Nr1i2 (nuclear receptor subfamily 1, group I, member 2) - Rat Genome Database

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Gene: Nr1i2 (nuclear receptor subfamily 1, group I, member 2) Mus musculus
Symbol: Nr1i2
Name: nuclear receptor subfamily 1, group I, member 2
RGD ID: 69106
Description: Predicted to enable several functions, including DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and nuclear receptor binding activity. Acts upstream of or within positive regulation of gene expression. Predicted to be located in intermediate filament cytoskeleton and nuclear body. Is expressed in several structures, including branchial arch; ear; genitourinary system; heart; and nervous system. Orthologous to human NR1I2 (nuclear receptor subfamily 1 group I member 2); INTERACTS WITH (+)-schisandrin B; (3-phenoxyphenyl)methanol; (E,E)-germacrone.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: mP; mPXR; nuclear receptor subfamily 1 group I member 2; orphan nuclear receptor PXR; P; Pregnane X receptor; PXR; PXR.1; PXR.2; PXR1; S; SXR
RGD Orthologs
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
GRCm391638,068,711 - 38,115,211 (-)NCBIGRCm39mm39
GRCm39 Ensembl1638,068,685 - 38,115,186 (-)Ensembl
GRCm381638,248,349 - 38,294,849 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1638,248,323 - 38,294,824 (-)EnsemblGRCm38mm10GRCm38
MGSCv371638,248,435 - 38,294,910 (-)NCBIGRCm37mm9NCBIm37
MGSCv361638,167,590 - 38,214,062 (-)NCBImm8
Celera1638,657,356 - 38,703,953 (-)NCBICelera
Cytogenetic Map16B3NCBI
JBrowse: View Region in Genome Browser (JBrowse)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-alpha-tocopherol  (ISO)
(+)-artemisinin  (ISO)
(+)-catechin  (ISO)
(+)-schisandrin B  (EXP,ISO)
(+)-trans-(S)-allethrin  (ISO)
(-)-secoisolariciresinol  (ISO)
(3-phenoxyphenyl)methanol  (EXP,ISO)
(E,E)-germacrone  (EXP,ISO)
(S)-naringenin  (ISO)
(Z)-ligustilide  (ISO)
1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane  (ISO)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (EXP,ISO)
1,1-dichloroethene  (EXP)
1,2-dichloroethane  (EXP)
1-(3-chlorophenyl)piperazine  (ISO)
1-\{2-[(4-chlorobenzyl)sulfanyl]-2-(2,4-dichlorophenyl)ethyl\}-1H-imidazole  (ISO)
1-Hydroxypyrene  (EXP,ISO)
1-naphthol  (ISO)
1-naphthyl isothiocyanate  (EXP,ISO)
10H-phenothiazine  (EXP,ISO)
13-cis-retinal  (ISO)
17alpha-ethynylestradiol  (ISO)
17alpha-hydroxyprogesterone  (EXP,ISO)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
1H-indole  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP,ISO)
2,2',4,4'-tetrachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,2'-Bisphenol F  (EXP,ISO)
2,2-diphenylacetic acid 2-(diethylamino)ethyl ester  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,3',4,4',5,5'-Heptachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,5-trichlorophenol  (ISO)
2,4,6-trinitrobenzenesulfonic acid  (EXP,ISO)
2,4-D  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2,4-Dihydroxybenzophenone  (ISO)
2,5-di-tert-butylbenzene-1,4-diol  (ISO)
2,8-bis-Trifluoromethyl-4-quinoline carboxylic acid  (ISO)
2-(1-naphthalenylmethyl)-3-(2-oxolanyl)propanoic acid 2-(diethylamino)ethyl ester  (ISO)
2-(3,4-dimethoxyphenyl)-5-\{[2-(3,4-dimethoxyphenyl)ethyl](methyl)amino\}-2-(propan-2-yl)pentanenitrile  (ISO)
2-acetamidofluorene  (EXP,ISO)
2-butan-2-yl-4-[4-[4-[4-[[2-(2,4-dichlorophenyl)-2-(1,2,4-triazol-1-ylmethyl)-1,3-dioxolan-4-yl]methoxy]phenyl]-1-piperazinyl]phenyl]-1,2,4-triazol-3-one  (ISO)
2-methyl-1H-indole  (ISO)
