Itga1 (integrin alpha 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Itga1 (integrin alpha 1) Mus musculus
Analyze
Symbol: Itga1
Name: integrin alpha 1
RGD ID: 69007
MGI Page MGI
Description: Predicted to enable collagen binding activity involved in cell-matrix adhesion; integrin binding activity; and protein phosphatase binding activity. Involved in negative regulation of epidermal growth factor receptor signaling pathway. Acts upstream of or within cell adhesion; cellular extravasation; and neutrophil chemotaxis. Located in basal part of cell and external side of plasma membrane. Is expressed in blood vessel endothelium; embryo mesenchyme; intestine smooth muscle; and lung. Used to study type 1 diabetes mellitus. Orthologous to human ITGA1 (integrin subunit alpha 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: CD49; CD49 antigen-like family member A; CD49A; E130012M19Rik; integrin alpha-1; laminin and collagen receptor; V; VLA-1; Vla1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913115,094,615 - 115,238,500 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl13115,089,632 - 115,238,500 (-)EnsemblGRCm39 Ensembl
GRCm3813114,958,079 - 115,101,964 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13114,953,096 - 115,101,964 (-)EnsemblGRCm38mm10GRCm38
MGSCv3713115,748,287 - 115,892,172 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3613116,080,957 - 116,222,842 (-)NCBIMGSCv36mm8
Celera13119,308,615 - 119,462,806 (-)NCBICelera
Cytogenetic Map13D2.2NCBI
cM Map1364.61NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-pilocarpine  (ISO)
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3,4-dichloroaniline  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-Nitrobenzanthrone  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (EXP)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (ISO)
acrylamide  (ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (EXP,ISO)
Allylamine  (ISO)
aluminium oxide  (ISO)
amitrole  (ISO)
ammonium chloride  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[b]fluoranthene  (EXP)
berberine  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
cadmium dichloride  (ISO)
cannabidiol  (ISO)
carbon nanotube  (EXP)
chrysene  (EXP)
cisplatin  (ISO)
cobalt dichloride  (ISO)
colforsin daropate hydrochloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
corticosterone  (ISO)
crocidolite asbestos  (EXP)
dibutyl phthalate  (EXP)
dichlorine  (ISO)
dioxygen  (EXP)
disodium selenite  (ISO)
diuron  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
ethanol  (ISO)
folic acid  (EXP)
fulvestrant  (ISO)
geldanamycin  (ISO)
genistein  (EXP)
indometacin  (ISO)
ivermectin  (ISO)
leflunomide  (ISO)
medroxyprogesterone acetate  (ISO)
methamphetamine  (EXP)
methotrexate  (ISO)
Methylazoxymethanol acetate  (ISO)
oxaliplatin  (ISO)
ozone  (EXP,ISO)
paclitaxel  (ISO)
perfluorobutanesulfonic acid  (ISO)
perfluorodecanoic acid  (ISO)
perfluorododecanoic acid  (ISO)
perfluoroheptanoic acid  (ISO)
perfluorooctanesulfonamide  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (EXP,ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP)
pregnenolone 16alpha-carbonitrile  (ISO)
progesterone  (ISO)
resveratrol  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (EXP)
silver(0)  (EXP)
sodium arsenate  (EXP)
sodium arsenite  (ISO)
sulfadimethoxine  (ISO)
sunitinib  (ISO)
tetrachloromethane  (EXP,ISO)
tetraphene  (EXP)
titanium dioxide  (EXP)
toluene  (ISO)
topotecan  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
urethane  (EXP)
valproic acid  (ISO)
vinclozolin  (ISO)
vincristine  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)
zoledronic acid  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Integrin expression on normal and neoplastic human breast epithelium. Damjanovich L, etal., Acta Chir Hung. 1997;36(1-4):69-71.
2. Integrin signaling in inflammatory and neuropathic pain in the rat. Dina OA, etal., Eur J Neurosci. 2004 Feb;19(3):634-42.
3. Primary afferent second messenger cascades interact with specific integrin subunits in producing inflammatory hyperalgesia. Dina OA, etal., Pain. 2005 May;115(1-2):191-203.
4. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
5. MGDs mouse GO annotations MGD data from the GO Consortium
6. MGD IEA MGD IEA
7. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
8. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
9. Mouse MP Annotation Import Pipeline RGD automated import pipeline
10. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
12. Genetic deletion or antibody blockade of alpha1beta1 integrin induces a stable plaque phenotype in ApoE-/- mice. Schapira K, etal., Arterioscler Thromb Vasc Biol. 2005 Sep;25(9):1917-24. Epub 2005 Jun 23.
