Aldh9a1 (aldehyde dehydrogenase 9, subfamily A1) - Rat Genome Database

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Gene: Aldh9a1 (aldehyde dehydrogenase 9, subfamily A1) Mus musculus
Analyze
Symbol: Aldh9a1
Name: aldehyde dehydrogenase 9, subfamily A1
RGD ID: 68604
MGI Page MGI
Description: Enables 4-trimethylammoniobutyraldehyde dehydrogenase activity. Involved in carnitine biosynthetic process. Acts upstream of or within carnitine metabolic process. Located in cytosol. Is expressed in several structures, including alimentary system; cranium; male reproductive gland or organ; metanephros; and nervous system. Orthologous to human ALDH9A1 (aldehyde dehydrogenase 9 family member A1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4-trimethylaminobutyraldehyde dehydrogenase; AA139417; Abaldh; aldehyde dehydrogenase family 9 member A1; ESTM4; ESTM40; formaldehyde dehydrogenase; gamma-aminobutyraldehyde dehydrogenase; TMABA-; TMABA-DH; Tmabadh
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm2629  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391167,177,560 - 167,196,100 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1167,177,560 - 167,196,101 (+)EnsemblGRCm39 Ensembl
GRCm381167,349,963 - 167,368,530 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1167,349,991 - 167,368,532 (+)EnsemblGRCm38mm10GRCm38
MGSCv371169,280,122 - 169,298,661 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361169,186,888 - 169,204,961 (+)NCBIMGSCv36mm8
Celera1169,767,504 - 169,786,077 (+)NCBICelera
Cytogenetic Map1H2.3NCBI
cM Map174.74NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
(1->4)-beta-D-glucan  (EXP)
1,2-dimethylhydrazine  (EXP)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (ISO)
2,6-dimethoxyphenol  (ISO)
2-hydroxypropanoic acid  (ISO)
3-chloropropane-1,2-diol  (ISO)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (ISO)
acetaldehyde  (EXP,ISO)
all-trans-retinoic acid  (ISO)
amitrole  (ISO)
ammonium chloride  (ISO)
arecoline  (ISO)
arsenite(3-)  (ISO)
azoxystrobin  (ISO)
benzo[a]pyrene  (EXP,ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
bromobenzene  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
cannabidiol  (ISO)
chlorpyrifos  (ISO)
choline  (EXP,ISO)
ciprofibrate  (EXP)
cisplatin  (ISO)
clofibrate  (EXP)
clofibric acid  (EXP)
clotrimazole  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
dibutyl phthalate  (EXP,ISO)
doxorubicin  (ISO)
fenpyroximate  (ISO)
flutamide  (ISO)
folic acid  (EXP,ISO)
fulvestrant  (ISO)
furfural  (ISO)
gentamycin  (ISO)
glafenine  (ISO)
glyphosate  (ISO)
hydralazine  (ISO)
imidacloprid  (ISO)
indometacin  (ISO)
inulin  (EXP)
isobutanol  (ISO)
ivermectin  (ISO)
L-methionine  (EXP,ISO)
lead(0)  (ISO)
lipopolysaccharide  (ISO)
methapyrilene  (ISO)
methimazole  (ISO)
methoxyacetic acid  (ISO)
methylmercury chloride  (ISO)
microcystin-LR  (ISO)
Monobutylphthalate  (ISO)
ozone  (ISO)
paclitaxel  (ISO)
paracetamol  (EXP,ISO)
perfluorododecanoic acid  (ISO)
perfluorohexanesulfonic acid  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (EXP,ISO)
phenobarbital  (ISO)
PhIP  (ISO)
picoxystrobin  (ISO)
pirinixic acid  (EXP)
quercetin  (ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
sodium chloride  (ISO)
sulfadimethoxine  (ISO)
sunitinib  (ISO)
tacrolimus hydrate  (EXP)
tetrachloromethane  (ISO)
thiabendazole  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
triphenyl phosphate  (ISO)
valproic acid  (EXP,ISO)
vancomycin  (EXP)
vinclozolin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO)
cytosol  (IDA,ISO)
mitochondrion  (HDA)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Physical and transcriptional map of a 3-Mb region of mouse chromosome 1 containing the gene for the neural tube defect mutant loop-tail (Lp). Eddleston J, etal., Genomics 1999 Mar 1;56(2):149-59.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