2-tert-butylhydroquinone  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3,3',4,4'-tetrachlorobiphenyl  (EXP)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,3',5,5'-tetraiodothyroacetic acid  (ISO)
3,3',5-triiodo-L-thyronine  (EXP,ISO)
3,3'-diindolylmethane  (ISO)
3,3'-Dimethylbenzidine  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3,5-xylenol  (ISO)
3-iodoprop-2-yn-1-yl butylcarbamate  (EXP,ISO)
3-oxo-5beta-cholanic acid  (ISO)
4'-epidoxorubicin  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-(5,6,7,8-tetrahydroimidazo[1,5-a]pyridin-5-yl)benzonitrile  (ISO)
4-chloro-3,5-dimethylphenol  (EXP,ISO)
4-hydroxyphenyl retinamide  (ISO)
4-Methyl-3-penten-2-one, 9CI  (ISO)
4-nonylphenol  (ISO)
4-octylphenol  (ISO)
4-tert-butylphenol  (EXP,ISO)
4-tert-Octylphenol  (ISO)
5,7-dihydroxy-4'-methoxyflavone  (ISO)
5-aza-2'-deoxycytidine  (ISO)
5-iodo-2'-deoxyuridine  (ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (ISO)
5alpha-pregnane-3,20-dione  (EXP,ISO)
6-(4-chlorophenyl)imidazo[2,1-b][1,3]thiazole-5-carbaldehyde O-(3,4-dichlorobenzyl)oxime  (ISO)
6-propyl-2-thiouracil  (ISO)
7,12-dimethyltetraphene  (EXP,ISO)
8-(4-chlorophenylthio)-cAMP  (EXP)
8-Br-cAMP  (ISO)
9-cis-retinal  (ISO)
9-cis-retinoic acid  (ISO)
9-phenanthrol  (EXP,ISO)
acetamide  (ISO)
acetochlor  (EXP,ISO)
Acetyl tributyl citrate  (EXP,ISO)
actinomycin D  (ISO)
adenine arabinoside  (ISO)
afimoxifene  (EXP,ISO)
aflatoxin B1  (ISO)
aflatoxin B2  (ISO)
Aflatoxin G1  (ISO)
aflatoxin M1  (ISO)
alachlor  (EXP,ISO)
aldehydo-D-glucose  (ISO)
aldrin  (ISO)
all-trans-retinoic acid  (ISO)
allethrin  (ISO)
allyl isothiocyanate  (ISO)
alpha-hexachlorocyclohexane  (EXP,ISO)
alpha-santonin  (ISO)
alpha-tocotrienol  (ISO)
aminoglutethimide  (ISO)
amiodarone  (EXP)
ammonium chloride  (ISO)
amphetamine  (ISO)
amprenavir  (ISO)
androst-4-ene-3,17-dione  (EXP,ISO)
androstane  (ISO)
Anilofos  (EXP,ISO)
apazone  (ISO)
apigenin  (EXP,ISO)
arsenite(3-)  (ISO)
atazanavir sulfate  (ISO)
atorvastatin calcium  (EXP,ISO)
azinphos-methyl  (ISO)
azoxystrobin  (EXP,ISO)
beclomethasone  (ISO)
Benfuresate  (ISO)
benidipine  (ISO)
bensulfuron-methyl  (ISO)
Bensulide  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
Benzo[a]pyrene-7,8-diol  (ISO)
benzo[c]phenanthrene  (ISO)
benzophenone  (ISO)
Benzyl parahydroxybenzoate  (ISO)
berberine  (ISO)
bergomottin  (ISO)
Besigomsin  (ISO)
beta-carotene  (ISO)
beta-hexachlorocyclohexane  (ISO)
beta-naphthoflavone  (ISO)
beta-tocotrienol  (ISO)
bezafibrate  (ISO)
bicalutamide  (EXP,ISO)
bifenthrin  (EXP,ISO)
bilirubin IXalpha  (EXP,ISO)
biochanin A  (EXP,ISO)
bioresmethrin  (ISO)
biphenyl-2-ol  (ISO)
biphenyl-4-ol  (ISO)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
Bisphenol A diglycidyl ether  (ISO)
bisphenol A dimethacrylate  (ISO)
Bisphenol B  (ISO)
bitertanol  (EXP,ISO)
brefeldin A  (ISO)
Bromadiolone  (EXP,ISO)
bromocresol purple  (ISO)
Bromophos-ethyl  (EXP,ISO)
bromothymol blue  (ISO)
Bromperidol  (ISO)
bromuconazole  (EXP,ISO)
budesonide  (ISO)
bupirimate  (ISO)
buspirone  (ISO)
buta-1,3-diene  (EXP)
butafenacil  (ISO)
Butamifos  (EXP,ISO)
butein  (ISO)
butoconazole  (ISO)
butylated hydroxyanisole  (EXP)
Butylbenzyl phthalate  (EXP,ISO)
Butylparaben  (ISO)
cafenstrole  (EXP)
calcitriol  (ISO)
camptothecin  (ISO)
captan  (ISO)
carbamazepine  (ISO)
carbamazepine-10,11-epoxide  (ISO)
carbaryl  (ISO)
carbon nanotube  (EXP)
cerivastatin  (ISO)
cetylpyridinium  (ISO)
chenodeoxycholic acid  (ISO)
