Klf3 (Kruppel-like factor 3 (basic)) - Rat Genome Database

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Gene: Klf3 (Kruppel-like factor 3 (basic)) Mus musculus
Analyze
Symbol: Klf3
Name: Kruppel-like factor 3 (basic)
RGD ID: 69111
MGI Page MGI
Description: Exhibits RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in negative regulation of transcription by RNA polymerase II. Predicted to localize to nucleoplasm. Is expressed in several structures, including alimentary system; brain; early conceptus; genitourinary system; and limb. Orthologous to human KLF3 (Kruppel like factor 3); INTERACTS WITH 1,2-dimethylhydrazine; 17beta-hydroxy-5alpha-androstan-3-one; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 9930027G08Rik; AL024007; basic krueppel-like factor; BKL; Bklf; CACCC-box-binding protein BKLF; Krueppel-like factor 3; MGC151315; Tef-2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39564,960,864 - 64,990,246 (+)NCBIGRCm39mm39
GRCm39 Ensembl564,960,731 - 64,990,244 (+)Ensembl
GRCm38564,803,521 - 64,832,901 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl564,803,388 - 64,832,901 (+)EnsemblGRCm38mm10GRCm38
MGSCv37565,194,762 - 65,221,368 (+)NCBIGRCm37mm9NCBIm37
MGSCv36565,082,658 - 65,109,264 (+)NCBImm8
Celera562,088,896 - 62,102,287 (+)NCBICelera
Cytogenetic Map5C3.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal aorta morphology  (IAGP)
abnormal aortic valve morphology  (IAGP)
abnormal blood flow velocity  (IAGP)
abnormal blood pressure regulation  (IAGP)
abnormal cell differentiation  (IAGP)
abnormal epididymal fat pad morphology  (IAGP)
abnormal gonadal fat pad morphology  (IAGP)
abnormal heart left atrium morphology  (IAGP)
abnormal heart left ventricle morphology  (IAGP)
abnormal heart right atrium morphology  (IAGP)
abnormal interventricular septum morphology  (IAGP)
abnormal retroperitoneal fat pad morphology  (IAGP)
abnormal ventricle myocardium morphology  (IAGP)
anemia  (IAGP)
aortic valve stenosis  (IAGP)
atrial septal defect  (IAGP)
bicuspid aortic valve  (IAGP)
cardiac hypertrophy  (IAGP)
congestive heart failure  (IAGP)
decreased abdominal fat pad weight  (IAGP)
decreased body weight  (IAGP)
decreased erythrocyte cell number  (IAGP)
decreased hemoglobin content  (IAGP)
decreased mean systemic arterial blood pressure  (IAGP)
decreased percent body fat/body weight  (IAGP)
decreased survivor rate  (IAGP)
decreased systemic arterial blood pressure  (IAGP)
decreased total body fat amount  (IAGP)
embryonic lethality during organogenesis, incomplete penetrance  (IAGP)
enlarged heart left atrium  (IAGP)
enlarged heart right atrium  (IAGP)
hematoma  (IAGP)
hypervolemia  (IAGP)
hypotension  (IAGP)
increased atrioventricular cushion size  (IAGP)
increased brain weight  (IAGP)
increased cardiac muscle contractility  (IAGP)
increased cardiac output  (IAGP)
increased heart right ventricle size  (IAGP)
increased heart weight  (IAGP)
increased kidney weight  (IAGP)
increased leukocyte cell number  (IAGP)
increased liver weight  (IAGP)
increased lung weight  (IAGP)
increased oxygen consumption  (IAGP)
increased red blood cell distribution width  (IAGP)
increased spleen weight  (IAGP)
infertility  (IAGP)
lethality during fetal growth through weaning, complete penetrance  (IAGP)
lethality throughout fetal growth and development, complete penetrance  (IAGP)
lethality throughout fetal growth and development, incomplete penetrance  (IAGP)
neonatal lethality, incomplete penetrance  (IAGP)
no abnormal phenotype detected  (IEA)
postnatal lethality, incomplete penetrance  (IAGP)
premature death  (IAGP)
preweaning lethality, incomplete penetrance  (IAGP)
pulmonary valve regurgitation  (IAGP)
reticulocytosis  (IAGP)
slow postnatal weight gain  (IAGP)
thick aortic valve cusps  (IAGP)
tricuspid valve regurgitation  (IAGP)
ventricular septal defect  (IAGP)
References

Additional References at PubMed
PMID:7671812   PMID:8657145   PMID:8889548   PMID:10349636   PMID:10366853   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12904583   PMID:14610273   PMID:15782199   PMID:15820306  
PMID:15829312   PMID:16141072   PMID:16141073   PMID:16940173   PMID:17130451   PMID:17283065   PMID:17967808   PMID:18287559   PMID:18391014   PMID:18687676   PMID:18799693   PMID:19799774  
PMID:20059953   PMID:20404088   PMID:20412781   PMID:20696915   PMID:21267068   PMID:21297003   PMID:21360637   PMID:21731673   PMID:21873635   PMID:22003205   PMID:22115574   PMID:22219353  
PMID:22711990   PMID:23332504   PMID:23633521   PMID:23716600   PMID:23754749   PMID:23874215   PMID:24106088   PMID:25015818   PMID:25659434   PMID:26092481   PMID:26238476   PMID:27226561  
