Syt8 (synaptotagmin VIII) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Syt8 (synaptotagmin VIII) Mus musculus
Analyze
Symbol: Syt8
Name: synaptotagmin VIII
RGD ID: 68586
MGI Page MGI
Description: Enables calcium-dependent protein binding activity. Involved in acrosome reaction. Predicted to be located in cytoplasmic vesicle and membrane. Predicted to be active in axon; plasma membrane; and secretory vesicle. Is expressed in bladder. Orthologous to human SYT8 (synaptotagmin 8).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: MGC124104; MGC124105; synaptotagmin 8; synaptotagmin-8; sytVIII
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397141,988,195 - 141,994,136 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7141,988,587 - 141,994,133 (+)EnsemblGRCm39 Ensembl
GRCm387142,434,850 - 142,440,396 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7142,434,850 - 142,440,396 (+)EnsemblGRCm38mm10GRCm38
MGSCv377149,620,882 - 149,626,303 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367142,244,367 - 142,249,788 (+)NCBIMGSCv36mm8
Celera7142,190,658 - 142,196,079 (+)NCBICelera
Cytogenetic Map7F5NCBI
cM Map787.93NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Conserved N-terminal cysteine motif is essential for homo- and heterodimer formation of synaptotagmins III, V, VI, and X. Fukuda M, etal., J Biol Chem 1999 Oct 29;274(44):31421-7.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. Ca(2+)-dependent and -independent activities of neural and non-neural synaptotagmins. Li C, etal., Nature 1995 Jun 15;375(6532):594-9.
4. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
5. MGDs mouse GO annotations MGD data from the GO Consortium
6. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9575177   PMID:10349636   PMID:10734137   PMID:11011146   PMID:11042159   PMID:11076861   PMID:11751263   PMID:12477932   PMID:15774481   PMID:16141072   PMID:16141073   PMID:16386321  
PMID:21267068   PMID:21677750   PMID:21873635  


Genomics

Comparative Map Data
Syt8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397141,988,195 - 141,994,136 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7141,988,587 - 141,994,133 (+)EnsemblGRCm39 Ensembl
GRCm387142,434,850 - 142,440,396 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7142,434,850 - 142,440,396 (+)EnsemblGRCm38mm10GRCm38
MGSCv377149,620,882 - 149,626,303 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367142,244,367 - 142,249,788 (+)NCBIMGSCv36mm8
Celera7142,190,658 - 142,196,079 (+)NCBICelera
Cytogenetic Map7F5NCBI
cM Map787.93NCBI
SYT8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38111,831,784 - 1,837,521 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl111,828,307 - 1,837,521 (+)EnsemblGRCh38hg38GRCh38
GRCh37111,855,657 - 1,858,751 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36111,812,250 - 1,815,326 (+)NCBINCBI36Build 36hg18NCBI36
Build 34111,812,281 - 1,815,326NCBI
Celera111,893,432 - 1,896,508 (+)NCBICelera
Cytogenetic Map11p15.5NCBI
HuRef111,646,573 - 1,649,649 (+)NCBIHuRef
CHM1_1111,854,481 - 1,857,557 (+)NCBICHM1_1
T2T-CHM13v2.0111,917,579 - 1,923,320 (+)NCBIT2T-CHM13v2.0
Syt8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81207,017,602 - 207,023,076 (+)NCBIGRCr8
mRatBN7.21197,588,126 - 197,593,598 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1197,590,149 - 197,593,504 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1205,960,833 - 205,966,301 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01213,046,669 - 213,052,141 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01205,720,822 - 205,726,294 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01215,605,408 - 215,607,602 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1215,605,404 - 215,607,696 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01222,500,775 - 222,502,969 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41202,683,924 - 202,686,122 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11202,843,643 - 202,845,838 (+)NCBI
Celera1195,210,125 - 195,212,319 (+)NCBICelera
Cytogenetic Map1q41NCBI
Syt8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542213,642,780 - 13,648,262 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542213,642,933 - 13,648,351 (+)NCBIChiLan1.0ChiLan1.0
SYT8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v294,256,510 - 4,258,846 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1113,463,692 - 3,470,264 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0111,867,572 - 1,874,115 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1111,899,325 - 1,905,764 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl111,902,554 - 1,910,084 (+)Ensemblpanpan1.1panPan2