CHIR 99021  (ISO)
Chlomethoxyfen  (EXP,ISO)
chlordecone  (ISO)
chlorfenvinfos  (ISO)
chlornitrofen  (EXP,ISO)
Chlorobenzilate  (EXP,ISO)
Chloromethyl methyl ether  (EXP,ISO)
chloropropylate  (EXP,ISO)
chlorothalonil  (ISO)
chlorpromazine  (ISO)
chlorpropham  (ISO)
chlorpyrifos  (EXP,ISO)
chlorpyrifos-methyl  (EXP,ISO)
cholesterol  (EXP)
cholic acid  (EXP,ISO)
choline  (EXP)
chrysin  (EXP,ISO)
ciguatoxin CTX1B  (EXP)
cimetidine  (ISO)
cinchocaine  (ISO)
cisplatin  (ISO)
clemizole  (ISO)
clobetasol  (ISO)
clofibrate  (EXP,ISO)
clomiphene  (EXP,ISO)
clonazepam  (ISO)
clorgyline  (ISO)
clotrimazole  (EXP,ISO)
clozapine  (ISO)
cobicistat  (ISO)
colforsin daropate hydrochloride  (ISO)
copper(II) sulfate  (ISO)
corticosterone  (ISO)
coumaphos  (EXP,ISO)
coumestrol  (ISO)
Cryptotanshinone  (ISO)
curcumin  (ISO)
Cyanofenphos  (EXP,ISO)
cyclophosphamide  (ISO)
cyclosporin A  (EXP,ISO)
cyfluthrin  (EXP,ISO)
cyhalothrin  (EXP,ISO)
cypermethrin  (EXP,ISO)
cyproconazole  (ISO)
cyprodinil  (ISO)
cyproterone acetate  (EXP,ISO)
D-glucose  (ISO)
daidzein  (EXP,ISO)
decabromodiphenyl ether  (EXP,ISO)
dehydroepiandrosterone  (EXP,ISO)
delta-hexachlorocyclohexane  (ISO)
delta-tocotrienol  (ISO)
deoxycholic acid  (EXP,ISO)
Deoxyschizandrin  (EXP,ISO)
dexamethasone  (EXP,ISO)
dextran sulfate  (EXP)
diazepam  (ISO)
diazinon  (ISO)
dibenzo[a,l]pyrene  (ISO)
dibutyl phthalate  (EXP,ISO)
Dichlofenthion  (EXP,ISO)
diclofenac  (ISO)
dicloxacillin  (ISO)
dicofol  (EXP,ISO)
dieldrin  (EXP,ISO)
diethyl phthalate  (ISO)
diethylstilbestrol  (ISO)
difenoconazole  (ISO)
diflubenzuron  (ISO)
dihydroergotamine  (ISO)
diisobutyl phthalate  (ISO)
Diisodecyl phthalate  (EXP,ISO)
diisononyl phthalate  (ISO)
dilazep  (ISO)
dimethomorph  (EXP,ISO)
dimethylarsinous acid  (ISO)
diniconazole  (EXP,ISO)
diosgenin  (EXP)
dioxygen  (ISO)
dipentyl phthalate  (EXP,ISO)
Diphenolic acid  (EXP,ISO)
diphenylamine  (ISO)
disopyramide  (ISO)
disulfiram  (EXP,ISO)
disulfoton  (EXP)
Dithiopyr  (EXP,ISO)
diuron  (EXP,ISO)
doxorubicin  (ISO)
econazole  (ISO)
efavirenz  (ISO)
endosulfan  (EXP,ISO)
endrin  (EXP,ISO)
enilconazole  (EXP,ISO)
Enterolactone  (ISO)
equilin  (EXP,ISO)
erlotinib hydrochloride  (ISO)
estriol  (ISO)
estrone  (ISO)
Ethalfluralin  (EXP,ISO)
ethanol  (EXP)
ethion  (EXP,ISO)
ethoprophos  (EXP)
ethotoin  (ISO)
ethoxyquin  (EXP,ISO)
ethylparaben  (ISO)
etidronic acid  (ISO)
etofenprox  (EXP,ISO)
etoposide  (ISO)
eugenol  (ISO)
felodipine  (ISO)
fenamiphos  (EXP,ISO)
fenarimol  (EXP,ISO)
fenbuconazole  (ISO)
fenhexamid  (ISO)
fenitrothion  (EXP,ISO)
fenofibrate  (ISO)
fenthion  (EXP,ISO)
fentin chloride  (EXP,ISO)
fenvalerate  (EXP,ISO)
Fexofenadine hydrochloride  (ISO)
finasteride  (EXP,ISO)
fipronil  (EXP,ISO)
fisetin  (ISO)
flavonol  (EXP,ISO)
fluconazole  (ISO)
flucythrinate  (EXP,ISO)
fludioxonil  (EXP,ISO)
flufenacet  (ISO)
Flumetralin  (EXP,ISO)
flunisolide  (ISO)
fluoranthene  (EXP,ISO)
flutamide  (EXP,ISO)
fluticasone  (ISO)
flutolanil  (EXP,ISO)
fluvalinate  (EXP,ISO)
fluvastatin  (ISO)
folic acid  (EXP)
folpet  (EXP)
fulvestrant  (ISO)
galangin  (EXP,ISO)
gamma-hexachlorocyclohexane  (ISO)
genistein  (EXP,ISO)
Ginkgolide A  (EXP,ISO)
ginkgolide B  (ISO)
glimepiride  (ISO)
glucose  (ISO)
glycochenodeoxycholic acid  (ISO)
glycocholic acid  (ISO)
glycodeoxycholic acid  (ISO)
glycyrrhizinic acid  (ISO)
guggulsterone  (EXP,ISO)
GW 4064  (EXP)
heptachlor  (EXP,ISO)
Heptachlor epoxide  (EXP,ISO)
hesperetin  (ISO)
hexestrol  (ISO)
hycanthone  (ISO)
Hydrastine  (ISO)