8. Mouse MP Annotation Import Pipeline RGD automated import pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Molecular and biochemical characterization of rat gamma-trimethylaminobutyraldehyde dehydrogenase and evidence for the involvement of human aldehyde dehydrogenase 9 in carnitine biosynthesis. Vaz FM, etal., J Biol Chem 2000 Mar 10;275(10):7390-4.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14681479   PMID:15489334   PMID:15597075   PMID:15782199   PMID:16141072   PMID:16141073  
PMID:18614015   PMID:18799693   PMID:18971422   PMID:19521566   PMID:21677750   PMID:21873635   PMID:22285688   PMID:24194600   PMID:27626380   PMID:28245920   PMID:32325033   PMID:32554809  
PMID:33517883   PMID:34321999   PMID:36114006   PMID:36417873   PMID:38355793  


Genomics

Comparative Map Data
Aldh9a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391167,177,560 - 167,196,100 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1167,177,560 - 167,196,101 (+)EnsemblGRCm39 Ensembl
GRCm381167,349,963 - 167,368,530 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1167,349,991 - 167,368,532 (+)EnsemblGRCm38mm10GRCm38
MGSCv371169,280,122 - 169,298,661 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361169,186,888 - 169,204,961 (+)NCBIMGSCv36mm8
Celera1169,767,504 - 169,786,077 (+)NCBICelera
Cytogenetic Map1H2.3NCBI
cM Map174.74NCBI
ALDH9A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381165,662,216 - 165,698,562 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1165,662,216 - 165,698,562 (-)EnsemblGRCh38hg38GRCh38
GRCh371165,631,453 - 165,667,799 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361163,898,073 - 163,934,524 (-)NCBINCBI36Build 36hg18NCBI36
Build 341162,363,110 - 162,399,758NCBI
Celera1138,736,605 - 138,773,321 (-)NCBICelera
Cytogenetic Map1q24.1NCBI
HuRef1136,878,922 - 136,915,629 (-)NCBIHuRef
CHM1_11167,054,030 - 167,090,476 (-)NCBICHM1_1
T2T-CHM13v2.01165,008,653 - 165,044,991 (-)NCBIT2T-CHM13v2.0
Aldh9a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81382,038,679 - 82,055,478 (+)NCBIGRCr8
mRatBN7.21379,505,738 - 79,522,539 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1379,505,695 - 79,540,568 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1382,135,618 - 82,152,413 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01383,442,832 - 83,459,515 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01380,680,560 - 80,697,225 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01385,580,828 - 85,597,497 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1385,580,828 - 85,597,493 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01390,223,961 - 90,240,186 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41383,017,312 - 83,034,047 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11383,031,512 - 83,047,451 (+)NCBI
Celera1379,210,686 - 79,227,775 (+)NCBICelera
Cytogenetic Map13q24NCBI
Aldh9a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495546210,998,147 - 11,017,360 (+)NCBIChiLan1.0ChiLan1.0
ALDH9A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2184,066,891 - 84,103,431 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1183,735,548 - 83,772,060 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01141,094,261 - 141,130,613 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11144,883,828 - 144,919,718 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1144,883,839 - 144,919,670 (-)Ensemblpanpan1.1panPan2
ALDH9A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13817,644,464 - 17,664,462 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3817,644,459 - 17,663,886 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3817,701,135 - 17,721,198 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03817,699,030 - 17,719,264 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3817,699,044 - 17,719,263 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13817,698,130 - 17,718,197 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03818,049,253 - 18,069,354 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03818,343,405 - 18,363,616 (+)NCBIUU_Cfam_GSD_1.0