SYT8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11846,069,380 - 46,075,477 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1846,072,495 - 46,075,480 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1844,676,051 - 44,685,670 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01846,752,813 - 46,756,815 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1846,753,883 - 46,756,729 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11846,194,603 - 46,204,217 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01845,774,910 - 45,784,524 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01846,521,011 - 46,530,630 (+)NCBIUU_Cfam_GSD_1.0
Syt8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049471,476,094 - 1,483,357 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936816732,565 - 737,309 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936816732,948 - 737,371 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SYT8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl21,247,878 - 1,250,437 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.121,245,988 - 1,250,422 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SYT8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111,646,125 - 1,657,627 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11,654,499 - 1,657,261 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603898,850,358 - 98,853,662 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Syt8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476714,731,508 - 14,733,893 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476714,673,307 - 14,733,984 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Syt8
85 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1470
Count of miRNA genes:529
Interacting mature miRNAs:650
Transcripts:ENSMUST00000097939, ENSMUST00000105976, ENSMUST00000105977, ENSMUST00000118276, ENSMUST00000122393, ENSMUST00000124963, ENSMUST00000128481, ENSMUST00000145964, ENSMUST00000148896, ENSMUST00000150192
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753249748143153737Mouse
27095933Ulnl3_mulna length 3, 5 week (mouse)773149748143153737Mouse
14700684Civq1_mcerebral infarct volume QTL 1 (mouse)7109707335143707335Mouse
14700687Civq5_mcerebral infarct volume QTL 5 (mouse)7109707335143707335Mouse
14700688Civq6_mcerebral infarct volume QTL 6 (mouse)7109707335143707335Mouse
11059562Lmr21b_mleishmaniasis resistance 21b (mouse)7110967235144967336Mouse
10402499Lmr21_mleishmaniasis resistance 21 (mouse)Not determined7110967235144967336Mouse
1302032Alcp12_malcohol preference locus 12 (mouse)Not determined7111166122144995196Mouse
1301898Alcp14_malcohol preference locus 14 (mouse)Not determined7111166122144995196Mouse
1300670Sluc19_msusceptibility to lung cancer 19 (mouse)Not determined7111166122144995196Mouse
4142444Femwf5_mfemur work to failure 5 (mouse)Not determined112552248144995196Mouse
1300747Skts2_mskin tumor susceptibility 2 (mouse)Not determined7112922733144995196Mouse
1300677Bmd9_mbone mineral density 9 (mouse)Not determined7116634089144995196Mouse
1357711Adbg1_madult body growth 1 (mouse)Not determined7118693381144398314Mouse
1301773Stheal7_msoft tissue heal 7 (mouse)Not determined7119132573144995196Mouse
1301590Pbwg3_mpostnatal body weight growth 3 (mouse)Not determined7127311241144995196Mouse
1300566Sluc8_msusceptibility to lung cancer 8 (mouse)Not determined7127398151144995196Mouse
14746988Manh63_mmandible shape 63 (mouse)7127735437144995196Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001285857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001285858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001285861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_018802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_153437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006508632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006508633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006508635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006508637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006508638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006508639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011242014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011242015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