PMID:28541545   PMID:29348304   PMID:31077711   PMID:32027825   PMID:32213596   PMID:32385917   PMID:32523103   PMID:32990380  


Genomics

Comparative Map Data
Klf3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39564,960,864 - 64,990,246 (+)NCBIGRCm39mm39
GRCm39 Ensembl564,960,731 - 64,990,244 (+)Ensembl
GRCm38564,803,521 - 64,832,901 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl564,803,388 - 64,832,901 (+)EnsemblGRCm38mm10GRCm38
MGSCv37565,194,762 - 65,221,368 (+)NCBIGRCm37mm9NCBIm37
MGSCv36565,082,658 - 65,109,264 (+)NCBImm8
Celera562,088,896 - 62,102,287 (+)NCBICelera
Cytogenetic Map5C3.1NCBI
KLF3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl438,664,197 - 38,701,517 (+)EnsemblGRCh38hg38GRCh38
GRCh38438,664,079 - 38,701,517 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37438,665,820 - 38,703,138 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36438,342,185 - 38,379,524 (+)NCBINCBI36hg18NCBI36
Build 34438,488,388 - 38,522,964NCBI
Celera439,107,001 - 39,144,340 (+)NCBI
Cytogenetic Map4p14NCBI
HuRef437,989,129 - 38,026,462 (+)NCBIHuRef
CHM1_1438,664,914 - 38,702,230 (+)NCBICHM1_1
Klf3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21443,474,767 - 43,505,801 (-)NCBI
Rnor_6.0 Ensembl1445,142,769 - 45,165,207 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01445,142,769 - 45,173,753 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01444,952,288 - 44,975,148 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41446,203,638 - 46,226,077 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1442,618,174 - 42,640,598 (-)NCBICelera
Cytogenetic Map14p11NCBI
Klf3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554438,525,510 - 8,548,499 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554438,526,371 - 8,549,510 (-)NCBIChiLan1.0ChiLan1.0
KLF3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1438,846,989 - 38,883,480 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl438,846,989 - 38,883,480 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0432,992,702 - 33,029,420 (+)NCBIMhudiblu_PPA_v0panPan3
KLF3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1373,627,112 - 73,663,702 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl373,629,312 - 73,664,182 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha376,174,252 - 76,210,837 (-)NCBI
ROS_Cfam_1.0374,406,717 - 74,443,317 (-)NCBI
UMICH_Zoey_3.1373,673,626 - 73,710,207 (-)NCBI
UNSW_CanFamBas_1.0373,819,087 - 73,855,660 (-)NCBI
UU_Cfam_GSD_1.0374,200,168 - 74,236,753 (-)NCBI
Klf3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528539,781,800 - 39,814,423 (-)NCBI
SpeTri2.0NW_0049364826,483,813 - 6,516,435 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KLF3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl830,024,797 - 30,060,979 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1830,024,978 - 30,060,981 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2831,493,372 - 31,537,659 (+)NCBISscrofa10.2Sscrofa10.2susScr3
KLF3
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12711,602,579 - 11,640,329 (-)NCBI
ChlSab1.1 Ensembl2711,601,989 - 11,640,455 (-)Ensembl
Klf3
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248407,172,838 - 7,204,783 (+)NCBI

Position Markers
Klf3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38564,828,980 - 64,829,160UniSTSGRCm38
MGSCv37565,220,219 - 65,220,399UniSTSGRCm37
Celera562,101,138 - 62,101,318UniSTS
Cytogenetic Map5C3.1UniSTS
cM MapUN UniSTS
cM Map5 UniSTS
RH141772  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38564,829,297 - 64,829,516UniSTSGRCm38
MGSCv37565,220,536 - 65,220,755UniSTSGRCm37
Celera562,101,455 - 62,101,674UniSTS
Cytogenetic Map5C3.1UniSTS
Klf3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map5C3.1UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301693Sle6_msystemic lupus erythematosus susceptibility 6 (mouse)Not determined5884069387693978Mouse
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526236236138457140Mouse
1301555Alcp10_malcohol preference locus 10 (mouse)Not determined53086693364867138Mouse
1301403Alcp9_malcohol preference locus 9 (mouse)Not determined53086693364867138Mouse
11353827Hplq1_mhot plate latency 1 (mouse)53141311665413116Mouse
4140990Lgq6_mlate growth QTL 6 (mouse)Not determined31975890100630065Mouse
4141219W10q16_mweight 10 weeks QTL 16 (mouse)Not determined31975890100630065Mouse
10043995Hbnr9_mHeligmosomoides bakeri nematode resistance 9 (mouse)Not determined53333132567331534Mouse
1301845Lxw4_mlupus BXSB x NZW 4 (mouse)Not determined53553712069537252Mouse
11049558Lmr24b_mleishmaniasis resistance 24b (mouse)53553712069537252Mouse
11049559Lmr24c_mleishmaniasis resistance 24c (mouse)53553712069537252Mouse
