Acsl4 (acyl-CoA synthetase long-chain family member 4) - Rat Genome Database

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Gene: Acsl4 (acyl-CoA synthetase long-chain family member 4) Mus musculus
Analyze
Symbol: Acsl4
Name: acyl-CoA synthetase long-chain family member 4
RGD ID: 69444
MGI Page MGI
Description: Enables long-chain fatty acid-CoA ligase activity. Acts upstream of or within embryonic process involved in female pregnancy. Located in mitochondrion. Is expressed in several structures, including alimentary system; integumental system; limb mesenchyme; nervous system; and sensory organ. Human ortholog(s) of this gene implicated in intellectual disability and non-syndromic X-linked intellectual disability 63. Orthologous to human ACSL4 (acyl-CoA synthetase long chain family member 4).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 9430020A05Rik; AC; ACS4; arachidonate--CoA ligase; AU018108; Fac; Facl4; fatty acid-Coenzyme A ligase, long chain 4; La; LACS 4; Lacs4; long-chain acyl-CoA synthetase 4; long-chain-fatty-acid--CoA ligase 4; mACS4
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X141,100,989 - 141,173,792 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX141,100,989 - 141,173,531 (-)EnsemblGRCm39 Ensembl
GRCm38X142,317,993 - 142,390,802 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX142,317,993 - 142,390,535 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X138,752,536 - 138,825,078 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X137,564,361 - 137,636,903 (-)NCBIMGSCv36mm8
CeleraX126,313,470 - 126,386,150 (-)NCBICelera
Cytogenetic MapXF2NCBI
cM MapX63.12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-dexrazoxane  (EXP)
1,2-dimethylhydrazine  (EXP)
1,3-dichloropropan-2-ol  (EXP,ISO)
1-chloro-2,4-dinitrobenzene  (ISO)
1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
17beta-estradiol 3-benzoate  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,4,6-tribromophenol  (ISO)
2,4-dinitrotoluene  (ISO)
2-butoxyethanol  (EXP)
2-hydroxypropanoic acid  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3-chloropropane-1,2-diol  (ISO)
3-hydroxybutyric acid  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (EXP)
3-methylcholanthrene  (ISO)
3H-1,2-dithiole-3-thione  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-hydroxyphenyl retinamide  (EXP)
4-phenylbutyric acid  (ISO)
6-propyl-2-thiouracil  (ISO)
acrolein  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (ISO)
amphetamine  (ISO)
Angoline  (EXP)
apigenin  (EXP)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
aurantio-obtusin  (ISO)
beauvericin  (ISO)
benzalkonium chloride  (EXP)
benzo[a]pyrene  (EXP,ISO)
benzo[e]pyrene  (ISO)
beryllium sulfate  (ISO)
bezafibrate  (EXP)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
buspirone  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
cadmium sulfate  (ISO)
caffeine  (ISO)
calciol  (EXP)
cantharidin  (EXP)
carbon nanotube  (EXP)
chloroquine  (ISO)
choline  (EXP)
chromium(6+)  (EXP)
cisplatin  (ISO)
clofibrate  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
CU-O LINKAGE  (ISO)
Cuprizon  (ISO)
cyclophosphamide  (EXP)
deoxynivalenol  (ISO)
desferrioxamine B  (ISO)
dexamethasone  (EXP,ISO)
dibutyl phthalate  (EXP,ISO)
dichloroacetic acid  (EXP)
dimethyl fumarate  (ISO)
diuron  (ISO)
dorsomorphin  (ISO)
doxorubicin  (EXP,ISO)
elemental selenium  (ISO)
enniatin  (ISO)
enzyme inhibitor  (ISO)
epoxiconazole  (EXP)
ethambutol  (ISO)
ethanol  (EXP,ISO)
ethyl methanesulfonate  (ISO)
farnesol  (ISO)
fenofibrate  (EXP)
ferrostatin-1  (EXP,ISO)
fluoranthene  (EXP)
fluoxetine  (ISO)
folic acid  (EXP)
formaldehyde  (ISO)
Gastrodin  (EXP)
glutathione  (ISO)
glycidol  (ISO)
GW 4064  (ISO)
GW 7647  (ISO)
hexadecanoic acid  (ISO)
hydrogen sulfide  (ISO)
indoline  (ISO)
indometacin  (ISO)
isoniazide  (ISO)
ivermectin  (ISO)
ketoconazole  (ISO)
L-ascorbic acid  (ISO)
L-glutamic acid  (EXP)
L-methionine  (EXP)
lead(II) chloride  (ISO)
maneb  (EXP)
melatonin  (ISO)
methapyrilene  (ISO)
methotrexate  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
mono(2-ethylhexyl) phthalate  (EXP)
Monobutylphthalate  (EXP)
N-methyl-4-phenylpyridinium  (EXP,ISO)
N-nitrosodiethylamine  (EXP)
nefazodone  (ISO)
nickel atom  (ISO)
nimesulide  (ISO)
O-methyleugenol  (ISO)
obeticholic acid  (ISO)
