Rab11b (RAB11B, member RAS oncogene family) - Rat Genome Database

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Gene: Rab11b (RAB11B, member RAS oncogene family) Mus musculus
Analyze
Symbol: Rab11b
Name: RAB11B, member RAS oncogene family
RGD ID: 68530
MGI Page MGI
Description: Enables GTP binding activity and GTPase activity. Involved in several processes, including melanosome transport; protein transport; and regulation of endocytic recycling. Located in recycling endosome membrane. Is expressed in several structures, including hemolymphoid system gland; limb; liver; metanephros; and testis. Orthologous to human RAB11B (RAB11B, member RAS oncogene family).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: A730055L17Rik; ras-related protein Rab-11B
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm9110   Rab11b-ps1   Rab11b-ps2  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391733,961,458 - 33,979,460 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1733,961,458 - 33,979,504 (-)EnsemblGRCm39 Ensembl
GRCm381733,742,484 - 33,760,486 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1733,742,484 - 33,760,530 (-)EnsemblGRCm38mm10GRCm38
MGSCv371733,879,429 - 33,897,431 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361733,353,479 - 33,367,177 (-)NCBIMGSCv36mm8
Celera1736,499,813 - 36,517,815 (-)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1717.98NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Novel small GTPase M-Ras participates in reorganization of actin cytoskeleton. Matsumoto K, etal., Oncogene 1997 Nov 13;15(20):2409-17.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Intracellular membrane trafficking pathways in bone-resorbing osteoclasts revealed by cloning and subcellular localization studies of small GTP-binding rab proteins. Zhao H, etal., Biochem Biophys Res Commun 2002 May 10;293(3):1060-5.
Additional References at PubMed
PMID:7835882   PMID:8001972   PMID:8889548   PMID:10349636   PMID:10708602   PMID:10922068   PMID:10942597   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11773082   PMID:11856727  
PMID:12466851   PMID:12477932   PMID:12578829   PMID:14610273   PMID:15112104   PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16783635   PMID:16923123   PMID:17967808  
PMID:18614015   PMID:18656450   PMID:18845944   PMID:19335615   PMID:19423573   PMID:20059953   PMID:21248079   PMID:21267068   PMID:21291502   PMID:21743464   PMID:21873635   PMID:22129970  
PMID:22854957   PMID:22935415   PMID:24141907   PMID:24457600   PMID:26618355   PMID:27542690   PMID:28482867   PMID:29222402   PMID:29330353   PMID:29514919   PMID:30335684   PMID:30550785  
PMID:30590051   PMID:31239271   PMID:31300538   PMID:31388001   PMID:32325033   PMID:32554809   PMID:33302495   PMID:33500317   PMID:35781329   PMID:36398878   PMID:36719382   PMID:37172642  
PMID:37225424   PMID:37424454   PMID:37839992  


Genomics

Comparative Map Data
Rab11b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391733,961,458 - 33,979,460 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1733,961,458 - 33,979,504 (-)EnsemblGRCm39 Ensembl
GRCm381733,742,484 - 33,760,486 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1733,742,484 - 33,760,530 (-)EnsemblGRCm38mm10GRCm38
MGSCv371733,879,429 - 33,897,431 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361733,353,479 - 33,367,177 (-)NCBIMGSCv36mm8
Celera1736,499,813 - 36,517,815 (-)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1717.98NCBI
RAB11B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38198,390,360 - 8,404,434 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl198,389,981 - 8,404,434 (+)EnsemblGRCh38hg38GRCh38
GRCh37198,455,244 - 8,469,318 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36198,361,296 - 8,374,479 (+)NCBINCBI36Build 36hg18NCBI36
Build 34198,361,295 - 8,374,479NCBI
Celera198,311,860 - 8,325,986 (+)NCBICelera
Cytogenetic Map19p13.2NCBI
HuRef198,108,703 - 8,123,515 (+)NCBIHuRef
CHM1_1198,454,661 - 8,468,772 (+)NCBICHM1_1
T2T-CHM13v2.0198,376,828 - 8,390,915 (+)NCBIT2T-CHM13v2.0
Rab11b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8715,223,613 - 15,236,754 (-)NCBIGRCr8
mRatBN7.2714,521,448 - 14,534,589 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl714,521,368 - 14,534,593 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx717,530,010 - 17,543,161 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0719,395,243 - 19,408,385 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0717,275,599 - 17,288,744 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0718,598,991 - 18,612,132 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl718,598,880 - 18,612,147 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0718,776,591 - 18,789,732 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4716,232,840 - 16,246,007 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1716,232,842 - 16,246,007 (-)NCBI