hydroxyflutamide  (ISO)
hydroxyitraconazole  (ISO)
hyperforin  (ISO)
ifosfamide  (ISO)
imazamox  (ISO)
imipenem hydrate  (ISO)
Indanofan  (EXP,ISO)
indole-3-acetamide  (ISO)
indoprofen  (ISO)
iprobenfos  (EXP,ISO)
iprodione  (EXP,ISO)
Isoetharine  (ISO)
isofenphos  (EXP,ISO)
isoliquiritigenin  (ISO)
isopimpinellin  (EXP,ISO)
isoprothiolane  (EXP,ISO)
isoproturon  (ISO)
isorhamnetin  (EXP,ISO)
isotretinoin  (ISO)
isoxaben  (ISO)
isoxazoles  (ISO)
Isradipine  (ISO)
itraconazole  (ISO)
kaempferol  (EXP,ISO)
ketoconazole  (EXP,ISO)
kojic acid  (ISO)
L-methionine  (EXP)
lansoprazole  (ISO)
leflunomide  (ISO)
leptophos  (EXP,ISO)
levonorgestrel  (EXP,ISO)
lidocaine  (ISO)
lignan  (ISO)
linuron  (EXP,ISO)
lipopolysaccharide  (EXP)
lithocholic acid  (EXP,ISO)
loperamide  (ISO)
lovastatin  (ISO)
Maleic hydrazide  (ISO)
MC-4379  (EXP,ISO)
mecarbam  (EXP,ISO)
Medazepam  (ISO)
medroxyprogesterone acetate  (ISO)
mefenacet  (EXP,ISO)
mefenamic acid  (ISO)
megestrol  (ISO)
melatonin  (EXP)
Melengestrol acetate  (EXP,ISO)
menaquinone  (ISO)
menatetrenone  (ISO)
mephenytoin  (ISO)
mephobarbital  (ISO)
mercury dichloride  (ISO)
mestranol  (EXP,ISO)
metconazole  (EXP,ISO)
metformin  (EXP,ISO)
methacholine chloride  (EXP)
methapyrilene  (ISO)
methidathion  (ISO)
methiocarb  (ISO)
methotrexate  (ISO)
methoxsalen  (ISO)
methoxychlor  (EXP,ISO)
methyltestosterone  (ISO)
metolachlor  (EXP,ISO)
metolazone  (ISO)
metyrapone  (EXP,ISO)
mevastatin  (ISO)
miconazole  (ISO)
midazolam  (ISO)
mifepristone  (EXP,ISO)
Mitotane  (EXP,ISO)
mono(2-ethylhexyl) phthalate  (EXP,ISO)
monobenzone  (ISO)
monobenzyl phthalate  (ISO)
Monobutylphthalate  (ISO)
monocrotaline  (ISO)
monocrotophos  (ISO)
mycophenolic acid  (ISO)
N-nitrosodiethylamine  (ISO)
nabumetone  (ISO)
nafcillin  (ISO)
napropamide  (EXP,ISO)
nefazodone  (ISO)
nelfinavir  (ISO)
Nicardipine  (ISO)
nifedipine  (ISO)
nilutamide  (EXP,ISO)
nimodipine  (ISO)
nitrofen  (EXP,ISO)
Nonylphenol  (EXP,ISO)
norethisterone  (EXP,ISO)
norgestrel  (ISO)
notoginsenoside R1  (EXP,ISO)
ochratoxin A  (ISO)
octamethylcyclotetrasiloxane  (ISO)
okadaic acid  (ISO)
omeprazole  (ISO)
orlistat  (ISO)
oryzalin  (EXP,ISO)
Oxadiazon  (EXP,ISO)
oxiconazole  (ISO)
oxolane  (EXP)
oxybenzone  (EXP,ISO)
oxybuprocaine  (ISO)
oxycodone  (ISO)
Oxyfluorfen  (EXP,ISO)
p-menthan-3-ol  (EXP)
p-tert-Amylphenol  (ISO)
paclitaxel  (EXP,ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP,ISO)
parathion  (EXP,ISO)
parathion-methyl  (EXP,ISO)
parthenolide  (ISO)
pazopanib  (ISO)
PCB138  (ISO)
penconazole  (ISO)
pencycuron  (ISO)
pendimethalin  (EXP,ISO)
pentachloronitrobenzene  (ISO)
pentachlorophenol  (EXP)
pentobarbital  (ISO)
perfluorobutyric acid  (ISO)
perfluorodecanoic acid  (ISO)
perfluorododecanoic acid  (ISO)
perfluoroheptanoic acid  (ISO)
perfluorohexanesulfonic acid  (EXP)
perfluorohexanoic acid  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
perfluorooctanoic acid  (EXP,ISO)
permethrin  (EXP,ISO)
phenanthrene  (EXP,ISO)
phenobarbital  (EXP,ISO)
phenolphthalein  (ISO)
phenothrin  (ISO)
Phenoxybenzamine  (ISO)
phenthoate  (EXP,ISO)
phenylephrine  (EXP)
phenytoin  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
phosalone  (EXP,ISO)
phoxim  (EXP,ISO)
phthalic acid  (ISO)
picoxystrobin  (ISO)
pimecrolimus  (ISO)
pioglitazone  (ISO)
piperine  (ISO)
piperonyl butoxide  (EXP)
Piperophos  (EXP,ISO)
pirimiphos-methyl  (EXP)
pirinixic acid  (EXP)
PK-11195  (ISO)
prallethrin  (EXP,ISO)