Aldh9a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344101,783,295 - 101,803,263 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493648119,630,045 - 19,650,009 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ALDH9A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1485,029,914 - 85,057,650 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2492,685,909 - 92,713,569 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ALDH9A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12563,184,220 - 63,223,865 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605564,944,943 - 64,983,521 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Aldh9a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248263,994,183 - 4,026,696 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248263,994,188 - 4,026,437 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Aldh9a1
1148 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:336
Count of miRNA genes:272
Interacting mature miRNAs:300
Transcripts:ENSMUST00000028004
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301523Ccrs1_mcorpus callosum hemisphere surface size 1 (mouse)Not determined1139602037173602216Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
12790987Tgl5_mtriglyceride 5 (mouse)1160097157194097157Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
12790984Pcho7_mplasma cholesterol 7 (mouse)1147219390181219390Mouse
12790988Phdlc5_mplasma HDL cholesterol 5 (mouse)9160097157194097157Mouse
1300740Tne1_mtotal number errors (mouse)Not determined1139602037173602216Mouse
12790996Aath2_maortic arch atherosclerosis 2 (mouse)1145077630179077630Mouse
12791001Aath6_maortic arch atherosclerosis 6 (mouse)1147219390181219390Mouse
1300745Gvhd1_mgraft-versus-host disease 1 (mouse)Not determined1157456299191456436Mouse
10412162Nobq3_mNew Zealand obese QTL 3 (mouse)Not determined1103933405191225397Mouse
4141346Skmw12_mskeletal muscle weight 12 (mouse)Not determined150756737184756922Mouse
1357618Splq5_mspleen weight QTL 5 (mouse)Not determined1150193673188359312Mouse
1301301Sle1_msystemic lupus erythmatosus susceptibility 1 (mouse)Not determined1152038741186038913Mouse
1301818Ap1q_malcohol preference 1 QTL (mouse)Not determined1146908199167586222Mouse
12904936Edlmmq1_mextensor digitorum longus muscle mass QTL 1 (mouse)1155002940189002940Mouse
1301565Mnotch_mmodifier of Notch (mouse)Not determined1157456299191456436Mouse
1301309Emo1_memotionality 1 (mouse)Not determined1162977097185994196Mouse
1301025Lbw7_mlupus NZB x NZW 7 (mouse)Not determined1152038741186038913Mouse
12904944Tammq1_mtibialis anterior muscle mass QTL 1 (mouse)1155002940189002940Mouse
1357602Vtbt2_mvertebral trabecular bone trait 2 (mouse)Not determined1139602037173602216Mouse
12904957Gmmq1_mgastrocnemius muscle mass QTL 1 (mouse)1155002940189002940Mouse
1300777Chol10_mcholesterol 10 (mouse)Not determined9147875502181875616Mouse
1302098Eila1_methanol induced locomotor activity 1 (mouse)Not determined1112008822175468938Mouse
1300823Ath9_matherosclerosis 9 (mouse)Not determined1160112768194112883Mouse
1300571Opfa_mopen field activity (mouse)Not determined1144531347178531592Mouse
1301339Hdlq15_mHDL QTL 15 (mouse)Not determined1165873675195154279Mouse
1301596Elnt_mescape latencies during navigation task (mouse)Not determined1162145207194111528Mouse
4141165Bglu3_mblood glucose level 3 (mouse)Not determined155831765189831892Mouse
1357889Lprq3_mlipoprotein QTL 3 (mouse)Not determined1152038741186038913Mouse
4141160Cq1_mcholesterol QTL 1 (mouse)Not determined1139452188173452308Mouse
4142182Shali5_msurvival time to hyperoxic acute lung injury 5 (mouse)Not determined155582237185994196Mouse
10402498Lmr20_mleishmaniasis resistance 20 (mouse)Not determined1158468817192468938Mouse
1301619Cafq1_mcaffeine metabolism QTL 1 (mouse)Not determined1155716221189716369Mouse
4141149Hbnr4_mHeligmosomoides bakeri nematode resistance 4 (mouse)Not determined147125258188983224Mouse
10043899Hdlq99_mHDL QTL 99 (mouse)Not determined1147875502181875616Mouse
11537365Cnes4_mC. neoformans susceptibility locus 4 (mouse)1144449142178449142Mouse
11081167Tir8_mtrypanosome infection response 8 (mouse)1155716221189716369Mouse
