Ifrd1 (interferon-related developmental regulator 1) - Rat Genome Database

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Gene: Ifrd1 (interferon-related developmental regulator 1) Mus musculus
Analyze
Symbol: Ifrd1
Name: interferon-related developmental regulator 1
RGD ID: 69164
MGI Page MGI
Description: Predicted to enable RNA polymerase II-specific DNA-binding transcription factor binding activity. Acts upstream of or within several processes, including negative regulation of axonogenesis; skeletal muscle tissue regeneration; and striated muscle tissue development. Located in nucleus and sarcoplasm. Is expressed in several structures, including extraembryonic component; liver and biliary system; nasal cavity epithelium; nervous system; and tooth. Orthologous to human IFRD1 (interferon related developmental regulator 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: I; Ifnl; interferon-like; nerve growth factor-inducible protein PC4; PC; PC4; Ti; Tis7; TPA-induced sequence 7
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391240,253,128 - 40,273,184 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1240,251,566 - 40,298,503 (-)EnsemblGRCm39 Ensembl
GRCm381240,203,129 - 40,223,189 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1240,201,567 - 40,248,504 (-)EnsemblGRCm38mm10GRCm38
MGSCv371240,929,716 - 40,949,776 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361240,713,553 - 40,733,587 (-)NCBIMGSCv36mm8
Celera1241,631,260 - 41,651,320 (-)NCBICelera
Cytogenetic Map12B1NCBI
cM Map1218.06NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
(S)-amphetamine  (EXP)
1,2-dimethylhydrazine  (EXP)
1-chloro-2,4-dinitrobenzene  (ISO)
1-naphthyl isothiocyanate  (ISO)
1-nitropyrene  (ISO)
14-Deoxy-11,12-didehydroandrographolide  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3-dimethoxynaphthalene-1,4-dione  (ISO)
2,4-dinitrotoluene  (ISO)
2-butoxyethanol  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (EXP)
4-(ethoxymethylene)-2-phenyloxazol-5-one  (ISO)
6-propyl-2-thiouracil  (ISO)
acrolein  (ISO)
afimoxifene  (ISO)
aflatoxin B1  (EXP,ISO)
alpha-pinene  (ISO)
amphetamine  (ISO)
ampicillin  (ISO)
antimony(0)  (ISO)
antimycin A  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzene  (EXP)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bilirubin IXalpha  (ISO)
bisphenol A  (ISO)
bromobenzene  (ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (ISO)
carbamazepine  (ISO)
carbon nanotube  (EXP)
chloroprene  (EXP)
choline  (EXP)
ciguatoxin CTX1B  (EXP)
clofibrate  (EXP)
clofibric acid  (ISO)
cobalt dichloride  (ISO)
cocaine  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
cyclophosphamide  (ISO)
cyclosporin A  (ISO)
cylindrospermopsin  (ISO)
deguelin  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP,ISO)
diclofenac  (EXP)
dicrotophos  (ISO)
diethyl maleate  (ISO)
dioxygen  (EXP,ISO)
dipotassium bis[mu-tartrato(4-)]diantimonate(2-) trihydrate  (ISO)
diquat  (EXP)
disodium selenite  (ISO)
dorsomorphin  (ISO)
elesclomol  (ISO)
endosulfan  (ISO)
enzyme inhibitor  (ISO)
epoxiconazole  (EXP)
ethanol  (EXP)
ethyl methanesulfonate  (ISO)
fenarimol  (ISO)
fenpyroximate  (ISO)
fluoranthene  (EXP)
flusilazole  (ISO)
flutamide  (ISO)
folic acid  (EXP)
formaldehyde  (ISO)
fulvestrant  (ISO)
gentamycin  (ISO)
gliotoxin  (ISO)
graphite  (ISO)
hydralazine  (ISO)
hydrogen peroxide  (ISO)
hydroquinone  (ISO)
indometacin  (ISO)
inulin  (EXP)
isoprenaline  (EXP)
isotretinoin  (ISO)
L-methionine  (EXP)
lead diacetate  (ISO)
lipopolysaccharide  (ISO)
mercury atom  (ISO)
mercury dibromide  (ISO)
mercury dichloride  (ISO)
mercury(0)  (ISO)
metacetamol  (EXP)
methapyrilene  (ISO)
methyl methanesulfonate  (ISO)
methylisothiazolinone  (ISO)
methylmercury chloride  (ISO)
methylparaben  (ISO)
mitomycin C  (EXP)
N-acetyl-L-cysteine  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-methyl-N'-nitro-N-nitrosoguanidine  (ISO)
N-methyl-N-nitrosourea  (EXP)
N-nitrosodimethylamine  (ISO)
N1'-[2-[[5-[(dimethylamino)methyl]-2-furanyl]methylthio]ethyl]-N1-methyl-2-nitroethene-1,1-diamine  (ISO)
nefazodone  (ISO)
nickel dichloride  (ISO)
nickel sulfate  (ISO)