Celera713,420,039 - 13,433,194 (-)NCBICelera
Cytogenetic Map7q13NCBI
Rab11b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555631,008,769 - 1,017,315 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555631,008,267 - 1,017,315 (-)NCBIChiLan1.0ChiLan1.0
RAB11B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22013,058,006 - 13,072,108 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11912,174,697 - 12,188,777 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0197,676,095 - 7,690,177 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1198,526,294 - 8,540,147 (+)NCBIpanpan1.1PanPan1.1panPan2
RAB11B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12052,955,949 - 52,966,279 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2052,956,529 - 52,965,383 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2052,757,255 - 52,768,977 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02053,484,088 - 53,495,852 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2053,484,656 - 53,498,327 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12052,686,120 - 52,697,840 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02053,131,752 - 53,143,468 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02053,363,591 - 53,375,312 (+)NCBIUU_Cfam_GSD_1.0
Rab11b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118212,624,348 - 212,636,058 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365885,198,394 - 5,214,603 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365885,198,659 - 5,210,430 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAB11B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl270,884,462 - 70,896,172 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1270,884,457 - 70,896,169 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2271,251,151 - 71,262,863 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RAB11B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.167,743,130 - 7,757,237 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl67,743,361 - 7,757,305 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607412,504,898 - 12,519,218 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rab11b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248281,165,327 - 1,174,417 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248281,165,877 - 1,174,306 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3826
Count of miRNA genes:895
Interacting mature miRNAs:1213
Transcripts:ENSMUST00000057373, ENSMUST00000172894, ENSMUST00000173860, ENSMUST00000173987, ENSMUST00000174744
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10412276Leci2_mleukocyte endothelial cell interactions 2 (mouse)Not determined17334817537348299Mouse
1300890Bhr3_mbronchial hyperresponsiveness 3 (mouse)Not determined17397489048866091Mouse
4141215Mnic1_mmacronutrient intake, carbohydrate 1 (mouse)Not determined485475245670266Mouse
1300706Alan1_malloantigen response 1 (mouse)Not determined17485475246469702Mouse
1357789Kdnw3_mkidney weight 3 (mouse)Not determined17485475247885665Mouse
4141272Tfv1_mtotal food volume 1 (mouse)Not determined485475265637357Mouse
10043949Pbft7_mpercent body fat 7 (mouse)Not determined17689393640893936Mouse
1301935Skull24_mskull morphology 24 (mouse)Not determined17858491442585149Mouse
1300787Cd8mts5_mCD8 memory T cell subset 5 (mouse)Not determined17858491442585149Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined171008134086996400Mouse
1302028Asbb3_mautoimmune susceptibility in C57BL/6J and BALB/c 3 (mouse)Not determined171087811944878219Mouse
4142342Lfnq4_mlung function QTL 4 (mouse)Not determined1120648439364059Mouse
4141067Hbnr2_mHeligmosomoides bakeri nematode resistance 2 (mouse)Not determined1188597145886119Mouse
14747010Mancz14_mmandible centroid size 14 (mouse)171199818445998184Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171228621183361768Mouse
12904946Tammq8_mtibialis anterior muscle mass QTL 8 (mouse)171245178746451787Mouse
13524847Asrq8a_macoustic startle response 8a (mouse)171264696146646961Mouse
11081168Tir7_mtrypanosome infection response 7 (mouse)171412337248123496Mouse
1300995Fembrs4_mfemur breaking strength 4 (mouse)Not determined171506165249061760Mouse
1300914Pcir4_mperiosteal circumference 4 (mouse)Not determined171506165249061760Mouse
1302070Tbbmd7_mtotal body bone mineral density 7 (mouse)Not determined171506165249061760Mouse
1558886Lgth9_mbody length 9 (mouse)Not determined171506165249061760Mouse