1302132Pbw1_mpentobarbital withdrawal QTL 1 (mouse)Not determined1155831765189831892Mouse
1357434Obsty1_mobesity 1 (mouse)Not determined1136209950170210094Mouse
4142159Nba2_mNew Zealand Black autoimmunity 2 (mouse)Not determined151835111185835280Mouse
1301602Bslm4_mbasal locomotor activity 4 (mouse)Not determined1157456299191456436Mouse
1301866Cplaq3_mcircadian period of locomotor activity 3 (mouse)Not determined1155721528189722608Mouse
1300842Sle9_msystematic lupus erythematosus susceptibility 9 (mouse)Not determined1158468817192468938Mouse
4142149Ctex_mCtla4 expression QTL (mouse)Not determined1153557406175468938Mouse
1301614Cgnz1_mchronic glomerulonephritis in NZM 1 (mouse)Not determined1152038741186038913Mouse
12910521Scgq1_mspontaneous crescentic glomerulonephritis QTL 1 (mouse)1156602037176262693Mouse
12910522Scgq2_mspontaneous crescentic glomerulonephritis QTL 2 (mouse)1147125258171632257Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
4142014Wbcq5_mwhite blood cell quantitative locus 5 (mouse)Not determined1141095010175095156Mouse
4141245Cq2_mcholesterol QTL 2 (mouse)Not determined1157456299191456436Mouse
4141244Bmd5c_mbone mineral density 5c (mouse)Not determined155526796189526897Mouse
14746980Manh50_mmandible shape 50 (mouse)1134131564168131564Mouse
13464138Hdlq107_mHDL QTL 107 (mouse)1152132744186132744Mouse
1300888Berr1_mberghei resistance locus 1 (mouse)Not determined1164143227190534272Mouse
1301151Hdlq14_mHDL QTL 14 (mouse)Not determined1142489543176489734Mouse
1301149Lrnx12_mlearning-contextual 12 (mouse)Not determined1112008822168186402Mouse
4141233Femwf12_mfemur work to failure 12 (mouse)Not determined141233173175233272Mouse
1301122Cd8mts1_mCD8 T memory cell subset 1 (mouse)Not determined1155831765189831892Mouse
1301632Bw8q1_mbody weight at 8 weeks QTL 1 (mouse)Not determined1161201261195154279Mouse
1301894Skull2_mskull morphology 2 (mouse)Not determined1139602037173602216Mouse
1301385Radpf2_mradiation pulmonary fibrosis 2 (mouse)Not determined1147125258182873798Mouse
1301134Bmd1_mbone mineral density 1 (mouse)Not determined1156602037189303617Mouse
13452397Leusq4_mleucocytosis susceptibility QTL 4 (mouse)1156602037170803640Mouse
1357493Lgaq3_mlate growth adjusted QTL 3 (mouse)Not determined1150193673188359312Mouse
11251722Ewc1_methanol withdrawal and consumption 1 (mouse)1152132744186132744Mouse
1302193Cpfd1_mcerebellum pattern fissures (mouse)Not determined1139602037173602216Mouse
10043963Obq25_mobesity QTL 25 (mouse)Not determined1154410512188410512Mouse
13452393Ity3b_mimmunity to S. typhimurium 3b (mouse)1156497439172097436Mouse
1301431Pcho1_mplasma cholesterol 1 (mouse)Not determined1159262573193262693Mouse
13452394Leusq1_mleucocytosis susceptibility QTL 1 (mouse)1156602037168186402Mouse
1301408Lore8_mloss of righting induced by ethanol 8 (mouse)Not determined1135877901169878015Mouse
10412074Nhdlt1_mnon-HDL cholesterol and triglyceride levels 1 (mouse)Not determined1153675990187676105Mouse
1357485Lgq4_mlate growth QTL 4 (mouse)Not determined1150193673188359312Mouse
1301932Ssta2_msusceptibility to Salmonella typhimurium antigens 2 (mouse)Not determined1155716221189716369Mouse
27095901Scvln8_msacral vertebrae length 2, 10 week (mouse)194127725172027567Mouse
11049576Lmr8a_mleishmaniasis resistance 8a (mouse)1139602037173602216Mouse
1301458Skts8_mskin tumor susceptibility 8 (mouse)Not determined1135794822169795012Mouse
1301202Yaa4_mY-linked autoimmune acceleration 4 (mouse)Not determined1158468817192468938Mouse
10054490Opefa_mopen field activity (mouse)Not determined1153712853187712853Mouse
1300948Fglu2_mfasting glucose 2 (mouse)Not determined1157456299191456436Mouse
1301467Pcir1_mperiosteal circumference 1 (mouse)Not determined1141233173175233272Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
1300696Bpq2_mblood pressure QTL 2 (mouse)Not determined1139602037173602216Mouse
11059556Lmr20b_mleishmaniasis resistance 20b (mouse)1158468817192468938Mouse
4141554Cfmq1_mcystic fibrosis modifier QTL 1 (mouse)Not determined1152038741186038913Mouse
