LINC00665 (long intergenic non-protein coding RNA 665)

Gene: LINC00665 (long intergenic non-protein coding RNA 665) Homo sapiens

Analyze

Symbol:

LINC00665

Name:

long intergenic non-protein coding RNA 665

RGD ID:

6893164

HGNC Page

HGNC:44323

Description:

INTERACTS WITH diallyl disulfide; Diallyl sulfide; dicrotophos

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

VALIDATED

Previously known as:

AC092296.1; CIP2A-BP

Allele / Splice:

See ClinVar data

Latest Assembly:

GRCh38 - Human Genome Assembly GRCh38

Position:

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	36,313,061 - 36,331,718 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	36,259,540 - 36,331,770 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	36,803,963 - 36,822,620 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Cytogenetic Map	19	q13.12	NCBI
HuRef	19	33,272,298 - 33,290,985 (-)	NCBI		HuRef
CHM1_1	19	36,804,320 - 36,822,977 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	38,987,945 - 39,006,613 (-)	NCBI		T2T-CHM13v2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

diallyl disulfide (EXP)

Diallyl sulfide (EXP)

dicrotophos (EXP)

doxorubicin (EXP)

fipronil (EXP)

methylparaben (EXP)

potassium chromate (EXP)

propofol (EXP)

silicon dioxide (EXP)

sodium arsenite (EXP)

valproic acid (EXP)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:14702039	PMID:28418939	PMID:29728556	PMID:30692511	PMID:31736127	PMID:31755573	PMID:31907362	PMID:32083756	PMID:32271427	PMID:32403047	PMID:32423800
PMID:33090388	PMID:33650673	PMID:33658535	PMID:33865827	PMID:33903885	PMID:34171521	PMID:34232917	PMID:34306997	PMID:35395473	PMID:35524876	PMID:35563845	PMID:35635065
PMID:35993712	PMID:36016468	PMID:36219365	PMID:36387061	PMID:37285335	PMID:37563362	PMID:38167456

Genomics

Variants

Variants in LINC00665
1 total Variants

Clinical Variants

Name	Type	Condition(s)	Position(s)	Clinical significance
GRCh38/hg38 19p13.2-q13.31(chr19:11227942-44626354)x3	copy number gain	See cases [RCV000133888]	Chr19:11227942..44626354 [GRCh38] Chr19:11338618..45129651 [GRCh37] Chr19:11199618..49821491 [NCBI36] Chr19:19p13.2-q13.31	pathogenic
GRCh38/hg38 19q12-13.13(chr19:29661858-38114723)x1	copy number loss	See cases [RCV000135879]	Chr19:29661858..38114723 [GRCh38] Chr19:30152765..38605363 [GRCh37] Chr19:34844605..43297203 [NCBI36] Chr19:19q12-13.13	pathogenic
GRCh38/hg38 19q12-13.13(chr19:29671324-37902990)x1	copy number loss	See cases [RCV000136794]	Chr19:29671324..37902990 [GRCh38] Chr19:30162231..38393630 [GRCh37] Chr19:34854071..43085470 [NCBI36] Chr19:19q12-13.13	pathogenic

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	1225
Count of miRNA genes:	593
Interacting mature miRNAs:	649
Transcripts:	ENST00000412740, ENST00000427868, ENST00000438368, ENST00000449434, ENST00000585356, ENST00000590622, ENST00000590657, ENST00000591372
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region

RH93026

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	19	37,756,196 - 37,756,371	UniSTS	GRCh37
GRCh37	19	36,804,041 - 36,804,216	UniSTS	GRCh37
Build 36	19	41,495,881 - 41,496,056	RGD	NCBI36
Cytogenetic Map	19	q13.12	UniSTS
HuRef	19	34,225,701 - 34,225,876	UniSTS
HuRef	19	33,272,376 - 33,272,550	UniSTS
GeneMap99-GB4 RH Map	19	215.74	UniSTS

RH91190

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	19	37,756,196 - 37,756,384	UniSTS	GRCh37
GRCh37	19	36,804,028 - 36,804,216	UniSTS	GRCh37
Build 36	19	41,495,868 - 41,496,056	RGD	NCBI36
Cytogenetic Map	19	q13.12	UniSTS
HuRef	19	34,225,701 - 34,225,889	UniSTS
HuRef	19	33,272,363 - 33,272,550	UniSTS
GeneMap99-GB4 RH Map	19	216.04	UniSTS

