Bcat2 (branched chain aminotransferase 2, mitochondrial) - Rat Genome Database

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Gene: Bcat2 (branched chain aminotransferase 2, mitochondrial) Mus musculus
Analyze
Symbol: Bcat2
Name: branched chain aminotransferase 2, mitochondrial
RGD ID: 69003
MGI Page MGI
Description: Enables branched-chain-amino-acid transaminase activity. Acts upstream of or within branched-chain amino acid metabolic process; cellular response to leukemia inhibitory factor; and regulation of hormone levels. Located in mitochondrion. Is expressed in several structures, including alimentary system; genitourinary system; nervous system; respiratory system; and sensory organ. Used to study maple syrup urine disease. Orthologous to human BCAT2 (branched chain amino acid transaminase 2); PARTICIPATES IN valine, leucine and isoleucine biosynthetic pathway; valine, leucine and isoleucine degradation pathway; pantothenic acid metabolic pathway; INTERACTS WITH 1,1-dichloroethene; 1,2-dimethylhydrazine; 4-hydroxyphenyl retinamide.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: BCAT(m); Bcat-; Bcat-2; branched-chain-amino-acid aminotransferase, mitochondrial; Eca4; Eca40
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39745,218,391 - 45,239,134 (+)NCBIGRCm39mm39
GRCm39 Ensembl745,219,577 - 45,239,135 (+)Ensembl
GRCm38745,568,967 - 45,589,710 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl745,570,153 - 45,589,711 (+)EnsemblGRCm38mm10GRCm38
MGSCv37752,825,733 - 52,845,078 (+)NCBIGRCm37mm9NCBIm37
MGSCv36745,438,405 - 45,457,750 (+)NCBImm8
Celera741,023,580 - 41,045,483 (+)NCBICelera
Cytogenetic Map7B3NCBI
cM Map729.36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:9090377   PMID:9657861   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12904583   PMID:14610273   PMID:14681479   PMID:15489334   PMID:15735755  
PMID:15782199   PMID:16141072   PMID:16141073   PMID:17767905   PMID:17967808   PMID:18614015   PMID:18799693   PMID:19268448   PMID:20093359   PMID:20133434   PMID:20237068   PMID:20439489  
PMID:20554928   PMID:21267068   PMID:21677750   PMID:21873635   PMID:21969404   PMID:23800641   PMID:24349566   PMID:24638054   PMID:26351290   PMID:27534441   PMID:28219950   PMID:32029896  


Genomics

Comparative Map Data
Bcat2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39745,218,391 - 45,239,134 (+)NCBIGRCm39mm39
GRCm39 Ensembl745,219,577 - 45,239,135 (+)Ensembl
GRCm38745,568,967 - 45,589,710 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl745,570,153 - 45,589,711 (+)EnsemblGRCm38mm10GRCm38
MGSCv37752,825,733 - 52,845,078 (+)NCBIGRCm37mm9NCBIm37
MGSCv36745,438,405 - 45,457,750 (+)NCBImm8
Celera741,023,580 - 41,045,483 (+)NCBICelera
Cytogenetic Map7B3NCBI
cM Map729.36NCBI
BCAT2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1948,795,062 - 48,811,029 (-)EnsemblGRCh38hg38GRCh38
GRCh381948,795,064 - 48,811,029 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371949,298,321 - 49,314,286 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361953,990,131 - 54,006,113 (-)NCBINCBI36hg18NCBI36
Build 341953,990,131 - 54,006,113NCBI
Celera1946,166,129 - 46,182,134 (-)NCBI
Cytogenetic Map19q13.33NCBI
HuRef1945,677,853 - 45,693,853 (-)NCBIHuRef
CHM1_11949,300,194 - 49,316,125 (-)NCBICHM1_1
Bcat2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2196,040,407 - 96,060,008 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl196,042,625 - 96,060,007 (+)Ensembl
Rnor_6.01101,553,900 - 101,572,103 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1101,554,642 - 101,572,080 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01102,633,422 - 102,650,883 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4196,038,287 - 96,055,622 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1196,116,397 - 96,133,732 (+)NCBI
Celera190,298,174 - 90,315,510 (+)NCBICelera
Cytogenetic Map1q22NCBI
Bcat2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555591,785,253 - 1,797,899 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555591,785,253 - 1,796,838 (+)NCBIChiLan1.0ChiLan1.0
BCAT2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11954,945,156 - 54,962,887 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1954,945,157 - 54,962,887 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01945,793,433 - 45,809,546 (-)NCBIMhudiblu_PPA_v0panPan3
BCAT2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11107,539,125 - 107,549,286 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1107,538,465 - 107,549,234 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1107,061,565 - 107,071,746 (+)NCBI
ROS_Cfam_1.01108,063,749 - 108,073,941 (+)NCBI