nimesulide  (ISO)
ochratoxin A  (ISO)
ozone  (EXP,ISO)
p-chloromercuribenzoic acid  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (ISO)
phenobarbital  (EXP,ISO)
phenylmercury acetate  (ISO)
phorone  (ISO)
picoxystrobin  (ISO)
piperonyl butoxide  (ISO)
pirinixic acid  (EXP,ISO)
progesterone  (ISO)
propiconazole  (EXP,ISO)
pyrimidifen  (ISO)
quercetin  (EXP)
raloxifene  (ISO)
ranitidine  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
sarin  (ISO)
SB 431542  (ISO)
sevoflurane  (ISO)
silicon dioxide  (EXP,ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (ISO)
Soman  (ISO)
sulindac sulfide  (ISO)
T-2 toxin  (ISO)
tamoxifen  (EXP)
tetrachloromethane  (EXP,ISO)
thapsigargin  (ISO)
thifluzamide  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
Tributyltin oxide  (ISO)
trichloroethene  (EXP,ISO)
troglitazone  (ISO)
trovafloxacin  (EXP,ISO)
tunicamycin  (ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)
vincristine  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IDA)
nucleus  (IBA,IDA)
sarcoplasm  (IDA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Genetic mapping of 262 loci derived from expressed sequences in a murine interspecific cross using single-strand conformational polymorphism analysis. Brady KP, etal., Genome Res 1997 Nov;7(11):1085-93.
2. Cloning of the human interferon-related developmental regulator (IFRD1) gene coding for the PC4 protein, a member of a novel family of developmentally regulated genes. Buanne P, etal., Genomics 1998 Jul 15;51(2):233-42.
3. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
4. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
5. MGDs mouse GO annotations MGD data from the GO Consortium
6. MGD IEA MGD IEA
7. Large-scale screen for genes controlling mammalian embryogenesis, using high-throughput gene expression analysis in mouse embryos. Neidhardt L, etal., Mech Dev 2000 Nov;98(1-2):77-94.
8. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
9. Mouse MP Annotation Import Pipeline RGD automated import pipeline
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:2797820   PMID:3185562   PMID:6179042   PMID:7756174   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12198164   PMID:12451703   PMID:12477932   PMID:12520002  
PMID:14610273   PMID:15060170   PMID:15743821   PMID:15782199   PMID:16085642   PMID:16141072   PMID:16141073   PMID:16204248   PMID:16602821   PMID:17634072   PMID:18052984   PMID:19242412  
PMID:20861213   PMID:21127072   PMID:21267068   PMID:21677750   PMID:21723850   PMID:21873635   PMID:23517917   PMID:25059825   PMID:26391411   PMID:27856249   PMID:28107769   PMID:29091322  
PMID:30460894   PMID:30606922   PMID:30728831   PMID:32768422   PMID:32992150   PMID:34321999   PMID:34815492   PMID:37603466  


Genomics

Comparative Map Data
Ifrd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391240,253,128 - 40,273,184 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1240,251,566 - 40,298,503 (-)EnsemblGRCm39 Ensembl
GRCm381240,203,129 - 40,223,189 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1240,201,567 - 40,248,504 (-)EnsemblGRCm38mm10GRCm38
MGSCv371240,929,716 - 40,949,776 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361240,713,553 - 40,733,587 (-)NCBIMGSCv36mm8
Celera1241,631,260 - 41,651,320 (-)NCBICelera
Cytogenetic Map12B1NCBI
cM Map1218.06NCBI
IFRD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387112,423,174 - 112,477,203 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7112,422,887 - 112,481,017 (+)EnsemblGRCh38hg38GRCh38
GRCh377112,063,229 - 112,117,258 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367111,850,462 - 111,903,483 (+)NCBINCBI36Build 36hg18NCBI36
Build 347111,684,465 - 111,710,195NCBI
Celera7106,875,197 - 106,928,212 (+)NCBICelera
Cytogenetic Map7q31.1NCBI
HuRef7106,430,932 - 106,484,922 (+)NCBIHuRef
CHM1_17111,997,329 - 112,051,377 (+)NCBICHM1_1
T2T-CHM13v2.07113,741,458 - 113,795,506 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27111,431,426 - 111,485,763 (+)NCBI
Ifrd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8662,996,560 - 63,044,996 (-)NCBIGRCr8