pregnenolone  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP,ISO)
Pretilachlor  (EXP,ISO)
procaine  (ISO)
prochloraz  (EXP,ISO)
procymidone  (EXP,ISO)
progesterone  (ISO)
prometryn  (ISO)
propanil  (EXP,ISO)
propaphos  (EXP,ISO)
propargite  (EXP,ISO)
propiconazole  (EXP,ISO)
propranolol  (ISO)
propylparaben  (ISO)
propyzamide  (EXP,ISO)
prothiofos  (EXP,ISO)
pterostilbene  (ISO)
pyrene  (EXP,ISO)
pyrethrins  (EXP,ISO)
pyridaben  (EXP,ISO)
pyridaphenthion  (EXP,ISO)
pyrimethanil  (ISO)
quercetin  (EXP,ISO)
quinalphos  (EXP,ISO)
quinoxyfen  (ISO)
reserpine  (ISO)
resveratrol  (ISO)
rifampicin  (EXP,ISO)
rifaximin  (EXP,ISO)
Riluzole  (ISO)
risperidone  (ISO)
ritonavir  (ISO)
saquinavir  (ISO)
secobarbital  (ISO)
sevoflurane  (ISO)
silibinin  (ISO)
simvastatin  (ISO)
skatole  (ISO)
sodium arsenite  (EXP,ISO)
spironolactone  (EXP,ISO)
steviol  (ISO)
stilbene oxide  (ISO)
sulconazole  (ISO)
sulfamethazine  (ISO)
sulfinpyrazone  (ISO)
sulforaphane  (ISO)
sulfoxaflor  (EXP)
tamarixetin  (EXP,ISO)
tamoxifen  (EXP,ISO)
Tanshinone I  (ISO)
taurocholic acid  (EXP,ISO)
tebuconazole  (EXP,ISO)
terbufos  (EXP,ISO)
terbutryn  (ISO)
terbutylazine  (ISO)
testosterone  (EXP,ISO)
Testosterone propionate  (EXP,ISO)
Tetrachlorobisphenol A  (ISO)
tetrachloromethane  (EXP,ISO)
tetrachlorvinphos  (EXP,ISO)
tetramethrin  (ISO)
thalidomide  (ISO)
thapsigargin  (ISO)
thiabendazole  (ISO)
Thiazopyr  (ISO)
thioacetamide  (ISO)
Thiobencarb  (EXP,ISO)
thyroxine  (ISO)
tiaprofenic acid  (ISO)
tiracizine  (ISO)
titanium dioxide  (EXP)
tolclofos-methyl  (ISO)
tolylfluanid  (ISO)
topiramate  (ISO)
toxaphene  (EXP,ISO)
tralomethrin  (EXP,ISO)
TRAM-34  (ISO)
trans-cinnamic acid  (ISO)
Trenbolone  (ISO)
triadimefon  (EXP,ISO)
tributyl phosphate  (EXP,ISO)
tributylstannane  (EXP,ISO)
trichostatin A  (ISO)
triclosan  (EXP,ISO)
triflumizole  (EXP,ISO)
trifluralin  (EXP,ISO)
trifluridine  (ISO)
triforine  (EXP,ISO)
trimethobenzamide  (ISO)
triphenyl phosphate  (EXP,ISO)
Triphenylethylene  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
triticonazole  (EXP,ISO)
troglitazone  (EXP,ISO)
troleandomycin  (ISO)
tryptamine  (ISO)
tryptophol  (ISO)
uranium atom  (ISO)
urethane  (ISO)
ursodeoxycholic acid  (EXP,ISO)
valproic acid  (ISO)
verapamil  (ISO)
vincaleukoblastine  (ISO)
vinclozolin  (EXP,ISO)
vincristine  (ISO)
vitamin D  (ISO)
vitamin E  (ISO)
voriconazole  (EXP)
warfarin  (ISO)
zearalenone  (ISO)


Additional References at PubMed
PMID:9489701   PMID:9727070   PMID:9770465   PMID:9784494   PMID:10349636   PMID:10628745   PMID:10935643   PMID:11002334   PMID:11005856   PMID:11042159   PMID:11076861   PMID:11248085  
PMID:11248086   PMID:11336976   PMID:11386755   PMID:11602523   PMID:11891224   PMID:11893771   PMID:12054576   PMID:12370413   PMID:12447992   PMID:12477932   PMID:12569201   PMID:12606758  
PMID:12644700   PMID:12774017   PMID:12837957   PMID:12881517   PMID:12923173   PMID:14742670   PMID:15183191   PMID:15340055   PMID:15347657   PMID:15358766   PMID:15364542   PMID:15456840  
PMID:15456926   PMID:15611112   PMID:15619241   PMID:15671183   PMID:15684063   PMID:15710363   PMID:15726644   PMID:16123326   PMID:16141072   PMID:16141073   PMID:16195250   PMID:16219912  
PMID:16297466   PMID:16498401   PMID:16556603   PMID:16606610   PMID:16614213   PMID:16682417   PMID:16691293   PMID:16825189   PMID:16837625   PMID:16841097   PMID:16844773   PMID:16912278  
PMID:16971476   PMID:16973756   PMID:17093002   PMID:17159084   PMID:17170021   PMID:17267396   PMID:17521389   PMID:17936928   PMID:18167061   PMID:18187584   PMID:18242221   PMID:18287559  