13. The integrins. Takada Y, etal., Genome Biol. 2007;8(5):215.
Additional References at PubMed
PMID:1427867   PMID:1431091   PMID:2165966   PMID:7560884   PMID:7691492   PMID:7719021   PMID:8179910   PMID:8306881   PMID:8626034   PMID:8828042   PMID:9004048   PMID:9119362  
PMID:9166585   PMID:9361014   PMID:9553049   PMID:9603370   PMID:9698453   PMID:9885280   PMID:10201888   PMID:10213866   PMID:10349636   PMID:10528208   PMID:10681423   PMID:10706142  
PMID:10727440   PMID:10805967   PMID:11042159   PMID:11073824   PMID:11076861   PMID:11217851   PMID:11447218   PMID:11470831   PMID:11546798   PMID:11767049   PMID:12000729   PMID:12477932  
PMID:12479823   PMID:12488427   PMID:12721290   PMID:12904471   PMID:12960301   PMID:14516674   PMID:14558093   PMID:14688336   PMID:14994542   PMID:15132990   PMID:15172686   PMID:15277235  
PMID:15366018   PMID:15368439   PMID:15592458   PMID:15739233   PMID:16106035   PMID:16141072   PMID:16141073   PMID:16198011   PMID:16623929   PMID:16683015   PMID:16754661   PMID:16775606  
PMID:16973387   PMID:17050674   PMID:17237400   PMID:17339338   PMID:17377534   PMID:17660399   PMID:17911590   PMID:18032737   PMID:18245559   PMID:18258846   PMID:18614805   PMID:18676835  
PMID:18775695   PMID:18804439   PMID:18832573   PMID:19686679   PMID:20091789   PMID:20200271   PMID:20368353   PMID:20864678   PMID:21372020   PMID:21873635   PMID:22198947   PMID:22297672  
PMID:22923640   PMID:23023225   PMID:23152823   PMID:23236390   PMID:23509351   PMID:23580202   PMID:23911822   PMID:24164540   PMID:24495803   PMID:24939421   PMID:24983314   PMID:25593319  
PMID:26209621   PMID:26367869   PMID:27412481   PMID:27542621   PMID:29108785   PMID:30319610   PMID:32112256   PMID:32325033   PMID:32439709   PMID:32562661   PMID:33584706   PMID:35245678  
PMID:36861436  


Genomics

Comparative Map Data
Itga1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913115,094,615 - 115,238,500 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl13115,089,632 - 115,238,500 (-)EnsemblGRCm39 Ensembl
GRCm3813114,958,079 - 115,101,964 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13114,953,096 - 115,101,964 (-)EnsemblGRCm38mm10GRCm38
MGSCv3713115,748,287 - 115,892,172 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3613116,080,957 - 116,222,842 (-)NCBIMGSCv36mm8
Celera13119,308,615 - 119,462,806 (-)NCBICelera
Cytogenetic Map13D2.2NCBI
cM Map1364.61NCBI
ITGA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38552,787,916 - 52,959,209 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl552,787,916 - 52,959,209 (+)EnsemblGRCh38hg38GRCh38
GRCh37552,083,750 - 52,255,039 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36552,119,893 - 52,285,242 (+)NCBINCBI36Build 36hg18NCBI36
Build 34552,119,892 - 52,285,241NCBI
Celera549,037,686 - 49,203,085 (+)NCBICelera
Cytogenetic Map5q11.2NCBI
HuRef549,055,982 - 49,221,542 (+)NCBIHuRef
CHM1_1552,086,786 - 52,252,111 (+)NCBICHM1_1
T2T-CHM13v2.0553,615,621 - 53,786,944 (+)NCBIT2T-CHM13v2.0
Itga1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8248,379,181 - 48,545,336 (-)NCBIGRCr8
mRatBN7.2246,646,125 - 46,812,237 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl246,653,193 - 46,812,238 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx253,760,440 - 53,912,547 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0251,818,812 - 51,971,755 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0246,688,983 - 46,841,874 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0247,127,403 - 47,281,387 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl247,127,219 - 47,281,421 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0271,666,601 - 71,823,120 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4247,107,849 - 47,206,261 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1247,036,084 - 47,134,488 (-)NCBI
Celera242,407,780 - 42,559,904 (-)NCBICelera
Cytogenetic Map2q14NCBI
Itga1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544614,446,300 - 14,577,605 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544614,439,571 - 14,582,236 (-)NCBIChiLan1.0ChiLan1.0
ITGA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2460,984,567 - 61,160,262 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1559,135,090 - 59,312,685 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0561,073,507 - 61,247,565 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1562,692,673 - 62,865,771 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl562,692,673 - 62,865,769 (-)Ensemblpanpan1.1panPan2