mRatBN7.2657,269,395 - 57,317,833 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl657,269,384 - 57,288,990 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx657,548,278 - 57,567,788 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0657,863,225 - 57,882,735 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0657,338,750 - 57,358,251 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0660,132,025 - 60,151,354 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl660,132,024 - 60,151,420 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0669,720,077 - 69,739,406 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera656,310,925 - 56,330,428 (-)NCBICelera
Cytogenetic Map6q21NCBI
Ifrd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541016,176,431 - 16,222,006 (+)NCBIChiLan1.0ChiLan1.0
IFRD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26149,277,375 - 149,303,117 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan171,287,871 - 1,313,365 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07104,412,763 - 104,438,490 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17117,115,187 - 117,141,887 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7117,115,187 - 117,141,887 (+)Ensemblpanpan1.1panPan2
IFRD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11452,053,423 - 52,078,419 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1452,053,434 - 52,092,365 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1451,507,209 - 51,532,192 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01452,099,273 - 52,124,260 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1452,099,290 - 52,124,260 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11452,117,716 - 52,142,462 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01451,797,409 - 51,822,401 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01452,173,709 - 52,198,482 (+)NCBIUU_Cfam_GSD_1.0
Ifrd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511871,793,649 - 71,813,100 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936795573,581 - 594,278 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936795573,740 - 594,316 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IFRD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1833,193,426 - 33,248,297 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11833,198,002 - 33,248,912 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21835,914,259 - 35,964,925 (-)NCBISscrofa10.2Sscrofa10.2susScr3
IFRD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12181,266,685 - 81,292,434 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2181,266,667 - 81,294,419 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604222,522,231 - 22,549,018 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ifrd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473917,442,191 - 17,466,909 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473917,442,191 - 17,492,191 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ifrd1
783 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1330
Count of miRNA genes:641
Interacting mature miRNAs:780
Transcripts:ENSMUST00000001672, ENSMUST00000164047, ENSMUST00000164354, ENSMUST00000165027, ENSMUST00000169319, ENSMUST00000169926, ENSMUST00000170119, ENSMUST00000170752, ENSMUST00000171530, ENSMUST00000171553
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12541844077031203Mouse
1301163Eae16_msusceptibility to experimental allergic encephalomyelitis 16 (mouse)Not determined12772315841723301Mouse
1301037Cd4ts5_mCD4 T cell subset 5 (mouse)Not determined12835244442352581Mouse
1301723Fcsa7_mfemoral cross-sectional area 7 (mouse)Not determined12949100443491112Mouse
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12955000084146774Mouse
14746972Manh72_mmandible shape 72 (mouse)121061528144615281Mouse
10401249Bglu15_mblood glucose level 15 (mouse)Not determined121062064244620809Mouse
13524843Ppiq8_mprepulse inhibition QTL 8 (mouse)121104319450945796Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
4141516slwr_mslowlearner (mouse)Not determined1239247546392614Mouse
13524839Ppiq10_mprepulse inhibition QTL 10 (mouse)121304319554945798Mouse
