Pdcd6ip (programmed cell death 6 interacting protein) - Rat Genome Database

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Gene: Pdcd6ip (programmed cell death 6 interacting protein) Mus musculus
Analyze
Symbol: Pdcd6ip
Name: programmed cell death 6 interacting protein
RGD ID: 68506
MGI Page MGI
Description: Enables identical protein binding activity and protein dimerization activity. Involved in several processes, including actomyosin contractile ring assembly; bicellular tight junction assembly; and maintenance of epithelial cell apical/basal polarity. Located in actomyosin; cytosol; and extracellular exosome. Is expressed in hindgut; midgut; rectum; and thymus primordium. Orthologous to human PDCD6IP (programmed cell death 6 interacting protein); PARTICIPATES IN endocytosis pathway; INTERACTS WITH 1,2-dimethylhydrazine; 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: A; AI480591; Aip1; ALG-2-interacting protein 1; ALG-2-interacting protein X; Alg2-interacting protein 1; Alg2-interacting protein X; Alix; AW544830; C76364; E2f1-inducible protein; Eig2; mKIAA1375; programmed cell death 6-interacting protein
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm8932  
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399113,480,812 - 113,537,457 (-)NCBIGRCm39mm39
GRCm39 Ensembl9113,480,812 - 113,537,327 (-)Ensembl
GRCm389113,651,744 - 113,708,279 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9113,651,744 - 113,708,259 (-)EnsemblGRCm38mm10GRCm38
MGSCv379113,560,862 - 113,617,377 (-)NCBIGRCm37mm9NCBIm37
MGSCv369113,503,631 - 113,556,805 (-)NCBImm8
Celera9113,360,961 - 113,417,417 (-)NCBICelera
Cytogenetic Map9F3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP)
1,4-dithiothreitol  (ISO)
1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,4-dinitrotoluene  (ISO)
2,6-dinitrotoluene  (ISO)
2-hydroxypropanoic acid  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diisothiocyano-trans-stilbene-2,2'-disulfonic acid  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-fluorouracil  (ISO)
acrolein  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
alpha-pinene  (ISO)
antimycin A  (ISO)
aristolochic acid  (ISO)
atrazine  (ISO)
azoxystrobin  (ISO)
beauvericin  (ISO)
benzo[a]pyrene  (EXP,ISO)
bisphenol A  (ISO)
Brodifacoum  (ISO)
calcitriol  (ISO)
carbon nanotube  (EXP)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
Cuprizon  (ISO)
dexamethasone  (ISO)
dibenz[a,h]anthracene  (ISO)
dibutyl phthalate  (EXP)
dioxygen  (EXP)
Enterolactone  (ISO)
enzyme inhibitor  (ISO)
ethanol  (EXP)
flavonoids  (ISO)
flutamide  (ISO)
folic acid  (EXP)
genistein  (ISO)
gentamycin  (ISO)
glafenine  (ISO)
indometacin  (ISO)
ivermectin  (ISO)
L-1,4-dithiothreitol  (ISO)
methapyrilene  (ISO)
methylmercury chloride  (ISO)
morusin  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
nitric oxide  (EXP)
oxybenzone  (ISO)
ozone  (ISO)
paracetamol  (ISO)
phenobarbital  (EXP)
picoxystrobin  (ISO)
poly(I:C)  (ISO)
pyrene  (ISO)
rac-lactic acid  (ISO)
rotenone  (ISO)
sodium dichromate  (ISO)
succimer  (EXP)
thapsigargin  (ISO)
titanium dioxide  (EXP)
trichloroethene  (EXP)
troglitazone  (EXP)
tungsten  (EXP)
uranium atom  (ISO)
vinclozolin  (ISO)
zearalenone  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal bone structure  (IEA)
abnormal brain ependyma morphology  (IAGP)
abnormal brain ependyma motile cilium location or orientation  (IAGP)
abnormal brain ependyma motile cilium morphology  (IAGP)
abnormal brain ependyma motile cilium physiology  (IAGP)
abnormal brain morphology  (IEA)
abnormal cerebrospinal fluid flow  (IAGP)
abnormal choroid plexus morphology  (IAGP)
abnormal eye morphology  (IEA)
abnormal heart morphology  (IEA)
abnormal kidney morphology  (IEA)
abnormal lung morphology  (IEA)
abnormal lymph node morphology  (IEA)
abnormal seminal vesicle morphology  (IEA)
abnormal skin morphology  (IEA)
abnormal spleen morphology  (IEA)
abnormal stomach morphology  (IEA)
abnormal testis morphology  (IEA)
abnormal tracheal ciliated epithelium morphology  (IAGP)
astrocytosis  (IAGP)
decreased body length  (IEA)
decreased body size  (IAGP)
decreased body weight  (IAGP)
decreased brain size  (IAGP)
decreased circulating bilirubin level  (IEA)
decreased erythrocyte cell number  (IEA)
decreased heart weight  (IEA)
decreased hematocrit  (IEA)
domed cranium  (IAGP)
enlarged lateral ventricles  (IAGP)
enlarged lymph nodes  (IEA)
enlarged seminal vesicle  (IEA)
enlarged spleen  (IEA)
enlarged stomach  (IEA)
hydrocephaly  (IAGP)
increased blood urea nitrogen level  (IEA)
increased circulating insulin level  (IEA)
increased mean platelet volume  (IEA)
microphthalmia  (IEA)
polycystic kidney  (IEA)
small heart  (IEA)
small hippocampus  (IAGP)
small kidney  (IEA)
small testis  (IEA)
thick skin  (IEA)
thin cerebral cortex  (IAGP)
References