11059557Lmr20a_mleishmaniasis resistance 20a (mouse)1158468817192468938Mouse
11059558Lmr20c_mleishmaniasis resistance 20c (mouse)1158468817192468938Mouse
1301191Stia1_mserum transfer induced arthritis 1 (mouse)Not determined1141233173175233272Mouse
1300934Cfbw1_mcystic fibrosis body weight 1 (mouse)Not determined1145145207179145325Mouse
1301189Lmr8_mleishmaniasis resistance 8 (mouse)Not determined1156602037189303617Mouse
1558720Bpq8_mblood pressure QTL 8 (mouse)Not determined1143284665177284803Mouse
10766456Sle21_msystematic lupus erythematosus susceptibility 21 (mouse)1155831765189831892Mouse
1301710Bmd5_mbone mineral density 5 (mouse)Not determined1139602037173602216Mouse
27095935Ulnl5_mulna length 5, 10 week (mouse)1128727737181327565Mouse
1301232Hcs7_mhepatocarcinogenesis susceptibility 7 (mouse)Not determined1156602037168186402Mouse
10054271Nba9_mNew Zealand Black autoimmunity 9 (mouse)Not determined1155525623189527533Mouse
10054270Nba10_mNew Zealand Black autoimmunity 10 (mouse)Not determined1152794822186438620Mouse
1357567Nidd3k_mNidd3 on KK-A<y> (mouse)Not determined7147125258169038913Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
1300732Melm2_mmelanoma modifier 2 (mouse)Not determined1157456299191456436Mouse
1301216Cbm1_mcerebellum weight 1 (mouse)Not determined1157456299191456436Mouse
27095915Scvln13_msacral vertebrae length 2, 16 week (mouse)1117527730179827565Mouse
11533913Rd6m1_mretinal degeneration 6 modifier 1 (mouse)1141233173175233272Mouse
26884448Sklq1_mskull length QTL 1, 5 week (mouse)175976637181327565Mouse
1300969Sluc5_msusceptibility to lung cancer 5 (mouse)Not determined1151186243185186402Mouse

Markers in Region
AA139417  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1H2UniSTS
cM MapUN UniSTS
cM Map1 UniSTS
Aldh9a1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1H2UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001402830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001402839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001402840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001402844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001402845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001402846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001405095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_019993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB296386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC113970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF170919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK010526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK132336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK149589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC003297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000028004   ⟹   ENSMUSP00000028004
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1167,177,560 - 167,196,101 (+)Ensembl
GRCm38.p6 Ensembl1167,349,991 - 167,368,532 (+)Ensembl
Ensembl Acc Id: ENSMUST00000191715
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1167,191,735 - 167,195,216 (+)Ensembl
GRCm38.p6 Ensembl1167,364,166 - 167,367,647 (+)Ensembl
Ensembl Acc Id: ENSMUST00000193091
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1167,177,881 - 167,183,459 (+)Ensembl
GRCm38.p6 Ensembl1167,350,312 - 167,355,890 (+)Ensembl
Ensembl Acc Id: ENSMUST00000194843
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1167,177,805 - 167,182,057 (+)Ensembl
GRCm38.p6 Ensembl1167,350,236 - 167,354,488 (+)Ensembl
RefSeq Acc Id: NM_001402830   ⟹   NP_001389759
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391167,177,560 - 167,196,100 (+)NCBI
RefSeq Acc Id: NM_001402839   ⟹   NP_001389768
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391167,177,560 - 167,196,100 (+)NCBI
RefSeq Acc Id: NM_001402840   ⟹   NP_001389769
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391167,177,560 - 167,196,100 (+)NCBI
RefSeq Acc Id: NM_001402844   ⟹   NP_001389773