011242016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004934155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA023701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB026805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK075832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL603651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC100747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC100748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC103602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC103665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U20107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U20109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000097939   ⟹   ENSMUSP00000095552
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7141,988,738 - 141,994,065 (+)Ensembl
GRCm38.p6 Ensembl7142,435,001 - 142,440,328 (+)Ensembl
RefSeq Acc Id: ENSMUST00000105976   ⟹   ENSMUSP00000101596
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7141,988,738 - 141,994,065 (+)Ensembl
GRCm38.p6 Ensembl7142,435,001 - 142,440,328 (+)Ensembl
RefSeq Acc Id: ENSMUST00000105977   ⟹   ENSMUSP00000101597
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7141,991,869 - 141,992,279 (+)Ensembl
GRCm38.p6 Ensembl7142,438,132 - 142,438,542 (+)Ensembl
RefSeq Acc Id: ENSMUST00000118276   ⟹   ENSMUSP00000113545
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7141,988,714 - 141,994,133 (+)Ensembl
GRCm38.p6 Ensembl7142,434,977 - 142,440,396 (+)Ensembl
RefSeq Acc Id: ENSMUST00000122393   ⟹   ENSMUSP00000112689
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7141,990,571 - 141,994,042 (+)Ensembl
GRCm38.p6 Ensembl7142,436,834 - 142,440,305 (+)Ensembl
RefSeq Acc Id: ENSMUST00000124963
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7141,992,752 - 141,994,049 (+)Ensembl
GRCm38.p6 Ensembl7142,439,015 - 142,440,312 (+)Ensembl
RefSeq Acc Id: ENSMUST00000128481
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7141,988,683 - 141,992,705 (+)Ensembl
GRCm38.p6 Ensembl7142,434,946 - 142,438,968 (+)Ensembl
RefSeq Acc Id: ENSMUST00000145964
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7141,992,158 - 141,993,721 (+)Ensembl
GRCm38.p6 Ensembl7142,438,421 - 142,439,984 (+)Ensembl
RefSeq Acc Id: ENSMUST00000148896
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7141,988,738 - 141,994,065 (+)Ensembl
GRCm38.p6 Ensembl7142,435,001 - 142,440,328 (+)Ensembl
RefSeq Acc Id: ENSMUST00000150192
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7141,988,587 - 141,993,612 (+)Ensembl
GRCm38.p6 Ensembl7142,434,850 - 142,439,875 (+)Ensembl
RefSeq Acc Id: ENSMUST00000210746   ⟹   ENSMUSP00000147572
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7141,993,097 - 141,994,132 (+)Ensembl
GRCm38.p6 Ensembl7142,439,360 - 142,440,395 (+)Ensembl
RefSeq Acc Id: NM_001285857   ⟹   NP_001272786
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397141,988,714 - 141,994,133 (+)NCBI
GRCm387142,434,977 - 142,440,396 (+)NCBI
Celera7142,190,658 - 142,196,077 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001285858   ⟹   NP_001272787
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397141,988,714 - 141,994,133 (+)NCBI
GRCm387142,434,977 - 142,440,396 (+)NCBI
Celera7142,190,658 - 142,196,077 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001285861   ⟹   NP_001272790
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397141,990,571 - 141,994,133 (+)NCBI
GRCm387142,436,834 - 142,440,396 (+)NCBI
Celera7142,190,658 - 142,196,077 (+)NCBI
Sequence:
RefSeq Acc Id: NM_018802   ⟹   NP_061272
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397141,988,714 - 141,994,133 (+)NCBI
GRCm387142,434,977 - 142,440,396 (+)NCBI
MGSCv377149,620,882 - 149,626,303 (+)RGD
Celera7142,190,658 - 142,196,077 (+)NCBI
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_153437
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397141,988,587 - 141,994,133 (+)NCBI
GRCm387142,434,850 - 142,440,396 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006508632   ⟹   XP_006508695
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397141,988,451 - 141,994,136 (+)NCBI
GRCm387142,435,002 - 142,440,395 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006508633   ⟹   XP_006508696
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397141,988,451 - 141,994,136 (+)NCBI
GRCm387142,434,993 - 142,440,395 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006508635   ⟹   XP_006508698