11049561Lmr24e_mleishmaniasis resistance 24e (mouse)53553712069537252Mouse
1301223Hdlq7_mHDL QTL 7 (mouse)Not determined53569722669697372Mouse
13464252Ahl10_mage related hearing loss, early onset 10 (mouse)53569722669697372Mouse
4141647Hrvhf1_mheart rate variability, high frequency 1 (mouse)Not determined3627608170276081Mouse
1301170Lith13_mlithogenic gene 13 (mouse)Not determined53633714470337256Mouse
1301524Lmb2_mlupus in MRL and B6 F2 cross (mouse)Not determined537424144112317856Mouse
13464246Ahl11_mage related hearing loss, early onset 11 (mouse)53748643571486554Mouse
1300951Gbvq1_mgallstone bladder volume QTL 1 (mouse)Not determined53795433971954456Mouse
13464245Ahl12_mage related hearing loss, early onset 12 (mouse)53795433971954456Mouse
1301698Pcfm4_mperiosteal circumference and femur length 4 (mouse)Not determined54442850078428622Mouse
13207584Mwmlpt4_mMorris water maze latency to platform, training, 4 (mouse)54616526380165263Mouse
13207588Mwmlpa4_mMorris water maze latency to platform, all, 4 (mouse)54616526380165263Mouse
14746981Manh57_mmandible shape 57 (mouse)54701239981012399Mouse
1300854Lmr3_mleishmaniasis resistance 3 (mouse)Not determined55253712081227149Mouse
11041665Lmr24_mleishmaniasis resistance 24 (mouse)552537120107173175Mouse
11041899Lmr24a_mleishmaniasis resistance 24a (mouse)552537120107173175Mouse
4142064Tmc1m4_mTmc1 modifier 4 (mouse)Not determined554342835126924008Mouse
1301243Bmd2_mbone mineral density 2 (mouse)Not determined555230992100307666Mouse
4142317Rgcs1_mretinal ganglion cell susceptible 1 (mouse)Not determined55230992108614761Mouse
13464248Ahl13_mage related hearing loss, early onset 13 (mouse)55548853189488652Mouse
10043962Obq27_mobesity QTL 27 (mouse)Not determined55612831290128312Mouse
10044005Ahl7_mage related hearing loss 7 (mouse)Not determined55816984192169980Mouse
11040589Lmr3a_mleishmaniasis resistance 3a (mouse)55945495493455133Mouse
11040590Lmr3b_mleishmaniasis resistance 3b (mouse)55945495493455133Mouse
11040591Lmr3c_mleishmaniasis resistance 3c (mouse)55945495493455133Mouse
11040592Lmr3d_mleishmaniasis resistance 3d (mouse)55945495493455133Mouse
1301843Listr1_mlisteriosis resistance 1 (mouse)Not determined56009823494098356Mouse
13464247Ahl14_mage related hearing loss, early onset 14 (mouse)56025521594255313Mouse
4142428Modvl1_mmodifier of vacuolated lens 1 (mouse)Not determined6250272196502841Mouse
1301010ahl2_mage related hearing loss 2 (mouse)Not determined56250272196502841Mouse
11252124Modvl6_mmodifier of vacuolated lens 6 (mouse)56250272196502841Mouse
13464250Ahl15_mage related hearing loss, early onset 15 (mouse)56250272196502841Mouse
10045972Tir5_mtrypanosome infection response 5 (mouse)Not determined563548099104239199Mouse
11049560Lmr24d_mleishmaniasis resistance 24d (mouse)56422703098227149Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:426
Count of miRNA genes:247
Interacting mature miRNAs:282
Transcripts:ENSMUST00000165536, ENSMUST00000166409
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_008453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_165035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006503751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC130535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ810304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ810305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ810306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ867251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK007959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK010713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK029070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK046659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK081467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK136516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK143838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK157576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC116938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC119214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ981866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U36340 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000165536   ⟹   ENSMUSP00000129363
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl564,803,388 - 64,832,901 (+)Ensembl
RefSeq Acc Id: ENSMUST00000166409   ⟹   ENSMUSP00000128429
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl564,812,339 - 64,829,482 (+)Ensembl
RefSeq Acc Id: ENSMUST00000196764
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl564,815,850 - 64,825,429 (+)Ensembl
RefSeq Acc Id: ENSMUST00000197869