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391167,177,560 - 167,196,100 (+)NCBI
RefSeq Acc Id: NM_001402845   ⟹   NP_001389774
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391167,177,560 - 167,196,100 (+)NCBI
RefSeq Acc Id: NM_001402846   ⟹   NP_001389775
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391167,177,560 - 167,196,100 (+)NCBI
RefSeq Acc Id: NM_001405095   ⟹   NP_001392024
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391167,177,560 - 167,196,100 (+)NCBI
RefSeq Acc Id: NM_019993   ⟹   NP_064377
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391167,177,560 - 167,196,099 (+)NCBI
GRCm381167,349,991 - 167,368,530 (+)ENTREZGENE
MGSCv371169,280,122 - 169,298,661 (+)RGD
Celera1169,767,504 - 169,786,077 (+)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_064377   ⟸   NM_019993
- Peptide Label: isoform 1
- UniProtKB: Q3V1N7 (UniProtKB/TrEMBL),   Q3TG52 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000028004   ⟸   ENSMUST00000028004
RefSeq Acc Id: NP_001389773   ⟸   NM_001402844
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001389774   ⟸   NM_001402845
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001389768   ⟸   NM_001402839
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001392024   ⟸   NM_001405095
- Peptide Label: isoform 6
RefSeq Acc Id: NP_001389759   ⟸   NM_001402830
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001389769   ⟸   NM_001402840
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001389775   ⟸   NM_001402846
- Peptide Label: isoform 5
- UniProtKB: Q3TG52 (UniProtKB/TrEMBL),   Q3V1N7 (UniProtKB/TrEMBL)
Protein Domains
Aldehyde dehydrogenase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9JLJ2-F1-model_v2 AlphaFold Q9JLJ2 1-494 view protein structure

Promoters
RGD ID:6875582
Promoter ID:EPDNEW_M1242
Type:initiation region
Name:Aldh9a1_2
Description:Mus musculus aldehyde dehydrogenase 9, subfamily A1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M1243  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381167,350,007 - 167,350,067EPDNEW
RGD ID:6875584
Promoter ID:EPDNEW_M1243
Type:initiation region
Name:Aldh9a1_1
Description:Mus musculus aldehyde dehydrogenase 9, subfamily A1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M1242  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381167,350,225 - 167,350,285EPDNEW
RGD ID:6817345
Promoter ID:MM_KWN:2752
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_019993
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361169,279,929 - 169,280,429 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1861622 AgrOrtholog
Ensembl Genes ENSMUSG00000026687 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000028004 ENTREZGENE
  ENSMUST00000028004.11 UniProtKB/Swiss-Prot
InterPro Ald_DH/histidinol_DH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ald_DH_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ald_DH_CS_CYS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ald_DH_CS_GLU UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ald_DH_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Aldehyde_DH_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:56752 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1861622 ENTREZGENE
NCBI Gene 56752 ENTREZGENE
PANTHER 4-TRIMETHYLAMINOBUTYRALDEHYDE DEHYDROGENASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ALDEHYDE DEHYDROGENASE-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Aldedh UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Aldh9a1 PhenoGen
PROSITE ALDEHYDE_DEHYDR_CYS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ALDEHYDE_DEHYDR_GLU UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF53720 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A7VL18_MOUSE UniProtKB/TrEMBL
  AL9A1_MOUSE UniProtKB/Swiss-Prot
  Q3TG52 ENTREZGENE, UniProtKB/TrEMBL
  Q3THE7_MOUSE UniProtKB/TrEMBL
  Q3TMT4_MOUSE UniProtKB/TrEMBL
  Q3UDG0_MOUSE UniProtKB/TrEMBL
  Q3V1N7 ENTREZGENE, UniProtKB/TrEMBL
  Q9CRH9_MOUSE UniProtKB/TrEMBL
  Q9JLJ2 ENTREZGENE
UniProt Secondary Q3U367 UniProtKB/Swiss-Prot