oleic acid  (ISO)
ozone  (EXP)
paracetamol  (EXP,ISO)
paraquat  (EXP,ISO)
perfluorohexanesulfonic acid  (EXP)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
perfluorooctanoic acid  (EXP,ISO)
phenobarbital  (EXP)
pirinixic acid  (EXP,ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
pyrazinecarboxamide  (ISO)
rac-lactic acid  (ISO)
resveratrol  (EXP,ISO)
rifampicin  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
senecionine  (EXP)
sevoflurane  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (EXP)
sodium arsenite  (ISO)
sodium fluoride  (EXP)
succimer  (EXP)
testosterone  (EXP,ISO)
tetrachloromethane  (EXP,ISO)
tetradecane  (ISO)
thiazoles  (ISO)
thimerosal  (ISO)
titanium dioxide  (EXP)
topiramate  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
trimellitic anhydride  (EXP)
triptonide  (EXP)
troglitazone  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vancomycin  (EXP)
verteporfin  (ISO)
vinclozolin  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Up-regulation of fatty acid metabolizing-enzymes mRNA in rat spinal cord during persistent peripheral local inflammation. Benani A, etal., Eur J Neurosci. 2003 Oct;18(7):1904-14.
2. Abnormal uterus with polycysts, accumulation of uterine prostaglandins, and reduced fertility in mice heterozygous for acyl-CoA synthetase 4 deficiency. Cho YY, etal., Biochem Biophys Res Commun 2001 Jun 22;284(4):993-7.
3. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
4. Roles of PLC-beta2 and -beta3 and PI3Kgamma in chemoattractant-mediated signal transduction. Li Z, etal., Science 2000 Feb 11;287(5455):1046-9.
5. FACL4, encoding fatty acid-CoA ligase 4, is mutated in nonspecific X-linked mental retardation. Meloni I, etal., Nat Genet 2002 Apr;30(4):436-40.
6. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
7. MGDs mouse GO annotations MGD data from the GO Consortium
8. MGD IEA MGD IEA
9. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
10. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
11. Mouse MP Annotation Import Pipeline RGD automated import pipeline
12. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
13. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
14. Evidence for 26 distinct acyl-coenzyme A synthetase genes in the human genome. Watkins PA, etal., J Lipid Res. 2007 Dec;48(12):2736-50. Epub 2007 Aug 30.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10675551   PMID:10828604   PMID:10922068   PMID:10924347   PMID:11042159   PMID:11076861   PMID:11161448   PMID:11217851   PMID:12477932   PMID:12520002  
PMID:12904583   PMID:14610273   PMID:14681479   PMID:15782199   PMID:16141072   PMID:16141073   PMID:17197235   PMID:17967808   PMID:18614015   PMID:18799693   PMID:21267068   PMID:21677750  
PMID:21873635   PMID:21903867   PMID:22366036   PMID:22922362   PMID:23159612   PMID:23376217   PMID:24457600   PMID:24879802   PMID:25505152   PMID:25645621   PMID:26949059   PMID:29398618  
PMID:30457570   PMID:30550785   PMID:30721098   PMID:30737476   PMID:30962574   PMID:30973865   PMID:31376475   PMID:31504388   PMID:32094346   PMID:32422031   PMID:32736139   PMID:33070393  
PMID:33444733   PMID:33767380   PMID:34331963   PMID:34455055   PMID:34725110   PMID:35114894   PMID:35180475   PMID:35243801   PMID:35567995   PMID:35941365   PMID:35963845   PMID:36817367  
PMID:36921996   PMID:37023693   PMID:37133631   PMID:37169572   PMID:37586249   PMID:37611494   PMID:37670055   PMID:37705752   PMID:37884942   PMID:37983658   PMID:38040804   PMID:38073444  
PMID:38088220   PMID:38195497   PMID:38237228   PMID:38289595  


Genomics

Comparative Map Data
Acsl4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X141,100,989 - 141,173,792 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX141,100,989 - 141,173,531 (-)EnsemblGRCm39 Ensembl
GRCm38X142,317,993 - 142,390,802 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX142,317,993 - 142,390,535 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X138,752,536 - 138,825,078 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X137,564,361 - 137,636,903 (-)NCBIMGSCv36mm8
CeleraX126,313,470 - 126,386,150 (-)NCBICelera
Cytogenetic MapXF2NCBI
cM MapX63.12NCBI
ACSL4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X109,641,335 - 109,733,257 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX109,624,244 - 109,733,403 (-)EnsemblGRCh38hg38GRCh38