ITGA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1462,287,823 - 62,455,940 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl462,293,082 - 62,455,650 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha462,062,740 - 62,230,868 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0462,785,836 - 62,953,966 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl462,791,553 - 62,953,332 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1462,561,013 - 62,729,609 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0462,685,631 - 62,847,651 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0463,212,383 - 63,380,850 (-)NCBIUU_Cfam_GSD_1.0
Itga1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213205,502,947 - 205,654,957 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648014,443,685 - 14,591,380 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648014,442,481 - 14,591,574 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ITGA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1632,129,612 - 32,304,592 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11632,130,265 - 32,309,917 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21633,940,969 - 34,132,541 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ITGA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1449,081,687 - 49,248,321 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl449,082,787 - 49,246,186 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660821,876,808 - 2,052,640 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Itga1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247596,404,758 - 6,543,211 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247596,397,743 - 6,543,652 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Itga1
5862 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:678
Count of miRNA genes:408
Interacting mature miRNAs:492
Transcripts:ENSMUST00000061673
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558741Ses10_msalmonella enteritidis susceptibility 10 (mouse)Not determined1382739968116740106Mouse
4142465Pbwg17_mpostnatal body weight growth 17 (mouse)Not determined1383876060117876256Mouse
14700691Cisaq1_mcoxsackieviral infection serum ALT QTL 1 (mouse)1386148119120461536Mouse
4140995Fbtq6_mfemoral bone trait QTL 6 (mouse)Not determined1386341617120341758Mouse
1300939Hrtfm6_mheart failure modifier 6 (mouse)Not determined1391383692120883175Mouse
1300876Tanidd2_mtally ho associated non-insulin dependednt diabetes mellitus 2 (mouse)Not determined1391965303120883175Mouse
1301142Heal2_mwound healing/regeneration 2 (mouse)Not determined1393875267120883175Mouse
4142338Skmw18_mskeletal muscle weight 18 (mouse)Not determined1394528399120883175Mouse
1558763Gct9_mgranulosa cell tumorigenesis 9 (mouse)Not determined1395036824120883175Mouse
1357468Rplag_mreduced platelet aggregation (mouse)Not determined1395502130120883175Mouse
14746974Manh75_mmandible shape 75 (mouse)1399386647120883175Mouse
12879496Fexq2_mfear expression QTL 2 (mouse)13100741519120883175Mouse
4142400Tgq24_mtriglyceride QTL 24 (mouse)Not determined102602630120883175Mouse
4141826Tbqt5_mtibia bone quality traits 5 (mouse)Not determined13103341617117043216Mouse
4142334Svtms_msurvival time modifier of Sod2 (mouse)Not determined13107613580119476372Mouse
4141704Hipq1_mhyperinsulin production QTL 1 (mouse)Not determined110409487119476372Mouse

Markers in Region
RH124904  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3813115,088,459 - 115,088,658UniSTSGRCm38
MGSCv3713115,878,667 - 115,878,866UniSTSGRCm37
Celera13119,447,814 - 119,448,013UniSTS
Cytogenetic Map13D2.2UniSTS
PMC141158P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3813115,090,430 - 115,090,641UniSTSGRCm38
MGSCv3713115,880,638 - 115,880,849UniSTSGRCm37
Cytogenetic Map13D2.2UniSTS
AI852218  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3813115,088,564 - 115,088,687UniSTSGRCm38
MGSCv3713115,878,772 - 115,878,895UniSTSGRCm37
Celera13119,447,919 - 119,448,042UniSTS
Cytogenetic Map13D2.2UniSTS
Whitehead/MRC_RH13994.85UniSTS
Itga1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map13D2.2UniSTS
cM Map1365.0UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000061673   ⟹   ENSMUSP00000077132
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13115,089,632 - 115,238,500 (-)Ensembl
GRCm38.p6 Ensembl13114,953,096 - 115,101,964 (-)Ensembl
RefSeq Acc Id: ENSMUST00000224119
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13115,147,115 - 115,238,414 (-)Ensembl
GRCm38.p6 Ensembl13115,010,579 - 115,101,878 (-)Ensembl
RefSeq Acc Id: ENSMUST00000224268
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13115,144,233 - 115,238,467 (-)Ensembl
GRCm38.p6 Ensembl13115,007,697 - 115,101,931 (-)Ensembl
RefSeq Acc Id: ENSMUST00000224493
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13115,170,600 - 115,238,413 (-)Ensembl
GRCm38.p6 Ensembl13115,034,064 - 115,101,877 (-)Ensembl
RefSeq Acc Id: ENSMUST00000224541