10043977Obq34_mobesity QTL 34 (mouse)Not determined121514733149147331Mouse
1558978Cplaq10_mcircadian period of locomotor activity 10 (mouse)Not determined121534102679040364Mouse
26884413Bzwq9_mbi-zygomatic width QTL 9, 10 week (mouse)121615000147746783Mouse
1301574Lmblgq5_mlimb length QTL 5 (mouse)Not determined121759644780956883Mouse
15039339Nmrs29_mNAFLD-associated magnetic resonance shift 29 (mouse)121782585251825852Mouse
10043848Hdlq90_mHDL QTL 90 (mouse)Not determined121783993951840081Mouse
1300870Ath18_matherosclerosis 18 (mouse)Not determined121825996652260067Mouse
12904956Edlmmq10_mextensor digitorum longus muscle mass QTL 10 (mouse)121973983353739833Mouse
1302172Skts5_mskin tumor susceptibility 5 (mouse)Not determined122214886656149016Mouse
1301989Hdlq18_mHDL QTL 18 (mouse)Not determined122916068563160884Mouse
1300636Gct2_mgranulosa cell tumorigenesis 2 (mouse)Not determined122916068563160884Mouse
4141843Moen3_mmodifier of engrailed QTL 3 (mouse)Not determined122980158463801733Mouse
14747008Mancz10_mmandible centroid size 10 (mouse)122986352263863522Mouse
10402492Dipa8_mdrug induced psychomotor activation 8 (mouse)Not determined123493387268934019Mouse
1300818Bbaa10_mB.burgdorferi-associated arthritis 10 (mouse)Not determined123509100465511019Mouse
12879483Asp1_maudiogenic seizure prone 1 (mouse)123528549646801733Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse

Markers in Region
UniSTS:224744  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381240,203,228 - 40,203,427UniSTSGRCm38
MGSCv371240,929,815 - 40,930,014UniSTSGRCm37
Celera1241,631,359 - 41,631,558UniSTS
Cytogenetic Map12B1UniSTS
cM Map1221.5UniSTS
Ifrd1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381240,203,131 - 40,203,349UniSTSGRCm38
MGSCv371240,929,718 - 40,929,936UniSTSGRCm37
Celera1241,631,262 - 41,631,480UniSTS
Cytogenetic Map12B1UniSTS
cM Map1221.5UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_013562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_181992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_181993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_181994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_181995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_181996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC157571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC174598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK078888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC037013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC043723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  V00756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X17400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000001672   ⟹   ENSMUSP00000001672
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1240,251,566 - 40,273,188 (-)Ensembl
GRCm38.p6 Ensembl1240,201,567 - 40,223,189 (-)Ensembl
RefSeq Acc Id: ENSMUST00000164047   ⟹   ENSMUSP00000127553
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1240,253,130 - 40,257,061 (-)Ensembl
GRCm38.p6 Ensembl1240,203,131 - 40,207,062 (-)Ensembl
RefSeq Acc Id: ENSMUST00000164354   ⟹   ENSMUSP00000130846
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1240,266,188 - 40,298,503 (-)Ensembl
GRCm38.p6 Ensembl1240,216,189 - 40,248,504 (-)Ensembl
RefSeq Acc Id: ENSMUST00000165027   ⟹   ENSMUSP00000133028
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1240,253,361 - 40,267,512 (-)Ensembl
GRCm38.p6 Ensembl1240,203,362 - 40,217,513 (-)Ensembl
RefSeq Acc Id: ENSMUST00000169319   ⟹   ENSMUSP00000130824
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1240,264,093 - 40,298,485 (-)Ensembl
GRCm38.p6 Ensembl1240,214,094 - 40,248,486 (-)Ensembl
RefSeq Acc Id: ENSMUST00000169926   ⟹   ENSMUSP00000127673
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1240,263,979 - 40,298,078 (-)Ensembl
GRCm38.p6 Ensembl1240,213,980 - 40,248,079 (-)Ensembl
RefSeq Acc Id: ENSMUST00000170119
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1240,253,319 - 40,254,641 (-)Ensembl
GRCm38.p6 Ensembl1240,203,320 - 40,204,642 (-)Ensembl
RefSeq Acc Id: ENSMUST00000170752
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1240,265,361 - 40,273,184 (-)Ensembl