GRCh37X108,884,564 - 108,976,486 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X108,771,220 - 108,863,277 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X108,690,710 - 108,782,764NCBI
CeleraX109,364,202 - 109,456,256 (-)NCBICelera
Cytogenetic MapXq23NCBI
HuRefX98,507,227 - 98,598,360 (-)NCBIHuRef
CHM1_1X108,795,830 - 108,887,888 (-)NCBICHM1_1
T2T-CHM13v2.0X108,089,125 - 108,181,021 (-)NCBIT2T-CHM13v2.0
Acsl4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X110,739,633 - 110,803,416 (-)NCBIGRCr8
mRatBN7.2X105,942,794 - 106,006,573 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX105,942,799 - 106,006,427 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX108,080,606 - 108,144,232 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X111,579,781 - 111,643,413 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X109,146,084 - 109,209,885 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X113,596,247 - 113,660,024 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX113,596,239 - 113,659,944 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X112,046,187 - 112,109,974 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X36,168,547 - 36,232,162 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X36,222,015 - 36,285,631 (+)NCBI
CeleraX105,356,949 - 105,420,560 (-)NCBICelera
Cytogenetic MapXq33NCBI
Acsl4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554906,143,833 - 6,228,452 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554906,143,833 - 6,228,395 (+)NCBIChiLan1.0ChiLan1.0
ACSL4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X109,114,032 - 109,224,458 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X109,117,636 - 109,227,486 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X98,731,109 - 98,841,067 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X109,219,030 - 109,311,055 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX109,206,964 - 109,310,914 (-)Ensemblpanpan1.1panPan2
ACSL4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X82,864,506 - 82,943,984 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX82,866,823 - 82,916,789 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX68,942,879 - 69,022,158 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X84,514,941 - 84,594,878 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX84,514,969 - 84,594,499 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X81,992,030 - 82,071,595 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X83,686,230 - 83,765,682 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X83,514,931 - 83,594,528 (-)NCBIUU_Cfam_GSD_1.0
Acsl4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X82,117,850 - 82,200,866 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364995,456,986 - 5,540,144 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364995,456,985 - 5,540,115 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACSL4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX89,760,866 - 89,806,274 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X89,760,863 - 89,838,103 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X105,375,895 - 105,452,684 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ACSL4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X97,488,414 - 97,575,251 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606522,691,629 - 22,774,770 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Acsl4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248036,336,964 - 6,372,815 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248036,272,954 - 6,372,815 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Acsl4
733 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:5183
Count of miRNA genes:679
Interacting mature miRNAs:908
Transcripts:ENSMUST00000033634, ENSMUST00000112903, ENSMUST00000112904, ENSMUST00000112907, ENSMUST00000140520
Prediction methods:Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
13824980Ferq1_mgenetic fertility QTL 1 (mouse)X54045360148782996Mouse
13208552Wght12_mweight 12 (mouse)X94043606149782996Mouse
13208556Lgth14_mbody length 14 (mouse)X94043606149782996Mouse
1357823Spha3_msperm head anomaly 3 (mouse)Not determinedX102055848162758941Mouse
1301209Cia19_mcollagen induced arthritis 19 (mouse)Not determinedX120993165160213038Mouse