D18S21

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	18	8,562,482 - 8,562,642	UniSTS	GRCh37
Build 36	18	8,552,482 - 8,552,642	RGD	NCBI36
Celera	18	8,446,822 - 8,446,982	RGD
HuRef	18	8,526,855 - 8,527,015	UniSTS

STS-N95430

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	19	37,820,249 - 37,820,403	UniSTS	GRCh37
GRCh37	19	36,806,650 - 36,806,796	UniSTS	GRCh37
Build 36	19	41,498,490 - 41,498,638	RGD	NCBI36
Celera	19	34,620,966 - 34,621,120	UniSTS
Celera	19	33,591,587 - 33,591,735	RGD
Celera	19	33,591,587 - 33,591,733	UniSTS
Cytogenetic Map	19	q13.12	UniSTS
HuRef	19	34,223,125 - 34,223,271	UniSTS
HuRef	19	34,270,041 - 34,270,195	UniSTS
GeneMap99-GB4 RH Map	19	217.95	UniSTS
NCBI RH Map	19	407.8	UniSTS

RH79802

Human Assembly	Chr	Position (strand)	Source
Cytogenetic Map	22	q13.33	UniSTS
Cytogenetic Map	13	q14.13	UniSTS
Cytogenetic Map	19	p12	UniSTS
Cytogenetic Map	22	q13.1	UniSTS
Cytogenetic Map	17	q12	UniSTS
Cytogenetic Map	16	p13.3	UniSTS
Cytogenetic Map	8	p11.21	UniSTS
Cytogenetic Map	19	p13.2	UniSTS
Cytogenetic Map	3	p25.3	UniSTS
Cytogenetic Map	22	q13.2	UniSTS
Cytogenetic Map	7	p22	UniSTS
Cytogenetic Map	11	q13	UniSTS
Cytogenetic Map	8	p22	UniSTS
Cytogenetic Map	7	p11.2	UniSTS
Cytogenetic Map	2	p16.1	UniSTS
Cytogenetic Map	16	q22.2	UniSTS
Cytogenetic Map	X	q24	UniSTS
Cytogenetic Map	7	p15.3	UniSTS
Cytogenetic Map	12	q12	UniSTS
Cytogenetic Map	2	q31.2	UniSTS
Cytogenetic Map	1	p13.2	UniSTS
Cytogenetic Map	1	q32	UniSTS
Cytogenetic Map	3	q28	UniSTS
Cytogenetic Map	17	q21.31	UniSTS
Cytogenetic Map	18	q22.3	UniSTS
Cytogenetic Map	2	p25.2	UniSTS
Cytogenetic Map	14	q23.1	UniSTS
Cytogenetic Map	X	q25	UniSTS
Cytogenetic Map	X	q12	UniSTS
Cytogenetic Map	19	p13.11	UniSTS
Cytogenetic Map	19	p13.3	UniSTS
Cytogenetic Map	11	q12.3	UniSTS
Cytogenetic Map	4	q28.1	UniSTS
Cytogenetic Map	11	q13.2	UniSTS
Cytogenetic Map	19	q13.33	UniSTS
Cytogenetic Map	5	p15.3	UniSTS
Cytogenetic Map	17	q25.1	UniSTS
Cytogenetic Map	3	p21.3	UniSTS
Cytogenetic Map	19	q13.12	UniSTS
Cytogenetic Map	11	q14.1	UniSTS
Cytogenetic Map	19	q13.2	UniSTS

D18S21

Human Assembly	Chr	Position (strand)	Source
Cytogenetic Map	6	q21	UniSTS
Cytogenetic Map	8	p11.22	UniSTS
Cytogenetic Map	12	q23.1	UniSTS
Cytogenetic Map	22	q13.2	UniSTS
Cytogenetic Map	19	p12	UniSTS
Cytogenetic Map	19	q13.11	UniSTS
Cytogenetic Map	19	q13.12	UniSTS
Cytogenetic Map	5	p13-p12	UniSTS
Cytogenetic Map	22	q12.1	UniSTS
Cytogenetic Map	18	q21	UniSTS
Cytogenetic Map	6	p21.2	UniSTS
Cytogenetic Map	5	q11.2	UniSTS
Cytogenetic Map	X	p11.4	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system

circulatory system

endocrine system

exocrine system

hemolymphoid system

hepatobiliary system

integumental system

musculoskeletal system

nervous system

renal system

reproductive system

respiratory system

sensory system

visual system

adipose tissue

appendage

entire extraembryonic component

pharyngeal arch

High

Medium

615

143

210

580

118

295

511

Low

2180

2372

826

313

1176

152

3972

1943

3154

295

1151

1092

169

1204

2623

Below cutoff

221

611

283

282

631

282

175

219

164

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NR_038278	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_038279	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC092296	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AI282277	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK090827	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC041949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BU071001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CP068259	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	OA987012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	OA987013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	OA987014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	OA987015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	OA987016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	OA987017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	OA987018	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENST00000412740