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397141,988,456 - 141,994,136 (+)NCBI
GRCm387142,435,004 - 142,440,395 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006508637   ⟹   XP_006508700
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397141,988,456 - 141,994,136 (+)NCBI
GRCm387142,434,993 - 142,440,395 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006508638   ⟹   XP_006508701
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397141,988,453 - 141,994,136 (+)NCBI
GRCm387142,435,007 - 142,440,395 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006508639   ⟹   XP_006508702
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397141,988,453 - 141,994,136 (+)NCBI
GRCm387142,434,993 - 142,440,395 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011242014   ⟹   XP_011240316
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397141,988,452 - 141,994,136 (+)NCBI
GRCm387142,435,002 - 142,440,395 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011242015   ⟹   XP_011240317
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397141,988,456 - 141,994,136 (+)NCBI
GRCm387142,435,002 - 142,440,395 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011242016   ⟹   XP_011240318
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397141,988,459 - 141,994,136 (+)NCBI
GRCm387142,435,002 - 142,440,395 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036153261   ⟹   XP_036009154
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397141,989,868 - 141,994,136 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036153262   ⟹   XP_036009155
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397141,988,457 - 141,994,136 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036153263   ⟹   XP_036009156
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397141,988,195 - 141,993,490 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036153264   ⟹   XP_036009157
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397141,988,196 - 141,993,490 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036153265   ⟹   XP_036009158
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397141,988,201 - 141,993,628 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004934155
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397141,988,204 - 141,994,136 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001272786 (Get FASTA)   NCBI Sequence Viewer  
  NP_001272787 (Get FASTA)   NCBI Sequence Viewer  
  NP_001272790 (Get FASTA)   NCBI Sequence Viewer  
  NP_061272 (Get FASTA)   NCBI Sequence Viewer  
  XP_006508695 (Get FASTA)   NCBI Sequence Viewer  
  XP_006508696 (Get FASTA)   NCBI Sequence Viewer  
  XP_006508698 (Get FASTA)   NCBI Sequence Viewer  
  XP_006508700 (Get FASTA)   NCBI Sequence Viewer  
  XP_006508701 (Get FASTA)   NCBI Sequence Viewer  
  XP_006508702 (Get FASTA)   NCBI Sequence Viewer  
  XP_011240316 (Get FASTA)   NCBI Sequence Viewer  
  XP_011240317 (Get FASTA)   NCBI Sequence Viewer  
  XP_011240318 (Get FASTA)   NCBI Sequence Viewer  
  XP_036009154 (Get FASTA)   NCBI Sequence Viewer  
  XP_036009155 (Get FASTA)   NCBI Sequence Viewer  
  XP_036009156 (Get FASTA)   NCBI Sequence Viewer  
  XP_036009157 (Get FASTA)   NCBI Sequence Viewer  
  XP_036009158 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA87723 (Get FASTA)   NCBI Sequence Viewer  
  AAA87727 (Get FASTA)   NCBI Sequence Viewer  
  AAI00748 (Get FASTA)   NCBI Sequence Viewer  
  AAI00749 (Get FASTA)   NCBI Sequence Viewer  
  AAI03603 (Get FASTA)   NCBI Sequence Viewer  
  AAI03666 (Get FASTA)   NCBI Sequence Viewer  
  BAA85777 (Get FASTA)   NCBI Sequence Viewer  
  BAC35993 (Get FASTA)   NCBI Sequence Viewer  
  EDL18145 (Get FASTA)   NCBI Sequence Viewer  
  EDL18146 (Get FASTA)   NCBI Sequence Viewer  
  EDL18147 (Get FASTA)   NCBI Sequence Viewer  
  EDL18148 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000095552
  ENSMUSP00000095552.3
  ENSMUSP00000101596
  ENSMUSP00000101596.2
  ENSMUSP00000101597.3
  ENSMUSP00000112689
  ENSMUSP00000112689.2
  ENSMUSP00000113545
  ENSMUSP00000113545.2
  ENSMUSP00000147572.2
GenBank Protein Q9R0N6 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_061272   ⟸   NM_018802
- Peptide Label: isoform a
- UniProtKB: Q496Q3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001272787   ⟸   NM_001285858
- Peptide Label: isoform b
- UniProtKB: F2Z3W8 (UniProtKB/TrEMBL),   Q496Q3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001272786   ⟸   NM_001285857
- Peptide Label: isoform b
