Tagln3 (transgelin 3) - Rat Genome Database

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Gene: Tagln3 (transgelin 3) Rattus norvegicus
Analyze
Symbol: Tagln3
Name: transgelin 3
RGD ID: 69301
Description: Predicted to act upstream of or within negative regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be active in cytoskeleton. Orthologous to human TAGLN3 (transgelin 3); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3H-1,2-dithiole-3-thione; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC103693564; neuronal protein 22; neuronal protein Np25; Np22; Np25; transgelin-3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21155,099,887 - 55,113,457 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1155,099,743 - 55,113,485 (+)Ensembl
Rnor_6.01160,072,983 - 60,086,552 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1160,072,727 - 60,086,553 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl1157,505,005 - 57,518,933 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01160,668,085 - 60,681,692 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41156,587,304 - 56,600,874 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11156,645,293 - 56,658,463 (+)NCBI
Celera1154,624,418 - 54,637,992 (+)NCBICelera
Cytogenetic Map11q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoskeleton  (IBA)
nucleus  (ISO)

References

Additional References at PubMed
PMID:16542643   PMID:17634366   PMID:18480465   PMID:31904090  


Genomics

Comparative Map Data
Tagln3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21155,099,887 - 55,113,457 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1155,099,743 - 55,113,485 (+)Ensembl
Rnor_6.01160,072,983 - 60,086,552 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1160,072,727 - 60,086,553 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl1157,505,005 - 57,518,933 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01160,668,085 - 60,681,692 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41156,587,304 - 56,600,874 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11156,645,293 - 56,658,463 (+)NCBI
Celera1154,624,418 - 54,637,992 (+)NCBICelera
Cytogenetic Map11q21NCBI
TAGLN3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383111,998,922 - 112,013,885 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl3111,998,739 - 112,013,887 (+)EnsemblGRCh38hg38GRCh38
GRCh373111,717,769 - 111,732,732 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363113,200,276 - 113,215,425 (+)NCBINCBI36hg18NCBI36
Build 343113,200,275 - 113,215,424NCBI
Celera3110,116,666 - 110,131,815 (+)NCBI
Cytogenetic Map3q13.2NCBI
HuRef3109,092,929 - 109,108,077 (+)NCBIHuRef
CHM1_13111,681,627 - 111,696,769 (+)NCBICHM1_1
T2T-CHM13v2.03114,720,030 - 114,734,995 (+)NCBI
Tagln3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391645,531,591 - 45,545,271 (-)NCBIGRCm39mm39
GRCm39 Ensembl1645,531,593 - 45,544,971 (-)Ensembl
GRCm381645,711,230 - 45,724,531 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1645,711,230 - 45,724,608 (-)EnsemblGRCm38mm10GRCm38
MGSCv371645,711,343 - 45,724,644 (-)NCBIGRCm37mm9NCBIm37
MGSCv361645,630,562 - 45,643,863 (-)NCBImm8
Celera1646,088,034 - 46,101,263 (-)NCBICelera
Cytogenetic Map16B5NCBI
Tagln3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542712,412,378 - 12,426,463 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542712,412,959 - 12,426,400 (+)NCBIChiLan1.0ChiLan1.0
TAGLN3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.13116,067,138 - 116,082,304 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v03109,143,253 - 109,158,367 (+)NCBIMhudiblu_PPA_v0panPan3
TAGLN3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13316,638,371 - 16,652,418 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3316,638,362 - 16,652,423 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3316,740,287 - 16,754,046 (+)NCBI
ROS_Cfam_1.03316,876,375 - 16,890,186 (+)NCBI
ROS_Cfam_1.0 Ensembl3316,876,360 - 16,890,183 (+)Ensembl
UMICH_Zoey_3.13316,686,506 - 16,700,298 (+)NCBI
UNSW_CanFamBas_1.03316,732,143 - 16,745,953 (+)NCBI
UU_Cfam_GSD_1.03317,277,135 - 17,290,982 (+)NCBI
Tagln3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602137,757,248 - 137,771,202 (-)NCBI
SpeTri2.0NW_004936834812,681 - 826,759 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TAGLN3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13147,740,917 - 147,754,849 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113147,740,913 - 147,754,845 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213157,488,973 - 157,500,986 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TAGLN3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12268,783,315 - 68,797,900 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2268,783,116 - 68,797,946 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604197,676,051 - 97,691,436 (+)NCBIVero_WHO_p1.0
Tagln3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473136,559,383 - 36,574,932 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462473136,560,502 - 36,575,129 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
RH138179  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21155,107,631 - 55,107,795 (+)MAPPERmRatBN7.2
Rnor_6.01157,513,063 - 57,513,226NCBIRnor6.0
Rnor_6.01160,080,728 - 60,080,891NCBIRnor6.0
Rnor_5.01160,675,831 - 60,675,994UniSTSRnor5.0
RGSC_v3.41156,595,050 - 56,595,213UniSTSRGSC3.4
Celera1154,632,164 - 54,632,327UniSTS
Cytogenetic Map11q21UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)112295940367959403Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)112328045668280456Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)112328045668280456Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112767241082846715Rat
1300130Rf20Renal function QTL 204.44kidney glomerulus integrity trait (VT:0010546)kidney glomerulus diameter (CMO:0001166)112952841860324829Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)112952841882566702Rat
2298551Neuinf10Neuroinflammation QTL 103.7nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)113123913478851519Rat
70180BpQTLcluster10Blood pressure QTL cluster 103.19arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)113491804179918041Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)114094618882566702Rat
2312566Glom20Glomerulus QTL 203.60.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)114428575982566702Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
1581572Uae35Urinary albumin excretion QTL 350.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
4889859Pur28Proteinuria QTL 2819.50.001total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)114545932375190161Rat
724561Plsm4Polydactyly-luxate syndrome (PLS) morphotypes QTL 40.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)115445753486241447Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:44
Count of miRNA genes:41
Interacting mature miRNAs:41
Transcripts:ENSRNOT00000002942
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hepatobiliary system nervous system renal system reproductive system respiratory system
High
Medium 25
Low 6 49 4
Below cutoff 3 13 4 2 2 23 4 10 6