UMICH_Zoey_3.11107,730,663 - 107,740,841 (+)NCBI
UNSW_CanFamBas_1.01107,377,548 - 107,387,729 (+)NCBI
UU_Cfam_GSD_1.01108,213,156 - 108,223,338 (+)NCBI
Bcat2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934921,247,666 - 21,259,021 (-)NCBI
SpeTri2.0NW_0049366642,865,804 - 2,890,038 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BCAT2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl654,107,681 - 54,143,602 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1654,107,682 - 54,123,595 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2649,855,038 - 49,870,815 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BCAT2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1642,031,003 - 42,051,770 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl642,030,984 - 42,049,050 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607321,910,508 - 21,927,833 (-)NCBIVero_WHO_p1.0
Bcat2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248325,132,667 - 5,147,099 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
UniSTS:235663  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv37752,840,802 - 52,840,929UniSTSGRCm37
Celera741,041,191 - 41,041,318UniSTS
Celera741,039,776 - 41,039,903UniSTS
Cytogenetic Map7B4UniSTS
cM Map723.0UniSTS
PMC324540P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38745,575,241 - 45,575,709UniSTSGRCm38
MGSCv37752,830,611 - 52,831,079UniSTSGRCm37
Celera741,028,458 - 41,028,926UniSTS
Cytogenetic Map7B4UniSTS
cM Map723.0UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7346321287493512Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360000072900000Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76500000133900000Mouse
10449139Eosn1_meosinophil differential 1 (mouse)71278145246781452Mouse
10449158Eosn3_meosinophil differential 3 (mouse)71278145246781452Mouse
4141566Femwf8_mfemur work to failure 8 (mouse)Not determined1333306047333196Mouse
11522751Cocia17_mcocaine-induced activity, QTL 17 (mouse)71343577947435779Mouse
25314314Sccor1_msynaptonemal complex length to mean MLH1 count ratio 1 (mouse)71360000047700000Mouse
1559016Drsi_mDCC-related Spp1 induction (mouse)Not determined71690336849509583Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718994869119886157Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719413473142366067Mouse
1301622Eae12_msusceptibility to experimental allergic encephalomyelitis 12 (mouse)Not determined71958059053580679Mouse
1301052Bhr6_mbronchial hyperresponsiveness 6 (mouse)Not determined72014282554142942Mouse
12904742Litsq2_mlitter size QTL 2 (mouse)72302446357024609Mouse
1301709Bdt4_mbone density traits 4 (mouse)Not determined72323914857239292Mouse
11354952Pdcc1_mplasmacytoid dentritic cell compartment 1 (mouse)72341710757417107Mouse
1301969Lbw5_mlupus NZB x NZW 5 (mouse)Not determined72719819161202351Mouse
12790989Tgl6_mtriglyceride 6 (mouse)72789112561891125Mouse
4141805Sle19_msystematic lupus erythematosus susceptibility 19 (mouse)Not determined3033306081485905Mouse
26884404Huml1_mhumerus length 1, 5 week (mouse)730500000109400000Mouse
1301175Ap7q_malcohol preference 7 QTL (mouse)Not determined73206509766065329Mouse
1300996Aorls2_maortic lesion size 2 (mouse)Not determined73274478466744933Mouse
4141909W10q18_mweight 10 weeks QTL 18 (mouse)Not determined3379830258499217Mouse
4142218W6q17_mweight 6 weeks QTL 17 (mouse)Not determined3379830258499217Mouse
4142102Tailq5_mtail length QTL 5 (mouse)Not determined3379830258499217Mouse
4142003W3q10_mweight 3 weeks QTL 10 (mouse)Not determined3379830258499217Mouse
1357469Kidq5_mkidney weight QTL 5 (mouse)Not determined73379830258499217Mouse
1357731Lvrq6_mliver weight QTL 6 (mouse)Not determined73379830258499217Mouse
1357634Splq7_mspleen weight QTL 7 (mouse)Not determined73379830258499217Mouse
1357883Epfq5_mepididymal fat pad weight QTL 5 (mouse)Not determined73379830258499217Mouse
39128210Lwq19_mliver weight QTL 19 (mouse)73379830258499217Mouse
1559000Ossc1_mosteosarcoma susceptibility 1 (mouse)Not determined73440327768403475Mouse
38501071Stsl6_mSalmonella typhimurium susceptibility locus 6 (mouse)73450000051500000Mouse
10045622Heal20_mwound healing/regeneration 20 (mouse)Not determined73466713968667295Mouse
1357586Mdmsc3_mmodifier of muscularity 3 (mouse)Not determined73479812168798270Mouse
1301514Rigs1_mradiation induced gastroschisis 1 (mouse)Not determined73658059092745138Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736580590116817642Mouse
25314301Vmm3_mvariable multisystem mineralization 3, lung (mouse)73760000072400000Mouse
25314303Vmm4_mvariable multisystem mineralization 4, kidney (mouse)73760000087400000Mouse
1300878Skts1_mskin tumor susceptibility 1 (mouse)Not determined73824163872241834Mouse