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl564,812,340 - 64,819,319 (+)Ensembl
RefSeq Acc Id: ENSMUST00000197879   ⟹   ENSMUSP00000142369
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl564,812,384 - 64,822,243 (+)Ensembl
RefSeq Acc Id: ENSMUST00000198946   ⟹   ENSMUSP00000142651
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl564,826,809 - 64,829,550 (+)Ensembl
RefSeq Acc Id: ENSMUST00000200384   ⟹   ENSMUSP00000142668
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl564,822,348 - 64,827,167 (+)Ensembl
RefSeq Acc Id: ENSMUST00000200587
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl564,803,577 - 64,823,109 (+)Ensembl
RefSeq Acc Id: ENSMUST00000200677
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl564,803,622 - 64,822,172 (+)Ensembl
RefSeq Acc Id: NM_008453   ⟹   NP_032479
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39564,960,864 - 64,990,244 (+)NCBI
GRCm38564,803,521 - 64,832,901 (+)NCBI
MGSCv37565,194,762 - 65,221,368 (+)RGD
Celera562,088,896 - 62,102,287 (+)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_165035
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39564,960,864 - 64,990,244 (+)NCBI
GRCm38564,803,521 - 64,832,901 (+)NCBI
RefSeq Acc Id: XM_006503751   ⟹   XP_006503814
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39564,969,670 - 64,990,246 (+)NCBI
GRCm38564,812,323 - 64,832,072 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_032479   ⟸   NM_008453
- UniProtKB: Q60980 (UniProtKB/Swiss-Prot),   Q545J5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006503814   ⟸   XM_006503751
- Peptide Label: isoform X1
- UniProtKB: Q60980 (UniProtKB/Swiss-Prot),   Q545J5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000142651   ⟸   ENSMUST00000198946
RefSeq Acc Id: ENSMUSP00000142369   ⟸   ENSMUST00000197879
RefSeq Acc Id: ENSMUSP00000128429   ⟸   ENSMUST00000166409
RefSeq Acc Id: ENSMUSP00000129363   ⟸   ENSMUST00000165536
RefSeq Acc Id: ENSMUSP00000142668   ⟸   ENSMUST00000200384
Protein Domains
C2H2-type

Promoters
RGD ID:6886746
Promoter ID:EPDNEW_M6824
Type:initiation region
Name:Klf3_1
Description:Mus musculus Kruppel-like factor 3 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M6825  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38564,803,523 - 64,803,583EPDNEW
RGD ID:6886748
Promoter ID:EPDNEW_M6825
Type:single initiation site
Name:Klf3_2
Description:Mus musculus Kruppel-like factor 3 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M6824  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38564,811,182 - 64,811,242EPDNEW
RGD ID:6837203
Promoter ID:MM_KWN:42360
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:AK049070_C230096K16RIK,   ENSMUST00000031074,   UC008XMR.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36565,194,096 - 65,194,972 (+)MPROMDB
RGD ID:6837769
Promoter ID:MM_KWN:42361
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:UC008XMT.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36565,202,706 - 65,204,002 (+)MPROMDB
RGD ID:6837772
Promoter ID:MM_KWN:42362
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour,   Kidney,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:UC008XMU.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36565,206,501 - 65,207,697 (+)MPROMDB
RGD ID:6847923
Promoter ID:MM_ACW:37969
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour,   Liver
Transcripts:KLF3.ISEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36565,213,176 - 65,213,676 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1342773 AgrOrtholog
Ensembl Genes ENSMUSG00000029178 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000128429 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000129363 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000142369 UniProtKB/TrEMBL
  ENSMUSP00000142651 UniProtKB/TrEMBL
  ENSMUSP00000142668 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000165536 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000166409 UniProtKB/Swiss-Prot
  ENSMUST00000197879 UniProtKB/TrEMBL
  ENSMUST00000198946 UniProtKB/TrEMBL
  ENSMUST00000200384 UniProtKB/TrEMBL
InterPro Znf_C2H2_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:16599 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1342773 ENTREZGENE
NCBI Gene 16599 ENTREZGENE
Pfam zf-C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Klf3 PhenoGen
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JDH4_MOUSE UniProtKB/TrEMBL
  A0A0G2JE66_MOUSE UniProtKB/TrEMBL
  A0A0G2JE81_MOUSE UniProtKB/TrEMBL
  KLF3_MOUSE UniProtKB/Swiss-Prot
  Q545J5 ENTREZGENE, UniProtKB/TrEMBL
  Q5K2K0_MOUSE UniProtKB/TrEMBL
  Q60980 ENTREZGENE
  Q8BV07_MOUSE UniProtKB/TrEMBL