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	36,315,005 - 36,331,734 (-)	Ensembl

RefSeq Acc Id:

ENST00000427868

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	36,315,576 - 36,322,228 (-)	Ensembl

RefSeq Acc Id:

ENST00000438368

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	36,319,711 - 36,331,708 (-)	Ensembl

RefSeq Acc Id:

ENST00000449434

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	36,313,061 - 36,331,753 (-)	Ensembl

RefSeq Acc Id:

ENST00000585356

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	36,312,586 - 36,331,707 (-)	Ensembl

RefSeq Acc Id:

ENST00000590622

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	36,319,716 - 36,331,718 (-)	Ensembl

RefSeq Acc Id:

ENST00000590657

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	36,315,035 - 36,331,634 (-)	Ensembl

RefSeq Acc Id:

ENST00000591372

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	36,324,908 - 36,331,756 (-)	Ensembl

RefSeq Acc Id:

ENST00000651681

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	36,324,907 - 36,331,764 (-)	Ensembl

RefSeq Acc Id:

ENST00000656137

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	36,324,924 - 36,331,739 (-)	Ensembl

RefSeq Acc Id:

ENST00000658042

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	36,315,174 - 36,331,699 (-)	Ensembl

RefSeq Acc Id:

ENST00000658126

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	36,313,094 - 36,331,662 (-)	Ensembl

RefSeq Acc Id:

ENST00000658301

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	36,324,924 - 36,330,492 (-)	Ensembl

RefSeq Acc Id:

ENST00000658991

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	36,324,926 - 36,331,734 (-)	Ensembl

RefSeq Acc Id:

ENST00000659786

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	36,315,220 - 36,331,734 (-)	Ensembl

RefSeq Acc Id:

ENST00000661195

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	36,328,694 - 36,331,694 (-)	Ensembl

RefSeq Acc Id:

ENST00000662398

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	36,324,924 - 36,331,466 (-)	Ensembl

RefSeq Acc Id:

ENST00000665982

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	36,315,217 - 36,316,517 (-)	Ensembl

RefSeq Acc Id:

ENST00000666182

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	36,313,067 - 36,331,761 (-)	Ensembl

RefSeq Acc Id:

ENST00000666458

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	36,324,924 - 36,331,756 (-)	Ensembl

RefSeq Acc Id:

ENST00000667789

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	36,324,924 - 36,331,770 (-)	Ensembl

RefSeq Acc Id:

ENST00000667829

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	36,324,924 - 36,331,734 (-)	Ensembl

RefSeq Acc Id:

ENST00000668768

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	36,324,926 - 36,331,734 (-)	Ensembl

RefSeq Acc Id:

ENST00000668927

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	36,313,959 - 36,331,699 (-)	Ensembl

RefSeq Acc Id:

ENST00000674604

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	36,321,030 - 36,322,197 (-)	Ensembl

RefSeq Acc Id:

ENST00000675074

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	36,326,954 - 36,331,701 (-)	Ensembl

RefSeq Acc Id:

ENST00000675167

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	36,316,039 - 36,331,710 (-)	Ensembl

RefSeq Acc Id:

ENST00000675324

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	36,262,260 - 36,321,324 (-)	Ensembl

RefSeq Acc Id:

ENST00000675914

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	36,322,209 - 36,331,756 (-)	Ensembl

RefSeq Acc Id:

ENST00000676298

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	36,320,572 - 36,331,731 (-)	Ensembl

RefSeq Acc Id:

ENST00000676422

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	36,259,540 - 36,264,788 (-)	Ensembl

RefSeq Acc Id:

ENST00000689532

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	36,315,524 - 36,331,677 (-)	Ensembl

RefSeq Acc Id:

ENST00000691592

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	36,313,061 - 36,331,741 (-)	Ensembl