PMID:18648086   PMID:18677425   PMID:18703564   PMID:18778245   PMID:18794335   PMID:19141612   PMID:19141872   PMID:19144646   PMID:19162173   PMID:19183106   PMID:19297428   PMID:19407337  
PMID:19436068   PMID:19460945   PMID:19489075   PMID:19542321   PMID:19797606   PMID:19815629   PMID:19898264   PMID:19997066   PMID:20059953   PMID:20060928   PMID:20173028   PMID:20185760  
PMID:20211142   PMID:20354104   PMID:20403969   PMID:20416375   PMID:20693526   PMID:20876238   PMID:20932939   PMID:20979450   PMID:21127142   PMID:21203578   PMID:21267068   PMID:21354151  
PMID:21376070   PMID:21436254   PMID:21628639   PMID:21677750   PMID:21685500   PMID:21747170   PMID:21826054   PMID:21873635   PMID:21920351   PMID:21933665   PMID:22166712   PMID:22285937  
PMID:22371261   PMID:22467028   PMID:22496360   PMID:22496397   PMID:22503787   PMID:22698814   PMID:22790967   PMID:22815676   PMID:22917771   PMID:23091169   PMID:23153560   PMID:23160821  
PMID:23291432   PMID:23349477   PMID:23475203   PMID:23626729   PMID:23878263   PMID:24362030   PMID:24486481   PMID:24690595   PMID:24755147   PMID:24863967   PMID:24952961   PMID:25065623  
PMID:25749104   PMID:25811240   PMID:26013842   PMID:26159875   PMID:26363009   PMID:26416771   PMID:26574435   PMID:26612838   PMID:26883953   PMID:27113289   PMID:27482056   PMID:27531557  
PMID:27550658   PMID:28237809   PMID:28534176   PMID:28743453   PMID:28751364   PMID:28756207   PMID:29107825   PMID:29123032   PMID:29142166   PMID:29212764   PMID:29360809   PMID:29425287  
PMID:29718219   PMID:30102401   PMID:30193838   PMID:30573465   PMID:30593543   PMID:30910785   PMID:31211619   PMID:31374856   PMID:31875848   PMID:31907988   PMID:32205367   PMID:32352317  
PMID:32798464   PMID:33076328   PMID:33777316   PMID:33879258  


Comparative Map Data
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
GRCm391638,068,711 - 38,115,211 (-)NCBIGRCm39mm39
GRCm39 Ensembl1638,068,685 - 38,115,186 (-)Ensembl
GRCm381638,248,349 - 38,294,849 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1638,248,323 - 38,294,824 (-)EnsemblGRCm38mm10GRCm38
MGSCv371638,248,435 - 38,294,910 (-)NCBIGRCm37mm9NCBIm37
MGSCv361638,167,590 - 38,214,062 (-)NCBImm8
Celera1638,657,356 - 38,703,953 (-)NCBICelera
Cytogenetic Map16B3NCBI
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
GRCh38.p13 Ensembl3119,780,484 - 119,818,487 (+)EnsemblGRCh38hg38GRCh38
GRCh383119,782,101 - 119,818,487 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh373119,500,948 - 119,537,334 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363120,982,021 - 121,020,022 (+)NCBINCBI36hg18NCBI36
Build 343120,982,020 - 121,020,021NCBI
Celera3117,908,432 - 117,946,438 (+)NCBI
Cytogenetic Map3q13.33NCBI
HuRef3116,874,950 - 116,913,074 (+)NCBIHuRef
CHM1_13119,462,845 - 119,500,855 (+)NCBICHM1_1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
mRatBN7.21162,460,213 - 62,496,665 (+)NCBImRatBN7.2
Rnor_6.0 Ensembl1165,022,100 - 65,058,545 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01165,022,100 - 65,058,546 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01167,024,185 - 67,060,494 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41164,239,918 - 64,276,702 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11164,297,534 - 64,333,716 (+)NCBI
Celera1161,960,674 - 61,997,009 (+)NCBICelera
Cytogenetic Map11q21NCBI
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