25314309Syncl5_msynaptonemal complex length 5 (mouse)X121909697152582996Mouse
10412164Cmv2_mcytomegalovirus resistance 2 (mouse)Not determinedX125685149159685269Mouse
13824981Svwq2_mseminal vesicle weight QTL 2 (mouse)X128900749153782996Mouse
1558900Bw3_mbody weight QTL 3 (mouse)Not determinedX133540040165298595Mouse
1301276Tswt_mtestis weight (mouse)Not determinedX138376411150789338Mouse

Markers in Region
AU018108  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X142,318,184 - 142,318,324UniSTSGRCm38
MGSCv37X138,752,727 - 138,752,867UniSTSGRCm37
CeleraX132,012,611 - 132,012,750UniSTS
CeleraX126,313,660 - 126,313,800UniSTS
Cytogenetic MapXF2UniSTS
Whitehead/MRC_RHX1657.99UniSTS
Acsl4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic MapXF2UniSTS
cM MapX UniSTS
UniSTS:235955  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X142,319,841 - 142,319,924UniSTSGRCm38
MGSCv37X138,754,384 - 138,754,467UniSTSGRCm37
CeleraX126,315,317 - 126,315,400UniSTS
Cytogenetic MapXF2UniSTS
Acsl4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic MapXF2UniSTS
cM MapX UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001033600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_019477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_207625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011247842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011247843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030251379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB033885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB033886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB033887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ243502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK034650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK054387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL731672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB857663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC016416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC058663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HB881675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HC939084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000033634   ⟹   ENSMUSP00000033634
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX141,100,989 - 141,173,531 (-)Ensembl
GRCm38.p6 EnsemblX142,317,993 - 142,390,535 (-)Ensembl
RefSeq Acc Id: ENSMUST00000112903   ⟹   ENSMUSP00000108524
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX141,100,989 - 141,173,500 (-)Ensembl
GRCm38.p6 EnsemblX142,317,993 - 142,390,504 (-)Ensembl
RefSeq Acc Id: ENSMUST00000112904   ⟹   ENSMUSP00000108525
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX141,100,989 - 141,173,500 (-)Ensembl
GRCm38.p6 EnsemblX142,317,993 - 142,390,504 (-)Ensembl
RefSeq Acc Id: ENSMUST00000112907   ⟹   ENSMUSP00000108528
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX141,100,989 - 141,173,340 (-)Ensembl
GRCm38.p6 EnsemblX142,317,993 - 142,390,344 (-)Ensembl
RefSeq Acc Id: ENSMUST00000140520
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX141,103,667 - 141,111,021 (-)Ensembl
GRCm38.p6 EnsemblX142,320,671 - 142,328,025 (-)Ensembl
RefSeq Acc Id: NM_001033600   ⟹   NP_001028772
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X141,100,989 - 141,173,531 (-)NCBI
GRCm38X142,317,993 - 142,390,535 (-)NCBI
MGSCv37X138,752,536 - 138,825,078 (-)RGD
CeleraX126,313,470 - 126,386,150 (-)RGD
cM MapX ENTREZGENE
Sequence:
RefSeq Acc Id: NM_019477   ⟹   NP_062350
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X141,100,989 - 141,173,531 (-)NCBI
GRCm38X142,317,993 - 142,390,535 (-)NCBI
MGSCv37X138,752,536 - 138,825,078 (-)RGD
CeleraX126,313,470 - 126,386,150 (-)RGD
cM MapX ENTREZGENE
Sequence:
RefSeq Acc Id: NM_207625   ⟹   NP_997508
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X141,100,989 - 141,173,531 (-)NCBI
GRCm38X142,317,993 - 142,390,535 (-)NCBI
MGSCv37X138,752,536 - 138,825,078 (-)RGD
CeleraX126,313,470 - 126,386,150 (-)RGD
cM MapX ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011247842   ⟹   XP_011246144
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X141,100,989 - 141,173,791 (-)NCBI
GRCm38X142,318,345 - 142,390,801 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011247843   ⟹   XP_011246145