RefSeq Acc Id:

ENST00000702802

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	36,324,907 - 36,331,756 (-)	Ensembl

RefSeq Acc Id:

ENST00000702867

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	36,324,912 - 36,331,677 (-)	Ensembl

RefSeq Acc Id:

NR_038278

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	19	36,319,716 - 36,331,718 (-)	NCBI
GRCh37	19	36,803,963 - 36,822,620 (-)	NCBI
HuRef	19	33,272,298 - 33,290,985 (-)	NCBI
CHM1_1	19	36,810,975 - 36,822,977 (-)	NCBI
T2T-CHM13v2.0	19	38,994,612 - 39,006,613 (-)	NCBI

Sequence:

show sequence

GCAGGTGGCCTCCAGGTGCAAAGTGGGAAGTGTGAGTCCTCAGTCTTGGGCTATTCGGCCACGT
GCCTGCCGGACATGGGACGCTGGAGGGTCAGCAGCGTGGAGTCCTGGCCTTTTGCGTCCACGGG
TGGGAAATTGGCCATTGCCACGGCGGGAACTGGGACTCAGGCTGCCCCCCGGCCGTTTCTCATC
CGTCCACCGGACTCGTGGGCGCTCGCACTGGCGCTGATGTAGTTTCCTGACCTCTGACCCGTAT
TGTCTCCAGATTAAAGGTACGACATTTGGAGGCCCCAGCGAGAAACGTCACCGGGAGAAACGTC
ACCGGGCGAGAGCCGGGCCCGCTGTGTGCTCCCCCGGAAGGACAGCCAGCTTGTAGGGGGGAGT
GCCACCTGAAAAAAAAATTTCCAGGTCCCCAAAGGGTGACCGTCTTCCGGAGGACAGCGGATCG
ACTACCATGTGGGTGCCCACAAAAATTCCACCTCTGAGTCCTCAACTGCTGACCCCGGGGTCAG
TAGACACGGGGTTTCACCATGTTGGCCAGGCCGGTCTTGAACTTGTGACGTCAGGTGATGCACC
CGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGTCCAGATTTTGAACAAATCTCGCTAGAGATT
GAACAGAGCTGCGCCTGGATCCCGCCACAGTGAGGAGACCTGAAGACCAGAGAAAACACAGCAA
ACGGAGTCTTGCTCTGTTGTCCAGGCTGGAGTGTAGTGTGGCGATCTCGGCTCCCTGCAAGAAT
CTGCCTCCCAGATTCACGCCATTTTCCCACCTCAGCCCCTGGAGTAGCTGGAAGTACAGGCTCC
CGCCACCACGCCTGGCTAATTTTGTTTTTGTATTTTTAGTAGAGACGGGGTTTCACTGTGTTAG
GTAGGATGGTCTCGATCTCCTGACCTCATGATCCATCCGCCTTGGCCTCTCAAAGTGCTGGGAT
TACAGGCATGAGCCACCGCACCTGGCTGTTTTTTCATTTCTATTATGATTTGTTCTGTGGAATG
TCAGTGACTTAGCGGTGTTTTTCACATGTTTATAAAGCTGAATAGTTCTGTATGTCAGCTCAGC
ACCCCTAGTGTCAGTCATGCTACTCTCCTGCTGTGCATAGATGGGGGCCTGTCCACACCCAAAT
CTCCTGGGTTCCCGCTGTCCGCACCTGAAGGTACCCACCAGATGTGTCTGTCACTGCCCTCCAT
CCACCTTTCTTGTGGTTCTCATGTTTCTGCCTCCCTAGAGACCATTTCTCTCTACAGCAGTAGT
TTCCAATAGAAATACAATGCCAGACACATACGTCATTTTAGATTTTCTAGTAGTCACTTTAGAA
AAGTGAAAAAGAGGCCAGCTGCAGTGGCTCACACCTGTAATCCCAGCACTTTGGAAGGCTGAGG
TGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCCAACATGGTGAAACCCCCTCTCTA
CTAAAAATACAAAAAATTAGCTGGGCGTGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGAGAGG
CTGAGGCAGGAGAATGGCGTGAACCCGGTAGGCAGAGCTTGCAGTGAGCCGAGATAGCGCCACT
GCACTCCAGCCTGGGCGACAGAGGGAGACTCCATCTCAAAAAAAAAAAAAAGGTTACAAAGAAA
CAGGTGAAATTAGTTTTATTTCACCTAAAATGTTAGCATTATCCAAAATATCACTTCAACATCT
TATCAAAATAAAAATTATTAA

hide sequence

RefSeq Acc Id:

NR_038279

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	19	36,313,061 - 36,331,718 (-)	NCBI
GRCh37	19	36,803,963 - 36,822,620 (-)	NCBI
HuRef	19	33,272,298 - 33,290,985 (-)	NCBI
CHM1_1	19	36,804,320 - 36,822,977 (-)	NCBI
T2T-CHM13v2.0	19	38,987,945 - 39,006,613 (-)	NCBI

Sequence:

show sequence

GCAGGTGGCCTCCAGGTGCAAAGTGGGAAGTGTGAGTCCTCAGTCTTGGGCTATTCGGCCACGT
GCCTGCCGGACATGGGACGCTGGAGGGTCAGCAGCGTGGAGTCCTGGCCTTTTGCGTCCACGGG
TGGGAAATTGGCCATTGCCACGGCGGGAACTGGGACTCAGGCTGCCCCCCGGCCGTTTCTCATC
CGTCCACCGGACTCGTGGGCGCTCGCACTGGCGCTGATGTAGTTTCCTGACCTCTGACCCGTAT
TGTCTCCAGATTAAAGGTACGACATTTGGAGGCCCCAGCGAGAAACGTCACCGGGAGAAACGTC
ACCGGGCGAGAGCCGGGCCCGCTGTGTGCTCCCCCGGAAGGACAGCCAGCTTGTAGGGGGGAGT
GCCACCTGAAAAAAAAATTTCCAGGTCCCCAAAGGGTGACCGTCTTCCGGAGGACAGCGGATCG
ACTACCATGTGGGTGCCCACAAAAATTCCACCTCTGAGTCCTCAACTGCTGACCCCGGGGTCAG
GTCCAGATTTTGAACAAATCTCGCTAGAGATTGAACAGAGCTGCGCCTGGATCCCGCCACAGTG
AGGAGACCTGAAGACCAGAGAAAACACAGCAAGCCCCTGGATCCTCCTGGAATCCCCGATCCCT
CTTGCTCCCTGGCAGAGTTTTCTAGTCCCTCTTACTTGAAGCATGTCTTTCAGAGCCCGGCACC
ACCCATCTTGAGTATCTGATACCCCATCAGCCTGAGTCTCTTAAAGGCCTTTATACACATATGT
CTACACATAGGGATTTGGATGATCTCGGGATCCCACATCCTCGCTGTCCCCTGTCCCCCCGCAA
CATCCCCCACCAATACCTTTCTGAAGTTTTCTAGTCCCTCCTTTTTGTTTGTGCTCCTTAAAGC
CCAGCCCCATGCCTGACTTTGGTTCCCAGTGAGCATTGTACATTTGTGGATATTAAATCTTTGG
CAAAGTCATTTACCTGGGCTGGAAAAAA

hide sequence

Promoters

RGD ID:

15097238

Promoter ID:

EPDNEWNC_H2049

Type:

initiation region

Name:

LINC00665_2

Description:

long intergenic non-protein coding RNA 665 [Source:HGNCSymbol;Acc:HGNC:44323]

SO ACC ID:

SO:0000170

Source:

EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.; Paired-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	19	36,330,481 - 36,330,541	EPDNEWNC

RGD ID:

15097246

Promoter ID:

EPDNEWNC_H2050

Type:

initiation region

Name:

LINC00665_1

Description:

long intergenic non-protein coding RNA 665 [Source:HGNCSymbol;Acc:HGNC:44323]

SO ACC ID:

SO:0000170

Source:

EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.; Paired-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	19	36,331,718 - 36,331,778	EPDNEWNC

Additional Information

External Database Links

Database	Acc Id	Source(s)
COSMIC	LINC00665	COSMIC
Ensembl Genes	ENSG00000232677	Ensembl, ENTREZGENE
Ensembl Transcript	ENST00000449434	ENTREZGENE
	ENST00000590622	ENTREZGENE
GTEx	ENSG00000232677	GTEx
HGNC ID	HGNC:44323	ENTREZGENE
Human Proteome Map	LINC00665	Human Proteome Map
NCBI Gene	LINC00665	ENTREZGENE
RNAcentral	URS000024466C	RNACentral
	URS000075E076	RNACentral

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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