ChiLan1.0 EnsemblNW_00495542719,459,936 - 19,487,276 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542719,459,936 - 19,487,276 (+)NCBIChiLan1.0ChiLan1.0
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
PanPan1.13123,815,135 - 123,853,129 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3123,815,135 - 123,853,129 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v03116,901,579 - 116,940,366 (+)NCBIMhudiblu_PPA_v0panPan3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
CanFam3.13323,444,367 - 23,456,405 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3323,432,690 - 23,455,347 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3323,474,457 - 23,486,487 (+)NCBI
ROS_Cfam_1.03323,682,177 - 23,694,192 (+)NCBI
UMICH_Zoey_3.13323,486,165 - 23,498,350 (+)NCBI
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
HiC_Itri_2NW_024405602130,794,594 - 130,830,392 (-)NCBI
SpeTri2.0NW_0049365366,691,590 - 6,726,421 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
Sscrofa11.1 Ensembl13140,364,075 - 140,406,112 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113140,373,571 - 140,406,129 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213149,710,912 - 149,743,466 (-)NCBISscrofa10.2Sscrofa10.2susScr3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
ChlSab1.12261,005,404 - 61,043,016 (-)NCBI
ChlSab1.1 Ensembl2261,006,667 - 61,040,832 (-)Ensembl
Vero_WHO_p1.0NW_023666041105,267,620 - 105,304,705 (+)NCBI
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
HetGla 1.0NW_00462473128,371,707 - 28,405,327 (-)NCBI

Position Markers
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381638,249,070 - 38,249,160UniSTSGRCm38
MGSCv371638,249,156 - 38,249,246UniSTSGRCm37
Celera1638,658,065 - 38,658,155UniSTS
Cytogenetic Map16B3UniSTS

QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27095908Scvln7_msacral vertebrae length 2, 5 week (mouse)16350000040000000Mouse
27226768Tibl9_mtibia length 9, 5 week (mouse)16350000051600000Mouse
27226785Feml12_mfemur length 12, 5 week (mouse)16350000064800000Mouse
26884432Zlq7_mzygomatic length QTL 7, 10 week (mouse)16400000064800000Mouse
38501069Tip4_mtuberculosis immunophenotype 4, IFN-g level (mouse)16450000044700000Mouse
1301443Mopkd2_mmodifier of polycystic kidney disease progression 2 (mouse)Not determined16482756438827664Mouse
1300656Bgeq15_mbody growth early QTL 15 (mouse)Not determined16595650239956690Mouse
1301945Skl7_mskeletal size (tail length) 7 (mouse)Not determined16595650239956690Mouse
1300987Skull23_mskull morphology 23 (mouse)Not determined16595650239956690Mouse
1300943Skts9_mskin tumor susceptibility 9 (mouse)Not determined16595650239956690Mouse
1357763Lp1_mlymphocyte proliferation 1 (mouse)Not determined16672511565669666Mouse
11251724Ewc6_methanol withdrawal and consumption 6 (mouse)16840730242407302Mouse
26884376Skwq4_mskull length QTL 4, 5 week (mouse)16860000091100000Mouse
10043978Obq35_mobesity QTL 35 (mouse)Not determined161006288144062881Mouse
1301086Lprm5_mlymphoproliferation modifier 5 (mouse)Not determined161203007246030171Mouse
1301841Lrnx9_mlearning-contextual 9 (mouse)Not determined161240654246406653Mouse
10045614Rapop6_mradiation-induced apoptosis 6 (mouse)Not determined161498410348984214Mouse
4142236Pstc4_mperiosteal circumference 4 (mouse)Not determined161570409149704294Mouse
1357517Bwtn1_mbody weight at necropsy 1 (mouse)Not determined162020057985803938Mouse
1300534Bmd15_mbone mineral density 15 (mouse)Not determined162211802156118212Mouse