1302140Wta4_mweight adult 4 (mouse)Not determined171681972150819843Mouse
1302152Skull25_mskull morphology 25 (mouse)Not determined171681972150819843Mouse
10412083Sm2_msusceptibility to Schistosoma mansoni infection 2 (mouse)Not determined171702994351030078Mouse
13452396Leusq3_mleucocytosis susceptibility QTL 3 (mouse)171746220851462345Mouse
13452399Leusq6_mleucocytosis susceptibility QTL 6 (mouse)171746220851462345Mouse
10412214Sxbq3_mSGC/Knj cross B6 QTL 3 (mouse)Not determined171746220851462345Mouse
1300535Char3_mP. chabaudi malaria resistance QTL 3 (mouse)Not determined171746220851462345Mouse
1301840Ssial4_msusceptibility to sialadenitiss 4 (mouse)Not determined171817541252178214Mouse
1301331Lbw1_mlupus NZB x NZW 1 (mouse)Not determined171841835752420983Mouse
1301056Pas2_mpulmonary adenoma susceptibility 2 (mouse)Not determined171842214152424327Mouse
15039354Nmrs36_mNAFLD-associated magnetic resonance shift 36 (mouse)171914502553145025Mouse
1301454Eae5_msusceptibility to experimental allergic encephalomyelitis 5 (mouse)Not determined172461275058612864Mouse
10412198Sst5_msusceptibility to tuberculosis 5 (mouse)Not determined172507658355712970Mouse
10412196Bbaa28_mB.burgdorferi-associated arthritis 28 (mouse)Not determined172558491443976235Mouse
10412204Bbaa29_mB.burgdorferi-associated arthritis 29 (mouse)Not determined172605118560051352Mouse
1558758Kcal2_mkilocalorie 2 (mouse)Not determined172640101252911704Mouse
1300602Eye2_meye weight 2 (mouse)Not determined172650533741105037Mouse
1302005Loco2_mlocomotor activity 2 (mouse)Not determined172688497260885114Mouse
11075105Modc1_mmodifier of Odc1 (mouse)172771579245622654Mouse
15039348Nmrs37_mNAFLD-associated magnetic resonance shift 37 (mouse)172781520961815209Mouse
10045977Tir9_mtrypanosome infection response 9 (mouse)Not determined172787811943885114Mouse
1300703Uvbi2_mUVB induced immunosuppression 2 (mouse)Not determined172862240662622654Mouse
11038694Pas19_mpulmonary adenoma susceptibility 19 (mouse)172971116434754437Mouse
1300589Myaa2_mmodifier of Yaa 2 (mouse)Not determined173013255564132666Mouse
4141357Mrdq1_mmodifier of retinal degeneration QTL 1 (mouse)Not determined3098790348039703Mouse
4140955Plgr1_mplague resistance locus 1 (mouse)Not determined3103350065033630Mouse
1300692Blmpf1_mbleomycin-induced pulmonary fibrosis 1 (mouse)Not determined173206165237644775Mouse
25394538Skmw84_mskeletal muscle weight 84, TA (mouse)173266042635520036Mouse
26884379Skwq5_mskull length QTL 5, 5 week (mouse)173311897454107028Mouse
1302189Dps3_mdelta power in slow-wave sleep 3 (mouse)Not determined173381972136250180Mouse

Markers in Region
A730055L17Rik  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381733,744,871 - 33,745,258UniSTSGRCm38
MGSCv371733,881,816 - 33,882,203UniSTSGRCm37
Celera1736,502,200 - 36,502,587UniSTS
Cytogenetic Map17B1UniSTS
cM Map17 UniSTS
Rab11b  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38197,398,287 - 7,399,068UniSTSGRCm38
MGSCv37197,472,777 - 7,473,558UniSTSGRCm37
Celera197,170,038 - 7,170,819UniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map19AUniSTS
cM Map1718.3UniSTS
D10Mit157.2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6D1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map18E2UniSTS
Cytogenetic Map4C3UniSTS
Cytogenetic Map7B2UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map14E2.2UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map6C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map17A1UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map8C1UniSTS
Cytogenetic Map18A2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8E2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map18B1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map14C2UniSTS
Cytogenetic Map6A1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map13D2.1UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map17E3UniSTS
Cytogenetic Map11B3UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map6A3UniSTS
Cytogenetic Map5E4-E5UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map13DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map14D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic MapXDUniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map1H2.3UniSTS
Cytogenetic Map7A2UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map15D2UniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map16B2UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map1C4UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9F3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map9A4UniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map1A5UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map6G1UniSTS