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13115,183,507 - 115,238,246 (-)Ensembl
GRCm38.p6 Ensembl13115,046,971 - 115,101,710 (-)Ensembl
RefSeq Acc Id: ENSMUST00000224865
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13115,118,755 - 115,238,265 (-)Ensembl
GRCm38.p6 Ensembl13114,982,219 - 115,101,729 (-)Ensembl
RefSeq Acc Id: NM_001033228   ⟹   NP_001028400
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913115,094,615 - 115,238,500 (-)NCBI
GRCm3813114,958,079 - 115,101,964 (-)ENTREZGENE
MGSCv3713115,748,287 - 115,892,172 (-)RGD
Celera13119,308,615 - 119,462,806 (-)RGD
cM Map13 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_001028400 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH14765 (Get FASTA)   NCBI Sequence Viewer  
  BAC35370 (Get FASTA)   NCBI Sequence Viewer  
  BAE20498 (Get FASTA)   NCBI Sequence Viewer  
  BAE20643 (Get FASTA)   NCBI Sequence Viewer  
  BAE24585 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000077132
  ENSMUSP00000077132.7
GenBank Protein Q3V3R4 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001028400   ⟸   NM_001033228
- Peptide Label: precursor
- UniProtKB: F8VQN5 (UniProtKB/Swiss-Prot),   Q3V3R4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000077132   ⟸   ENSMUST00000061673
Protein Domains
VWFA

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3V3R4-F1-model_v2 AlphaFold Q3V3R4 1-1179 view protein structure

Promoters
RGD ID:8681360
Promoter ID:EPDNEW_M18711
Type:initiation region
Name:Itga1_1
Description:Mus musculus integrin alpha 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3813115,101,931 - 115,101,991EPDNEW
RGD ID:6824087
Promoter ID:MM_KWN:15330
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_4Hour,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000036276,   NM_001033228,   UC007RXY.1,   UC007RXZ.1,   UC007RYA.1,   UC007RYD.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3613115,891,866 - 115,892,366 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:96599 AgrOrtholog
Ensembl Genes ENSMUSG00000042284 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSG00000063330
Ensembl Transcript ENSMUST00000061673 ENTREZGENE
  ENSMUST00000061673.9 UniProtKB/Swiss-Prot
Gene3D-CATH 2.130.10.130 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.50.410 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Bicelle-embedded integrin alpha(iib) transmembrane segment UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Integrin domains. Chain A, domain 2 UniProtKB/Swiss-Prot
  ntegrin, alpha v. Chain A, domain 3 UniProtKB/Swiss-Prot
  ntegrin, alpha v. Chain A, domain 4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro FG-GAP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Int_alpha_beta-p UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Integrin_alpha UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Integrin_alpha-2 UniProtKB/Swiss-Prot
  Integrin_alpha_C_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Integrin_alpha_Ig-like_2 UniProtKB/Swiss-Prot
  Integrin_alpha_Ig-like_3 UniProtKB/Swiss-Prot
  Integrin_alpha_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Integrin_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWF_A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  vWFA_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:109700 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:96599 ENTREZGENE
NCBI Gene 109700 ENTREZGENE
PANTHER COLLAGEN ALPHA UniProtKB/TrEMBL
  INTEGRIN ALPHA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  INTEGRIN ALPHA-1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWFA DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam FG-GAP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Integrin_A_Ig_2 UniProtKB/Swiss-Prot
  Integrin_A_Ig_3 UniProtKB/Swiss-Prot
  Integrin_alpha2 UniProtKB/Swiss-Prot
  VWA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Itga1 PhenoGen
PRINTS INTEGRINA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWFADOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE FG_GAP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  INTEGRIN_ALPHA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWFA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART Int_alpha UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF53300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF69179 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF69318 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt F8VQN5 ENTREZGENE
  ITA1_MOUSE UniProtKB/Swiss-Prot
  Q05DI0_MOUSE UniProtKB/TrEMBL
  Q3URV2_MOUSE UniProtKB/TrEMBL
  Q3V391_MOUSE UniProtKB/TrEMBL
  Q3V3R4 ENTREZGENE
  Q8BPT3_MOUSE UniProtKB/TrEMBL
UniProt Secondary F8VQN5 UniProtKB/Swiss-Prot