4141179Ipng3_mimprinted postnatal growth 3 (mouse)Not determined2295650257773713Mouse
1300915Lmr12_mleishmaniasis resistance 12 (mouse)Not determined162897245062972589Mouse
11059559Lmr12a_mleishmaniasis resistance 12a (mouse)162897245062972589Mouse
11059560Lmr12b_mleishmaniasis resistance 12b (mouse)162897245062972589Mouse
11049571Lmr12c_mleishmaniasis resistance 12c (mouse)162897245062972589Mouse
1301070Cypr1_mcytokine production 1 (mouse)Not determined163249243266492570Mouse
4142187Arrd3_mage-related retinal degeneration 3 (mouse)Not determined3270409165669666Mouse
1302096Aod1a_mautoimmune ovarian dysgenesis 1a (mouse)Not determined163562627392776120Mouse
10412263Gvhd6_mgraft-versus host disease 6 (mouse)Not determined163624048745690785Mouse
26884416Bzwq5_mbi-zygomatic width QTL 5, 5 week (mouse)163750000084900000Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:409
Count of miRNA genes:306
Interacting mature miRNAs:353
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (
For more information about miRGate, see PMID:25858286 or access the full paper here.



Nucleotide Sequences
RefSeq Transcripts NM_001098404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_010936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006521846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006521847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006521848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011245839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011245840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_384533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC154284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC154809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF031814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI595758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI746915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK011108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK018630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC120796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC137780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK383398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000023504   ⟹   ENSMUSP00000023504
RefSeq Status:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1638,248,323 - 38,294,824 (-)Ensembl
RefSeq Acc Id: NM_001098404   ⟹   NP_001091874
RefSeq Status: VALIDATED
Mouse AssemblyChrPosition (strand)Source
GRCm391638,068,711 - 38,115,186 (-)NCBI
GRCm381638,248,349 - 38,294,824 (-)NCBI
MGSCv371638,248,435 - 38,294,910 (-)RGD
Celera1638,657,356 - 38,703,953 (-)RGD
RefSeq Acc Id: NM_010936   ⟹   NP_035066
RefSeq Status: VALIDATED
Mouse AssemblyChrPosition (strand)Source
GRCm391638,068,711 - 38,115,186 (-)NCBI
GRCm381638,248,349 - 38,294,824 (-)NCBI
MGSCv371638,248,435 - 38,294,910 (-)RGD
Celera1638,657,356 - 38,703,953 (-)RGD
RefSeq Acc Id: XM_006521846   ⟹   XP_006521909
RefSeq Status:
Mouse AssemblyChrPosition (strand)Source
GRCm391638,069,372 - 38,115,203 (-)NCBI
GRCm381638,249,010 - 38,294,841 (-)NCBI
RefSeq Acc Id: XM_006521847   ⟹   XP_006521910
RefSeq Status:
Mouse AssemblyChrPosition (strand)Source
GRCm391638,071,497 - 38,115,201 (-)NCBI
GRCm381638,251,135 - 38,294,839 (-)NCBI
RefSeq Acc Id: XM_006521848   ⟹   XP_006521911
RefSeq Status:
Mouse AssemblyChrPosition (strand)Source
GRCm391638,069,372 - 38,115,211 (-)NCBI
GRCm381638,249,010 - 38,294,849 (-)NCBI