Cytogenetic MapXA2UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map9BUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map7F1UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map10A4UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map18A1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map1C2UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map1BUniSTS
Cytogenetic Map17A3.1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map4B1UniSTS
Cytogenetic Map15A2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic Map4A3UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map8A1UniSTS
Cytogenetic Map8A1.1UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map10B1UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map10A1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map4A1UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map17CUniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map5E3UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map14C1UniSTS
Cytogenetic Map14E5UniSTS
Cytogenetic Map10CUniSTS
Cytogenetic Map18B2UniSTS
Cytogenetic Map2F1UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map17A2UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17B2UniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map13C3UniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map13C1UniSTS
Cytogenetic Map9E3.1UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXE3UniSTS
Cytogenetic Map4C4UniSTS
Cytogenetic Map3E3UniSTS
Cytogenetic Map11A4UniSTS
Cytogenetic Map4C5UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map7E1UniSTS
Cytogenetic Map5D-E1UniSTS
Cytogenetic Map5B3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map5A2UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map17E4UniSTS
Cytogenetic Map1G2UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map4D2.1UniSTS
Cytogenetic Map4A5UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map1E3-E4UniSTS
Cytogenetic Map9F1-F3UniSTS
Cytogenetic Map1C1.1UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map12A2UniSTS
Cytogenetic Map17A3-BUniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map14A3UniSTS
Cytogenetic Map5G1.1UniSTS
Cytogenetic MapXF2-F4UniSTS
Cytogenetic Map7D2UniSTS
Cytogenetic Map2F3UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map9F1-F2UniSTS
Cytogenetic Map13A3.2UniSTS
Cytogenetic Map10A2UniSTS
Cytogenetic Map1C1UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map12D3UniSTS
Cytogenetic Map1A3-A5UniSTS
Cytogenetic Map2A2UniSTS
Cytogenetic Map3A1UniSTS
Cytogenetic MapXA3.3UniSTS
Cytogenetic Map16A-B1UniSTS
Cytogenetic Map1D2.3UniSTS
Cytogenetic Map6B2.3UniSTS
Cytogenetic Map2G3UniSTS
Cytogenetic MapXA2-A3.1UniSTS
Cytogenetic Map9A5.3UniSTS
Cytogenetic Map14A2-BUniSTS
Cytogenetic Map8E1-E2UniSTS
Cytogenetic Map8A3UniSTS
Cytogenetic Map1G3-H1UniSTS
Cytogenetic Map8B3-C1UniSTS
Cytogenetic Map19C1UniSTS
Cytogenetic Map8C5UniSTS
Cytogenetic Map8A4UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map14E4UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic MapXF5UniSTS
cM Map1040.0UniSTS
Whitehead Genetic1033.9UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_008997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006523887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB232606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF110520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF528162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK043096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK134125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK148022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK148106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203890 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC054753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC085270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC157916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM935109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU705914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY275360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CAAA01015888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CAAA01200882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT030732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU405655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU463309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KJ650201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L26528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000057373   ⟹   ENSMUSP00000110021
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1733,961,458 - 33,979,504 (-)Ensembl