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X141,100,989 - 141,173,791 (-)NCBI
GRCm38X142,318,345 - 142,390,801 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030251379   ⟹   XP_030107239
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X141,100,989 - 141,173,792 (-)NCBI
GRCm38X142,318,345 - 142,390,802 (-)NCBI
Sequence:
RefSeq Acc Id: NP_997508   ⟸   NM_207625
- Peptide Label: isoform 1
- UniProtKB: Q9JHT4 (UniProtKB/Swiss-Prot),   Q5D071 (UniProtKB/Swiss-Prot),   Q9R0H3 (UniProtKB/Swiss-Prot),   Q9QUJ7 (UniProtKB/Swiss-Prot),   Q8BW44 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_062350   ⟸   NM_019477
- Peptide Label: isoform 2
- UniProtKB: Q8BW44 (UniProtKB/TrEMBL),   Q91YN3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001028772   ⟸   NM_001033600
- Peptide Label: isoform 2
- UniProtKB: Q91YN3 (UniProtKB/TrEMBL),   Q8BW44 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011246145   ⟸   XM_011247843
- Peptide Label: isoform X2
- UniProtKB: Q91YN3 (UniProtKB/TrEMBL),   Q8BW44 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011246144   ⟸   XM_011247842
- Peptide Label: isoform X2
- UniProtKB: Q91YN3 (UniProtKB/TrEMBL),   Q8BW44 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030107239   ⟸   XM_030251379
- Peptide Label: isoform X1
- UniProtKB: Q9QUJ7 (UniProtKB/Swiss-Prot),   Q9JHT4 (UniProtKB/Swiss-Prot),   Q5D071 (UniProtKB/Swiss-Prot),   Q9R0H3 (UniProtKB/Swiss-Prot),   Q8BW44 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000108525   ⟸   ENSMUST00000112904
RefSeq Acc Id: ENSMUSP00000108528   ⟸   ENSMUST00000112907
RefSeq Acc Id: ENSMUSP00000108524   ⟸   ENSMUST00000112903
RefSeq Acc Id: ENSMUSP00000033634   ⟸   ENSMUST00000033634
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9QUJ7-F1-model_v2 AlphaFold Q9QUJ7 1-711 view protein structure

Promoters
RGD ID:6845421
Promoter ID:MM_KWN:62120
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000112907,   NM_001033600,   NM_019477,   NM_207625
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X138,824,866 - 138,825,992 (-)MPROMDB
RGD ID:13681544
Promoter ID:EPDNEW_M24921
Type:single initiation site
Name:Acsl4_2
Description:Mus musculus acyl-CoA synthetase long-chain family member 4 ,transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M24922  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38X142,318,877 - 142,318,937EPDNEW
RGD ID:13681546
Promoter ID:EPDNEW_M24922
Type:multiple initiation site
Name:Acsl4_1
Description:Mus musculus acyl-CoA synthetase long-chain family member 4 ,transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M24921  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38X142,390,504 - 142,390,564EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1354713 AgrOrtholog
Ensembl Genes ENSMUSG00000031278 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000033634 ENTREZGENE
  ENSMUST00000033634.5 UniProtKB/Swiss-Prot
  ENSMUST00000112903 ENTREZGENE
  ENSMUST00000112903.8 UniProtKB/Swiss-Prot
  ENSMUST00000112904 ENTREZGENE
  ENSMUST00000112904.8 UniProtKB/Swiss-Prot
  ENSMUST00000112907.8 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.300.30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.50.12780 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro AMP-bd_C_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  AMP-binding_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  AMP-dep_Synth/Lig UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  AMP-dep_Synthh-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:50790 UniProtKB/Swiss-Prot
MGD MGI:1354713 ENTREZGENE
NCBI Gene 50790 ENTREZGENE
PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LONG-CHAIN-FATTY-ACID--COA LIGASE 4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam AMP-binding UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Acsl4 PhenoGen
PROSITE AMP_BINDING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Acetyl-CoA synthetase-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt ACSL4_MOUSE UniProtKB/Swiss-Prot
  Q5D071 ENTREZGENE
  Q8BW44 ENTREZGENE, UniProtKB/TrEMBL
  Q91YN3 ENTREZGENE, UniProtKB/TrEMBL
  Q9JHT4 ENTREZGENE
  Q9QUJ7 ENTREZGENE
  Q9R0H3 ENTREZGENE
UniProt Secondary Q5D071 UniProtKB/Swiss-Prot
  Q9JHT4 UniProtKB/Swiss-Prot
  Q9R0H3 UniProtKB/Swiss-Prot