10402488Dipa2_mdrug induced psychomotor activation 2 (mouse)Not determined73877180072771936Mouse
1300791Abbp3_mA/J and C57BL/6 blood pressure 3 (mouse)Not determined740024463103860803Mouse
4141929Chlq18_mcirculating hormone level QTL 18 (mouse)Not determined74149907275499217Mouse
11252140Fdr1_mfat response to dietary restriction 1 (mouse)74149907275499217Mouse
10043926Bw1n_mbody weight 1 in NSY (mouse)Not determined745512542119094307Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1909
Count of miRNA genes:526
Interacting mature miRNAs:628
Transcripts:ENSMUST00000033098, ENSMUST00000117366, ENSMUST00000120296, ENSMUST00000120864, ENSMUST00000140077, ENSMUST00000148275, ENSMUST00000153219
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001243052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_009737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017321953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017321954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003946378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC151602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF031467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI327099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK008981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK037482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK145300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK192808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB630667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC017688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC048072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY279029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HC896796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U68526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000033098   ⟹   ENSMUSP00000033098
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl745,219,577 - 45,239,135 (+)Ensembl
GRCm38.p6 Ensembl745,570,153 - 45,589,711 (+)Ensembl
RefSeq Acc Id: ENSMUST00000120864   ⟹   ENSMUSP00000113045
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl745,219,797 - 45,239,134 (+)Ensembl
GRCm38.p6 Ensembl745,570,373 - 45,589,710 (+)Ensembl
RefSeq Acc Id: ENSMUST00000209204   ⟹   ENSMUSP00000148152
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl745,220,420 - 45,239,134 (+)Ensembl
GRCm38.p6 Ensembl745,570,996 - 45,589,710 (+)Ensembl
RefSeq Acc Id: ENSMUST00000209410   ⟹   ENSMUSP00000147303
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl745,234,845 - 45,239,130 (+)Ensembl
GRCm38.p6 Ensembl745,585,421 - 45,589,706 (+)Ensembl
RefSeq Acc Id: ENSMUST00000209543
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl745,224,646 - 45,234,567 (+)Ensembl
GRCm38.p6 Ensembl745,575,222 - 45,585,143 (+)Ensembl
RefSeq Acc Id: ENSMUST00000209569
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl745,219,774 - 45,236,182 (+)Ensembl
GRCm38.p6 Ensembl745,570,350 - 45,586,758 (+)Ensembl
RefSeq Acc Id: ENSMUST00000210811   ⟹   ENSMUSP00000148059
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl745,224,524 - 45,234,448 (+)Ensembl
GRCm38.p6 Ensembl745,575,100 - 45,585,024 (+)Ensembl
RefSeq Acc Id: ENSMUST00000211173   ⟹   ENSMUSP00000147628
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl745,222,293 - 45,239,134 (+)Ensembl
GRCm38.p6 Ensembl745,572,869 - 45,589,710 (+)Ensembl
RefSeq Acc Id: NM_001243052   ⟹   NP_001229981
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39745,220,703 - 45,239,134 (+)NCBI
GRCm38745,571,279 - 45,589,710 (+)NCBI
Celera741,023,370 - 41,045,485 (+)ENTREZGENE
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_009737   ⟹   NP_033867
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39745,219,577 - 45,239,134 (+)NCBI
GRCm38745,570,153 - 45,589,710 (+)NCBI
MGSCv37752,825,733 - 52,845,078 (+)RGD
Celera741,023,370 - 41,045,485 (+)ENTREZGENE
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_017321953   ⟹   XP_017177442
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39745,218,391 - 45,239,134 (+)NCBI
GRCm38745,568,967 - 45,589,710 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017321954   ⟹   XP_017177443
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39745,220,616 - 45,239,134 (+)NCBI
GRCm38745,571,190 - 45,589,710 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003946378
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39745,218,391 - 45,239,134 (+)NCBI
GRCm38745,568,967 - 45,589,710 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_033867   ⟸   NM_009737
- Peptide Label: isoform 1 precursor