GRCm38.p6 Ensembl1733,742,484 - 33,760,530 (-)Ensembl
RefSeq Acc Id: ENSMUST00000172894   ⟹   ENSMUSP00000134544
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1733,965,807 - 33,968,819 (-)Ensembl
GRCm38.p6 Ensembl1733,746,833 - 33,749,845 (-)Ensembl
RefSeq Acc Id: ENSMUST00000173860   ⟹   ENSMUSP00000134448
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1733,965,724 - 33,979,280 (-)Ensembl
GRCm38.p6 Ensembl1733,746,750 - 33,760,306 (-)Ensembl
RefSeq Acc Id: ENSMUST00000173987   ⟹   ENSMUSP00000133921
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1733,966,388 - 33,979,254 (-)Ensembl
GRCm38.p6 Ensembl1733,747,414 - 33,760,280 (-)Ensembl
RefSeq Acc Id: ENSMUST00000174744
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1733,967,932 - 33,979,458 (-)Ensembl
GRCm38.p6 Ensembl1733,748,958 - 33,760,484 (-)Ensembl
RefSeq Acc Id: ENSMUST00000235046
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1733,961,458 - 33,979,037 (-)Ensembl
GRCm38.p6 Ensembl1733,742,484 - 33,760,063 (-)Ensembl
RefSeq Acc Id: NM_008997   ⟹   NP_033023
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391733,961,458 - 33,979,460 (-)NCBI
GRCm381733,742,484 - 33,760,486 (-)ENTREZGENE
MGSCv371733,879,429 - 33,897,431 (-)RGD
Celera1736,499,813 - 36,517,815 (-)RGD
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006523887   ⟹   XP_006523950
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391733,965,571 - 33,979,320 (-)NCBI
GRCm381733,746,597 - 33,760,341 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030249599   ⟹   XP_030105459
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391733,965,571 - 33,979,364 (-)NCBI
GRCm381733,746,597 - 33,760,340 (-)NCBI
Sequence:
RefSeq Acc Id: NP_033023   ⟸   NM_008997
- UniProtKB: P46638 (UniProtKB/Swiss-Prot),   Q78ZJ8 (UniProtKB/TrEMBL),   G3UZD3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006523950   ⟸   XM_006523887
- Peptide Label: isoform X2
- UniProtKB: G3UZD3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030105459   ⟸   XM_030249599
- Peptide Label: isoform X1
RefSeq Acc Id: ENSMUSP00000134544   ⟸   ENSMUST00000172894
RefSeq Acc Id: ENSMUSP00000134448   ⟸   ENSMUST00000173860
RefSeq Acc Id: ENSMUSP00000133921   ⟸   ENSMUST00000173987
RefSeq Acc Id: ENSMUSP00000110021   ⟸   ENSMUST00000057373

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P46638-F1-model_v2 AlphaFold P46638 1-218 view protein structure

Promoters
RGD ID:13675588
Promoter ID:EPDNEW_M21943
Type:initiation region
Name:Rab11b_1
Description:Mus musculus RAB11B, member RAS oncogene family , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M21944  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381733,760,331 - 33,760,391EPDNEW
RGD ID:13675590
Promoter ID:EPDNEW_M21944
Type:single initiation site
Name:Rab11b_2
Description:Mus musculus RAB11B, member RAS oncogene family , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M21943  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381733,760,482 - 33,760,542EPDNEW
RGD ID:6828541
Promoter ID:MM_KWN:23120
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Lung,   MEF_B6,   Spleen
Transcripts:NM_008997,   UC008BZN.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361733,897,191 - 33,897,722 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:99425 AgrOrtholog
Ensembl Genes ENSMUSG00000002290
  ENSMUSG00000077450 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000057373 ENTREZGENE
  ENSMUST00000057373.14 UniProtKB/Swiss-Prot
  ENSMUST00000172894.8 UniProtKB/TrEMBL
  ENSMUST00000173860 ENTREZGENE
  ENSMUST00000173860.8 UniProtKB/TrEMBL
  ENSMUST00000173987.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Small_GTP-bd_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Small_GTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:19326 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:99425 ENTREZGENE
NCBI Gene 19326 ENTREZGENE
PANTHER DRAB11-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAS-RELATED PROTEIN RAB-11A UniProtKB/TrEMBL
  RAS-RELATED PROTEIN RAB-11B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ras UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rab11b PhenoGen
PRINTS RASTRNSFRMNG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE RAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
SMART RAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RHO UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A068BFR3_MOUSE UniProtKB/TrEMBL
  G3UY29_MOUSE UniProtKB/TrEMBL
  G3UZD3 ENTREZGENE, UniProtKB/TrEMBL
  G3UZL4_MOUSE UniProtKB/TrEMBL
  P46638 ENTREZGENE
  Q3UZ37_MOUSE UniProtKB/TrEMBL
  Q78ZJ8 ENTREZGENE, UniProtKB/TrEMBL
  RB11B_MOUSE UniProtKB/Swiss-Prot