequence Viewer
	EDL04663	(Get FASTA)	NCBI Sequence Viewer
	EDL04664	(Get FASTA)	NCBI Sequence Viewer
	EDL04665	(Get FASTA)	NCBI Sequence Viewer
	EDL04666	(Get FASTA)	NCBI Sequence Viewer
	EDL04667	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000018295
	ENSMUSP00000018295.8
	ENSMUSP00000128126
	ENSMUSP00000128126.2
	ENSMUSP00000129468.2
GenBank Protein	Q62083	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_032863 ⟸ NM_008837

- UniProtKB:

E9PUZ5 (UniProtKB/TrEMBL), Q80VC8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MFADLDYDIEEDKLGIPTVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTV
AAGDEITGVNGKSIKGKTKVEVAKMIQEVKGEVTIHYNKLQADPKQGMSLDIVLKKVKHRLVEN
MSSGTADALGLSRAILCNDGLVKRLEELERTAELYKGMTEHTKNLLRAFYELSQTHRAFGDVFS
VIGVREPQPAASEAFVKFADAHRSIEKFGIRLLKTIKPMLTDLNTYLNKAIPDTRLTIKKYLDV
KFEYLSYCLKVKEMDDEEYSCIALGEPLYRVSTGNYEYRLILRCRQEARARFSQMRKDVLEKME
LLDQKHVQDIVFQLQRFVSTMSKYYNDCYAVLQDADVFPIEVDLAHTTLAYGPNQGSFTDGEEE
DEEEEDGAAREVSKDACGATGPTDKGGSWCDS

hide sequence

RefSeq Acc Id:

NP_001039023 ⟸ NM_001045558

- UniProtKB:

E9PUZ5 (UniProtKB/TrEMBL), Q80VC8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MFADLDYDIEEDKLGIPTVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTV
AAGDEITGVNGKSIKGKTKVEVAKMIQEVKGEVTIHYNKLQADPKQGMSLDIVLKKVKHRLVEN
MSSGTADALGLSRAILCNDGLVKRLEELERTAELYKGMTEHTKNLLRAFYELSQTHRAFGDVFS
VIGVREPQPAASEAFVKFADAHRSIEKFGIRLLKTIKPMLTDLNTYLNKAIPDTRLTIKKYLDV
KFEYLSYCLKVKEMDDEEYSCIALGEPLYRVSTGNYEYRLILRCRQEARARFSQMRKDVLEKME
LLDQKHVQDIVFQLQRFVSTMSKYYNDCYAVLQDADVFPIEVDLAHTTLAYGPNQGSFTDGEEE
DEEEEDGAAREVSKDACGATGPTDKGGSWCDS

hide sequence

RefSeq Acc Id:

ENSMUSP00000128126 ⟸ ENSMUST00000163571

RefSeq Acc Id:

ENSMUSP00000129468 ⟸ ENSMUST00000166155

RefSeq Acc Id:

ENSMUSP00000018295 ⟸ ENSMUST00000018295

Protein Domains

AH Galectin PDZ

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q62083-F1-model_v2	AlphaFold	Q62083	1-416	view protein structure

Promoters

RGD ID:

6826327

Promoter ID:

MM_KWN:19052

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day2, 3T3L1_Day3, BoneMarrow_4Hour, Kidney, MEF_B6

Transcripts:

ENSMUST00000053926, NM_001045558, NM_008837

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	15	79,059,471 - 79,059,971 (+)	MPROMDB

RGD ID:

8684328

Promoter ID:

EPDNEW_M20195

Type:

multiple initiation site

Name:

Pick1_2

Description:

Mus musculus protein interacting with C kinase 1 , transcriptvariant 2, mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M20196

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	15	79,229,159 - 79,229,219	EPDNEW

RGD ID:

8684330

Promoter ID:

EPDNEW_M20196

Type:

initiation region

Name:

Pick1_1

Description:

Mus musculus protein interacting with C kinase 1 , transcriptvariant 2, mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M20195

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	15	79,229,391 - 79,229,451	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:894645	AgrOrtholog
Ensembl Genes	ENSMUSG00000068206	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000018295	ENTREZGENE
	ENSMUST00000018295.14	UniProtKB/TrEMBL
	ENSMUST00000163571	ENTREZGENE
	ENSMUST00000163571.8	UniProtKB/TrEMBL
	ENSMUST00000166155.2	UniProtKB/TrEMBL
Gene3D-CATH	1.20.1270.60	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	2.30.42.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	2.60.120.200	UniProtKB/TrEMBL
InterPro	AH/BAR_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	AH_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Arfaptin_fam	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ConA-like_subgrp	UniProtKB/TrEMBL
	Galectin_CRD	UniProtKB/TrEMBL
	PDZ	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PDZ_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PICK1_BAR	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:18693	UniProtKB/TrEMBL
MGD	MGI:894645	ENTREZGENE
NCBI Gene	18693	ENTREZGENE
PANTHER	PRKCA-BINDING PROTEIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR12141	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Arfaptin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Gal-bind_lectin	UniProtKB/TrEMBL
	PDZ	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Pick1	PhenoGen
PROSITE	GALECTIN	UniProtKB/TrEMBL
	PDZ	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PS50870	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	Arfaptin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Gal-bind_lectin	UniProtKB/TrEMBL
	PDZ	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	ConA_like_lec_gl	UniProtKB/TrEMBL
	SSF103657	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF50156	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	E9PUZ5	ENTREZGENE, UniProtKB/TrEMBL
	PICK1_MOUSE	UniProtKB/Swiss-Prot, ENTREZGENE
	Q80VC8	ENTREZGENE, UniProtKB/TrEMBL
	Q8C1W2_MOUSE	UniProtKB/TrEMBL
UniProt Secondary	E9PY04	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

RGD Manual Annotations

Mammalian Phenotype

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

RGD Manual Annotations

Mammalian Phenotype