- UniProtKB: O35855 (UniProtKB/Swiss-Prot),   O88374 (UniProtKB/TrEMBL),   Q3ULU3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001229981   ⟸   NM_001243052
- Peptide Label: isoform 2
- UniProtKB: O88374 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017177442   ⟸   XM_017321953
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017177443   ⟸   XM_017321954
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSMUSP00000147628   ⟸   ENSMUST00000211173
RefSeq Acc Id: ENSMUSP00000148059   ⟸   ENSMUST00000210811
RefSeq Acc Id: ENSMUSP00000033098   ⟸   ENSMUST00000033098
RefSeq Acc Id: ENSMUSP00000113045   ⟸   ENSMUST00000120864
RefSeq Acc Id: ENSMUSP00000147303   ⟸   ENSMUST00000209410
RefSeq Acc Id: ENSMUSP00000148152   ⟸   ENSMUST00000209204

Promoters
RGD ID:8664049
Promoter ID:EPDNEW_M10055
Type:initiation region
Name:Bcat2_1
Description:Mus musculus branched chain aminotransferase 2, mitochondrial, transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M10056  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38745,570,349 - 45,570,409EPDNEW
RGD ID:8664051
Promoter ID:EPDNEW_M10056
Type:single initiation site
Name:Bcat2_2
Description:Mus musculus branched chain aminotransferase 2, mitochondrial, transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M10055  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38745,571,275 - 45,571,335EPDNEW
RGD ID:6840738
Promoter ID:MM_KWN:50426
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   MEF_B4
Transcripts:AK137126_GM10630,   ENSMUST00000120864,   OTTMUST00000075076,   OTTMUST00000075077
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36752,824,841 - 52,825,762 (+)MPROMDB
RGD ID:6840714
Promoter ID:MM_KWN:50428
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day3,   3T3L1_Day4,   Kidney,   Liver,   Lung
Transcripts:ENSMUST00000120296
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36752,825,771 - 52,826,912 (+)MPROMDB
RGD ID:6840713
Promoter ID:MM_KWN:50429
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day4,   Liver
Transcripts:ENSMUST00000117366
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36752,827,551 - 52,828,672 (+)MPROMDB
RGD ID:6840715
Promoter ID:MM_KWN:50431
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day4,   Liver,   Lung,   Spleen
Transcripts:OTTMUST00000075081,   OTTMUST00000075082
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36752,829,471 - 52,830,522 (+)MPROMDB
RGD ID:6848850
Promoter ID:MM_TRO:8856
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour
Transcripts:MTR012523.7.1531.6
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36752,840,531 - 52,841,031 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1276534 AgrOrtholog
Ensembl Genes ENSMUSG00000030826 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000033098 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000113045 UniProtKB/TrEMBL
  ENSMUSP00000147303 UniProtKB/TrEMBL
  ENSMUSP00000147628 UniProtKB/TrEMBL
  ENSMUSP00000148059 UniProtKB/TrEMBL
  ENSMUSP00000148152 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000033098 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000120864 UniProtKB/TrEMBL
  ENSMUST00000209204 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000209410 UniProtKB/TrEMBL
  ENSMUST00000210811 UniProtKB/TrEMBL
  ENSMUST00000211173 UniProtKB/TrEMBL
Gene3D-CATH 3.20.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.470.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Aminotrans_IV UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Aminotrans_IV_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Aminotransferase-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  B_amino_transII UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BCAT-like_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BCAT-like_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BCAT_family UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12036 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1276534 ENTREZGENE
NCBI Gene 12036 ENTREZGENE
Pfam Aminotran_4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Bcat2 PhenoGen
PIRSF BCAT1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE AA_TRANSFER_CLASS_4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF56752 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGRFAMs ilvE_II UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1B0GQY4_MOUSE UniProtKB/TrEMBL
  A0A1B0GST1_MOUSE UniProtKB/TrEMBL
  A0A1B0GX27_MOUSE UniProtKB/TrEMBL
  BCAT2_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  O88374 ENTREZGENE, UniProtKB/TrEMBL
  Q3ULU3 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary D3Z7C8 UniProtKB/TrEMBL
  Q8VD03 UniProtKB/Swiss-Prot