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001035236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_031676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC108574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF459788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB795348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M84725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000002942   ⟹   ENSRNOP00000002942
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1155,099,762 - 55,113,485 (+)Ensembl
Rnor_6.0 Ensembl1157,505,005 - 57,518,933 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000087508   ⟹   ENSRNOP00000073828
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1160,073,383 - 60,086,552 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000090230   ⟹   ENSRNOP00000072985
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1155,099,743 - 55,113,456 (+)Ensembl
Rnor_6.0 Ensembl1160,072,727 - 60,086,553 (+)Ensembl
RefSeq Acc Id: NM_001035236   ⟹   NP_001030313
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21155,099,887 - 55,113,456 (+)NCBI
Rnor_6.01160,072,983 - 60,086,552 (+)NCBI
Rnor_5.01160,668,085 - 60,681,692 (+)NCBI
RGSC_v3.41156,587,304 - 56,600,874 (+)RGD
Celera1154,624,418 - 54,637,992 (+)RGD
Sequence:
RefSeq Acc Id: NM_031676   ⟹   NP_113864
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21155,100,253 - 55,113,456 (+)NCBI
Rnor_6.01160,073,349 - 60,086,552 (+)NCBI
Rnor_5.01160,668,085 - 60,681,692 (+)NCBI
RGSC_v3.41156,587,304 - 56,600,874 (+)RGD
Celera1154,624,785 - 54,637,992 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039088609   ⟹   XP_038944537
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21155,101,225 - 55,113,457 (+)NCBI
RefSeq Acc Id: XM_039088610   ⟹   XP_038944538
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21155,101,144 - 55,113,457 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001030313   ⟸   NM_001035236
- UniProtKB: P37805 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_113864   ⟸   NM_031676
- UniProtKB: P37805 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000072985   ⟸   ENSRNOT00000090230
RefSeq Acc Id: ENSRNOP00000073828   ⟸   ENSRNOT00000087508
RefSeq Acc Id: XP_038944538   ⟸   XM_039088610
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038944537   ⟸   XM_039088609
- Peptide Label: isoform X1
RefSeq Acc Id: ENSRNOP00000002942   ⟸   ENSRNOT00000002942
Protein Domains
Calponin-homology (CH)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P37805-F1-model_v2 AlphaFold P37805 1-199 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698133
Promoter ID:EPDNEW_R8656
Type:initiation region
Name:Tagln3_1
Description:transgelin 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01160,073,352 - 60,073,412EPDNEW

Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:69301 AgrOrtholog
BioCyc Gene G2FUF-21385 BioCyc
Ensembl Genes ENSRNOG00000002151 Ensembl, UniProtKB/Swiss-Prot
  ENSRNOG00000059539 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00000064186 Ensembl, ENTREZGENE
Ensembl Protein ENSRNOP00000002942 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000072985 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000073828 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000002942 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000087508 UniProtKB/TrEMBL
  ENSRNOT00000090230 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.418.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Calponin_repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CH-domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CH_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM22_calponin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TAGLN3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:63837 UniProtKB/Swiss-Prot
NCBI Gene 63837 ENTREZGENE
PANTHER PTHR18959:SF57 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Calponin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PF00307 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tagln3 PhenoGen
PRINTS SM22CALPONIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE CALPONIN_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CALPONIN_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PS50021 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SM00033 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47576 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGR TC205680
UniProt A0A0G2K6I5_RAT UniProtKB/TrEMBL
  P37805 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q09025 UniProtKB/Swiss-Prot
  Q8VHH3 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Tagln3  transgelin 3  LOC103693564  transgelin-3  Data Merged 737654 PROVISIONAL
2014-08-25 LOC103693564  transgelin-3      Symbol and Name status set to provisional 70820 PROVISIONAL
2002-06-10 Tagln3  transgelin 3      Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference