Cldn7 (claudin 7) - Rat Genome Database
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Gene: Cldn7 (claudin 7) Mus musculus
Analyze
Symbol: Cldn7
Name: claudin 7
RGD ID: 68647
MGI Page MGI
Description: Predicted to have cell adhesion molecule binding activity and protein domain specific binding activity. Predicted to be involved in several processes, including bicellular tight junction assembly; negative regulation of protein-containing complex assembly; and positive regulation of cell motility. Localizes to several cellular components, including apicolateral plasma membrane; bicellular tight junction; and lateral plasma membrane. Is expressed in several structures, including alimentary system; early conceptus; olfactory epithelium; respiratory system; and urinary system. Orthologous to human CLDN7 (claudin 7).
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: claudin-7
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391169,855,605 - 69,858,712 (+)NCBIGRCm39mm39
GRCm381169,964,779 - 69,967,886 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1169,964,779 - 69,967,885 (+)EnsemblGRCm38mm10GRCm38
MGSCv371169,779,003 - 69,781,380 (+)NCBIGRCm37mm9NCBIm37
MGSCv361169,781,696 - 69,784,073 (+)NCBImm8
Celera1177,513,435 - 77,515,812 (+)NCBICelera
Cytogenetic Map11B3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dichloroethane  (EXP)
1-naphthyl isothiocyanate  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-acetamidofluorene  (ISO)
2-hydroxypropanoic acid  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (EXP)
4-hydroxyphenyl retinamide  (EXP)
5-aza-2'-deoxycytidine  (ISO)
acetylsalicylic acid  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (EXP)
ammonium chloride  (ISO)
ampicillin  (ISO)
arsane  (EXP,ISO)
arsenic atom  (EXP,ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (EXP,ISO)
beta-naphthoflavone  (ISO)
bexarotene  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (ISO)
bisphenol F  (EXP)
butan-1-ol  (ISO)
calcitriol  (ISO)
carbamazepine  (ISO)
choline  (EXP)
cisplatin  (ISO)
crocidolite asbestos  (EXP)
cyclosporin A  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dibenz[a,h]anthracene  (ISO)
dibenzo[a,l]pyrene  (ISO)
diethylstilbestrol  (EXP)
dorsomorphin  (ISO)
entinostat  (ISO)
ethanol  (ISO)
flavonoids  (ISO)
fluoranthene  (ISO)
folic acid  (EXP,ISO)
folpet  (EXP)
furan  (ISO)
genistein  (EXP)
gentamycin  (ISO)
hydrogen peroxide  (ISO)
indometacin  (ISO)
L-methionine  (EXP)
leflunomide  (ISO)
mercury dibromide  (ISO)
methotrexate  (EXP,ISO)
metronidazole  (ISO)
N-methyl-N-nitrosourea  (ISO)
N-nitrosodiethylamine  (EXP,ISO)
neomycin  (ISO)
nickel atom  (ISO)
okadaic acid  (ISO)
panobinostat  (ISO)
paracetamol  (ISO)
phenethyl caffeate  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
rac-lactic acid  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sirolimus  (ISO)
sodium arsenite  (EXP,ISO)
sodium dichromate  (ISO)
sodium dodecyl sulfate  (ISO)
sulforaphane  (ISO)
tacrolimus hydrate  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
tributylstannane  (EXP)
trichostatin A  (ISO)
valproic acid  (ISO)
vancomycin  (EXP,ISO)
vorinostat  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:10349636   PMID:10601346   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11923212   PMID:12477932   PMID:14610273   PMID:14681479   PMID:14722018   PMID:15175265   PMID:15366020  
PMID:15489334   PMID:15743505   PMID:16049341   PMID:16141072   PMID:16141073   PMID:16470614   PMID:16602821   PMID:16651389   PMID:16998848   PMID:17075866   PMID:17400193   PMID:18036336  
PMID:18195351   PMID:18480174   PMID:18519685   PMID:18666097   PMID:19318328   PMID:19706201   PMID:19717565   PMID:19759267   PMID:20077120   PMID:20692235   PMID:21267068   PMID:21873635  
PMID:22044670   PMID:22155109   PMID:22178591   PMID:22194864   PMID:22275141   PMID:22819673   PMID:22946046   PMID:23505542   PMID:23610556   PMID:24449835   PMID:24603431   PMID:24737165  
PMID:25691495   PMID:26184908   PMID:26340953   PMID:27173853   PMID:27291930   PMID:28094766   PMID:28793255   PMID:29317263   PMID:29488037   PMID:29617460   PMID:30143634   PMID:30774273  
PMID:31171776   PMID:31382627   PMID:32093310  


Genomics

Comparative Map Data
Cldn7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391169,855,605 - 69,858,712 (+)NCBIGRCm39mm39
GRCm381169,964,779 - 69,967,886 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1169,964,779 - 69,967,885 (+)EnsemblGRCm38mm10GRCm38
MGSCv371169,779,003 - 69,781,380 (+)NCBIGRCm37mm9NCBIm37
MGSCv361169,781,696 - 69,784,073 (+)NCBImm8
Celera1177,513,435 - 77,515,812 (+)NCBICelera
Cytogenetic Map11B3NCBI
CLDN7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl177,259,903 - 7,263,983 (-)EnsemblGRCh38hg38GRCh38
GRCh38177,259,903 - 7,263,213 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37177,163,222 - 7,166,532 (-)NCBIGRCh37GRCh37hg19GRCh37
GRCh37177,163,222 - 7,166,863 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36177,103,946 - 7,106,519 (-)NCBINCBI36hg18NCBI36
Build 34177,104,183 - 7,106,513NCBI
Celera177,187,867 - 7,191,157 (-)NCBI
Cytogenetic Map17p13.1NCBI
HuRef177,054,628 - 7,057,918 (-)NCBIHuRef
CHM1_1177,172,020 - 7,175,309 (-)NCBICHM1_1
Cldn7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21054,689,684 - 54,692,177 (+)NCBI
Rnor_6.0 Ensembl1056,576,428 - 56,578,626 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01056,576,326 - 56,578,632 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01056,321,522 - 56,323,751 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41056,810,947 - 56,813,134 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11056,825,014 - 56,826,754 (+)NCBI
Celera1053,843,619 - 53,845,806 (+)NCBICelera
Cytogenetic Map10q24NCBI
Cldn7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554679,652,093 - 9,654,291 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554679,652,093 - 9,654,291 (+)NCBIChiLan1.0ChiLan1.0
CLDN7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1177,277,313 - 7,281,859 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl177,277,313 - 7,281,859 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0177,289,766 - 7,292,433 (-)NCBIMhudiblu_PPA_v0panPan3
CLDN7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl532,224,040 - 32,226,168 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1532,223,985 - 32,225,795 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Cldn7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936595550,359 - 552,214 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLDN7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1252,612,507 - 52,628,362 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11252,612,517 - 52,628,376 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21254,822,459 - 54,828,675 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CLDN7
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1166,632,695 - 6,635,994 (-)NCBI
ChlSab1.1 Ensembl166,630,412 - 6,635,327 (-)Ensembl
Cldn7
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247869,873,555 - 9,875,743 (-)NCBI

Position Markers
Cldn7  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv371169,780,739 - 69,781,158UniSTSGRCm37
Celera1177,515,171 - 77,515,590UniSTS
Cytogenetic Map11B4UniSTS
cM Map11 UniSTS
Cldn7  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11B4UniSTS
Cldn7  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11B4UniSTS
Cldn7  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381169,967,237 - 69,967,656UniSTSGRCm38
MGSCv371169,780,739 - 69,781,158UniSTSGRCm37
Celera1177,515,171 - 77,515,590UniSTS
Cytogenetic Map11B4UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11330000072800000Mouse
13208559Wght10_mweight 10 (mouse)11400000089000000Mouse
13208558Lgth12_mbody length 12 (mouse)11400000095000000Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11693027789128908Mouse
1357859Lvrq7_mliver weight QTL 7 (mouse)Not determined1112318637118131898Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112318637118131898Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1917420497007000Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112185736495990405Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113600000085000000Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113639175083590530Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113661246070618665Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113672273870723028Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113719011571190238Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113812528972125383Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114236579176365904Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114236579176365904Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114473921176963931Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44739211113167183Mouse
4141000Nidd3_mnon-insulin-dependent diabetes mellitus 3 (mouse)Not determined4515120179151308Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114527504680087498Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114581775489927907Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114629434180294436Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114642858180428696Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115018736584187585Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115260355986603559Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115349976287499911Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115423592683842826Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5539415972319101Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156973201114267131Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115786383491863932Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115859972974863932Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15861720487804412Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5882844085175703Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116179599488808902Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116226517996265327Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162700000109500000Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116342858181939647Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116342858194173092Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116493951098939647Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116493951098939647Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116493951098939647Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166842594100842826Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166842594100842826Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66842594100842826Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166842594100842826Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166842594100842826Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166842594100842826Mouse
4142316Ity2b_mimmunity to S. typhimurium 2b (mouse)Not determined116718736579923086Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168300000102000000Mouse
36049778Ars6_mantibody response to SARS-CoV 6, day 15, IgM (mouse)116910000072600000Mouse
36049779Ars7_mantibody response to SARS-CoV 7, day 29, IgG1 (mouse)116910000072600000Mouse
36049784Ars8_mantibody response to SARS-CoV 8, day 29, IgG2a+IgG2c (mouse)116910000072600000Mouse
36049785Ars9_mantibody response to SARS-CoV 9, day 29, IgM (mouse)116910000072600000Mouse
36049786Ars10_mantibody response to SARS-CoV 10, 4 days post-rechallenge, IgG2a+IgG2c (mouse)116910000072600000Mouse
36049787Ars11_mantibody response to SARS-CoV 11, 4 days post-rechallenge, IgM (mouse)116910000072600000Mouse
36049788Ars1_mantibody response to SARS-CoV 1, day 7, IgG1 (mouse)116910000072600000Mouse
36049789Ars2_mantibody response to SARS-CoV 2, day 7, IgG2a+IgG2c (mouse)116910000072600000Mouse
36049790Ars3_mantibody response to SARS-CoV 3, day 7, IgG2b (mouse)116910000072600000Mouse
36049791Ars4_mantibody response to SARS-CoV 4, day 7, IgG3 (mouse)116910000072600000Mouse
36049792Ars5_mantibody response to SARS-CoV 5, day 7, IgM (mouse)116910000072600000Mouse
35673314Ari2_mantibody response to influenza 2, day 10, IgG3 (mouse)116910000072600000Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1165
Count of miRNA genes:416
Interacting mature miRNAs:492
Transcripts:ENSMUST00000018713, ENSMUST00000060651, ENSMUST00000108596, ENSMUST00000108597, ENSMUST00000151515
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000018713   ⟹   ENSMUSP00000018713
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1169,965,396 - 69,967,885 (+)Ensembl
RefSeq Acc Id: ENSMUST00000060651   ⟹   ENSMUSP00000090725
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1169,964,824 - 69,966,969 (+)Ensembl
RefSeq Acc Id: ENSMUST00000108596   ⟹   ENSMUSP00000104237
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1169,964,835 - 69,967,882 (+)Ensembl
RefSeq Acc Id: ENSMUST00000108597   ⟹   ENSMUSP00000104238
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1169,964,779 - 69,967,810 (+)Ensembl
RefSeq Acc Id: ENSMUST00000151515   ⟹   ENSMUSP00000137627
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1169,966,918 - 69,967,652 (+)Ensembl
RefSeq Acc Id: NM_001193619   ⟹   NP_001180548
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391169,855,605 - 69,858,712 (+)NCBI
GRCm381169,964,779 - 69,967,886 (+)ENTREZGENE
Celera1177,512,713 - 77,515,820 (+)ENTREZGENE
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_016887   ⟹   NP_058583
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391169,856,247 - 69,858,712 (+)NCBI
GRCm381169,965,421 - 69,967,886 (+)NCBI
MGSCv371169,779,003 - 69,781,380 (+)RGD
Celera1177,512,713 - 77,515,820 (+)ENTREZGENE
cM Map11 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_058583   ⟸   NM_016887
- Peptide Label: precursor
- UniProtKB: Q9Z261 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001180548   ⟸   NM_001193619
- Peptide Label: precursor
- UniProtKB: Q9Z261 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000104238   ⟸   ENSMUST00000108597
RefSeq Acc Id: ENSMUSP00000104237   ⟸   ENSMUST00000108596
RefSeq Acc Id: ENSMUSP00000137627   ⟸   ENSMUST00000151515
RefSeq Acc Id: ENSMUSP00000090725   ⟸   ENSMUST00000060651
RefSeq Acc Id: ENSMUSP00000018713   ⟸   ENSMUST00000018713

Promoters
RGD ID:6820621
Promoter ID:MM_KWN:8157
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:ENSMUST00000060651,   ENSMUST00000108596,   ENSMUST00000108597,   OTTMUST00000013494
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361169,778,931 - 69,779,431 (+)MPROMDB
RGD ID:6820622
Promoter ID:MM_KWN:8158
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Lung,   MEF_B6
Transcripts:OTTMUST00000038133
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361169,779,681 - 69,780,902 (+)MPROMDB
RGD ID:8675262
Promoter ID:EPDNEW_M15661
Type:single initiation site
Name:Cldn7_2
Description:Mus musculus claudin 7 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15662  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381169,964,873 - 69,964,933EPDNEW
RGD ID:8675264
Promoter ID:EPDNEW_M15662
Type:multiple initiation site
Name:Cldn7_1
Description:Mus musculus claudin 7 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15661  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381169,965,501 - 69,965,561EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1859285 AgrOrtholog
Ensembl Genes ENSMUSG00000018569 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000018713 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000090725 UniProtKB/TrEMBL
  ENSMUSP00000104237 UniProtKB/TrEMBL
  ENSMUSP00000104238 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000137627 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000018713 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000060651 UniProtKB/TrEMBL
  ENSMUST00000108596 UniProtKB/TrEMBL
  ENSMUST00000108597 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000151515 UniProtKB/TrEMBL
InterPro Claudin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Claudin7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Claudin_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PMP22/EMP/MP20/Claudin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:53624 UniProtKB/Swiss-Prot
MGD MGI:1859285 ENTREZGENE
NCBI Gene 53624 ENTREZGENE
PANTHER PTHR12002 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PMP22_Claudin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cldn7 PhenoGen
PRINTS CLAUDIN7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE CLAUDIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A4IF49_MOUSE UniProtKB/TrEMBL
  B1AR46_MOUSE UniProtKB/TrEMBL
  B1AR47_MOUSE UniProtKB/TrEMBL
  CLD7_MOUSE UniProtKB/Swiss-Prot
  J3QQ48_MOUSE UniProtKB/TrEMBL
  Q9Z261 ENTREZGENE
UniProt Secondary Q3TJX4 UniProtKB/Swiss-Prot