GRCm38.p6 Ensembl1240,215,362 - 40,223,185 (-)Ensembl
RefSeq Acc Id: ENSMUST00000171530   ⟹   ENSMUSP00000128635
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1240,253,918 - 40,272,961 (-)Ensembl
GRCm38.p6 Ensembl1240,203,919 - 40,222,962 (-)Ensembl
RefSeq Acc Id: ENSMUST00000171553
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1240,267,157 - 40,273,148 (-)Ensembl
GRCm38.p6 Ensembl1240,217,158 - 40,223,149 (-)Ensembl
RefSeq Acc Id: NM_013562   ⟹   NP_038590
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391240,253,128 - 40,273,184 (-)NCBI
GRCm381240,203,129 - 40,223,189 (-)ENTREZGENE
MGSCv371240,929,716 - 40,949,776 (-)RGD
Celera1241,631,260 - 41,651,320 (-)RGD
cM Map12 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_181992
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391240,253,128 - 40,273,184 (-)NCBI
RefSeq Acc Id: NR_181993
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391240,253,128 - 40,273,184 (-)NCBI
RefSeq Acc Id: NR_181994
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391240,253,128 - 40,273,184 (-)NCBI
RefSeq Acc Id: NR_181995
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391240,253,128 - 40,273,184 (-)NCBI
RefSeq Acc Id: NR_181996
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391240,253,128 - 40,273,184 (-)NCBI
RefSeq Acc Id: NP_038590   ⟸   NM_013562
- UniProtKB: P70228 (UniProtKB/Swiss-Prot),   P21835 (UniProtKB/Swiss-Prot),   Q80XM4 (UniProtKB/Swiss-Prot),   P19182 (UniProtKB/Swiss-Prot),   E9PVS0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000130846   ⟸   ENSMUST00000164354
RefSeq Acc Id: ENSMUSP00000127553   ⟸   ENSMUST00000164047
RefSeq Acc Id: ENSMUSP00000001672   ⟸   ENSMUST00000001672
RefSeq Acc Id: ENSMUSP00000128635   ⟸   ENSMUST00000171530
RefSeq Acc Id: ENSMUSP00000133028   ⟸   ENSMUST00000165027
RefSeq Acc Id: ENSMUSP00000130824   ⟸   ENSMUST00000169319
RefSeq Acc Id: ENSMUSP00000127673   ⟸   ENSMUST00000169926
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P19182-F1-model_v2 AlphaFold P19182 1-449 view protein structure

Promoters
RGD ID:8678192
Promoter ID:EPDNEW_M17127
Type:multiple initiation site
Name:Ifrd1_1
Description:Mus musculus interferon-related developmental regulator 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381240,223,185 - 40,223,245EPDNEW
RGD ID:6823069
Promoter ID:MM_KWN:11545
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Lung,   MEF_B4,   MEF_B6
Transcripts:NM_013562
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361240,949,686 - 40,950,442 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1316717 AgrOrtholog
Ensembl Genes ENSMUSG00000001627 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000001672 ENTREZGENE
  ENSMUST00000001672.12 UniProtKB/Swiss-Prot
  ENSMUST00000164047.2 UniProtKB/TrEMBL
  ENSMUST00000164354.2 UniProtKB/TrEMBL
  ENSMUST00000165027.9 UniProtKB/TrEMBL
  ENSMUST00000169319.8 UniProtKB/TrEMBL
  ENSMUST00000169926.8 UniProtKB/TrEMBL
  ENSMUST00000171530.8 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IFRD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Interferon-rel_develop_reg_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Interferon-rel_develop_reg_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:15982 UniProtKB/Swiss-Prot
MGD MGI:1316717 ENTREZGENE
NCBI Gene 15982 ENTREZGENE
PANTHER INTERFERON-RELATED DEVELOPMENTAL REGULATOR 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12354 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam IFRD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IFRD_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ifrd1 PhenoGen
Superfamily-SCOP SSF48371 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt E9PVS0 ENTREZGENE, UniProtKB/TrEMBL
  E9Q1E6_MOUSE UniProtKB/TrEMBL
  E9Q949_MOUSE UniProtKB/TrEMBL
  E9QA38_MOUSE UniProtKB/TrEMBL
  E9QA50_MOUSE UniProtKB/TrEMBL
  F6TBT6_MOUSE UniProtKB/TrEMBL
  IFRD1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  P21835 ENTREZGENE
  P70228 ENTREZGENE
  Q80XM4 ENTREZGENE
UniProt Secondary P21835 UniProtKB/Swiss-Prot
  P70228 UniProtKB/Swiss-Prot
  Q80XM4 UniProtKB/Swiss-Prot