- UniProtKB: F2Z3W8 (UniProtKB/TrEMBL),   Q496Q3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001272790   ⟸   NM_001285861
- Peptide Label: isoform c
- UniProtKB: Q64366 (UniProtKB/Swiss-Prot),   A9JAL0 (UniProtKB/Swiss-Prot),   Q8C6E7 (UniProtKB/Swiss-Prot),   Q9R0N6 (UniProtKB/Swiss-Prot),   Q496Q3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006508695   ⟸   XM_006508632
- Peptide Label: isoform X1
- UniProtKB: Q496Q3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006508696   ⟸   XM_006508633
- Peptide Label: isoform X1
- UniProtKB: Q496Q3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006508701   ⟸   XM_006508638
- Peptide Label: isoform X3
- UniProtKB: Q496Q3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006508702   ⟸   XM_006508639
- Peptide Label: isoform X3
- UniProtKB: Q496Q3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006508698   ⟸   XM_006508635
- Peptide Label: isoform X3
- UniProtKB: Q496Q3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006508700   ⟸   XM_006508637
- Peptide Label: isoform X3
- UniProtKB: Q496Q3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011240316   ⟸   XM_011242014
- Peptide Label: isoform X2
- UniProtKB: Q496Q3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011240317   ⟸   XM_011242015
- Peptide Label: isoform X3
- UniProtKB: Q496Q3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011240318   ⟸   XM_011242016
- Peptide Label: isoform X4
- UniProtKB: Q64366 (UniProtKB/Swiss-Prot),   A9JAL0 (UniProtKB/Swiss-Prot),   Q8C6E7 (UniProtKB/Swiss-Prot),   Q9R0N6 (UniProtKB/Swiss-Prot),   Q496Q3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000101596   ⟸   ENSMUST00000105976
RefSeq Acc Id: ENSMUSP00000101597   ⟸   ENSMUST00000105977
RefSeq Acc Id: ENSMUSP00000113545   ⟸   ENSMUST00000118276
RefSeq Acc Id: ENSMUSP00000147572   ⟸   ENSMUST00000210746
RefSeq Acc Id: ENSMUSP00000095552   ⟸   ENSMUST00000097939
RefSeq Acc Id: ENSMUSP00000112689   ⟸   ENSMUST00000122393
RefSeq Acc Id: XP_036009156   ⟸   XM_036153263
- Peptide Label: isoform X6
RefSeq Acc Id: XP_036009157   ⟸   XM_036153264
- Peptide Label: isoform X7
RefSeq Acc Id: XP_036009158   ⟸   XM_036153265
- Peptide Label: isoform X8
RefSeq Acc Id: XP_036009155   ⟸   XM_036153262
- Peptide Label: isoform X5
- UniProtKB: Q496Q4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036009154   ⟸   XM_036153261
- Peptide Label: isoform X1
- UniProtKB: Q496Q3 (UniProtKB/TrEMBL)
Protein Domains
C2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9R0N6-F1-model_v2 AlphaFold Q9R0N6 1-395 view protein structure

Promoters
RGD ID:8666191
Promoter ID:EPDNEW_M11127
Type:initiation region
Name:Syt8_1
Description:Mus musculus synaptotagmin VIII , transcript variant 4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm387142,434,944 - 142,435,004EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1859867 AgrOrtholog
Ensembl Genes ENSMUSG00000031098 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000097939 ENTREZGENE
  ENSMUST00000097939.9 UniProtKB/TrEMBL
  ENSMUST00000105976 ENTREZGENE
  ENSMUST00000105976.8 UniProtKB/TrEMBL
  ENSMUST00000105977.3 UniProtKB/TrEMBL
  ENSMUST00000118276 ENTREZGENE
  ENSMUST00000118276.8 UniProtKB/Swiss-Prot
  ENSMUST00000122393 ENTREZGENE
  ENSMUST00000122393.2 UniProtKB/Swiss-Prot
  ENSMUST00000210746.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.150 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro C2_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Synaptotagmin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:55925 UniProtKB/Swiss-Prot
MGD MGI:1859867 ENTREZGENE
NCBI Gene 55925 ENTREZGENE
PANTHER PTHR10024:SF249 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SYNAPTOTAGMIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PF00168 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Syt8 PhenoGen
PRINTS SYNAPTOTAGMN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE PS50004 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SM00239 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF49562 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1B0GRL5_MOUSE UniProtKB/TrEMBL
  A9JAL0 ENTREZGENE
  E9Q6P7_MOUSE UniProtKB/TrEMBL
  F2Z3W8 ENTREZGENE, UniProtKB/TrEMBL
  Q496Q3 ENTREZGENE, UniProtKB/TrEMBL
  Q496Q4 ENTREZGENE, UniProtKB/TrEMBL
  Q64366 ENTREZGENE
  Q8C6E7 ENTREZGENE
  Q9R0N6 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary A9JAL0 UniProtKB/Swiss-Prot
  Q64366 UniProtKB/Swiss-Prot
  Q8C6E7 UniProtKB/Swiss-Prot