Additional References at PubMed
PMID:8889548   PMID:9880530   PMID:10200558   PMID:10349636   PMID:10556317   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11544199   PMID:11927596   PMID:12034747  
PMID:12203739   PMID:12477932   PMID:15102471   PMID:15456872   PMID:15489334   PMID:15557335   PMID:15782199   PMID:15908698   PMID:16141072   PMID:16141073   PMID:16407552   PMID:16602821  
PMID:17293856   PMID:17634366   PMID:17673164   PMID:18380665   PMID:18636094   PMID:19166300   PMID:19523902   PMID:19706535   PMID:20176808   PMID:20471954   PMID:21267068   PMID:21725061  
PMID:22334701   PMID:22660413   PMID:22785133   PMID:22922362   PMID:23523921   PMID:24457600   PMID:25686249   PMID:27244115   PMID:27336173   PMID:27909058   PMID:28322231   PMID:28361920  
PMID:28671696   PMID:30333137   PMID:30457570   PMID:32602619  


Genomics

Comparative Map Data
Pdcd6ip
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399113,480,812 - 113,537,457 (-)NCBIGRCm39mm39
GRCm39 Ensembl9113,480,812 - 113,537,327 (-)Ensembl
GRCm389113,651,744 - 113,708,279 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9113,651,744 - 113,708,259 (-)EnsemblGRCm38mm10GRCm38
MGSCv379113,560,862 - 113,617,377 (-)NCBIGRCm37mm9NCBIm37
MGSCv369113,503,631 - 113,556,805 (-)NCBImm8
Celera9113,360,961 - 113,417,417 (-)NCBICelera
Cytogenetic Map9F3NCBI
PDCD6IP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl333,798,571 - 33,869,707 (+)EnsemblGRCh38hg38GRCh38
GRCh38333,798,630 - 33,869,703 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37333,840,122 - 33,911,195 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36333,814,561 - 33,886,198 (+)NCBINCBI36hg18NCBI36
Build 34333,814,560 - 33,886,198NCBI
Celera333,783,127 - 33,854,073 (+)NCBI
Cytogenetic Map3p22.3NCBI
HuRef333,781,264 - 33,852,387 (+)NCBIHuRef
CHM1_1333,789,988 - 33,861,201 (+)NCBICHM1_1
Pdcd6ip
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.28113,590,998 - 113,646,795 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl8113,590,998 - 113,646,773 (-)Ensembl
Rnor_6.08121,916,233 - 121,973,145 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8121,916,185 - 121,973,125 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08121,231,793 - 121,287,105 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48118,314,910 - 118,350,134 (-)NCBIRGSC3.4rn4RGSC3.4
Celera8112,840,809 - 112,895,775 (-)NCBICelera
Cytogenetic Map8q32NCBI
Pdcd6ip
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554211,034,843 - 1,110,438 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554211,034,843 - 1,109,637 (+)NCBIChiLan1.0ChiLan1.0
PDCD6IP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1334,016,152 - 34,093,631 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl334,016,474 - 34,093,631 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0333,719,603 - 33,793,301 (+)NCBIMhudiblu_PPA_v0panPan3
PDCD6IP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1234,112,299 - 4,199,230 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl234,112,363 - 4,196,342 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha234,154,337 - 4,240,985 (+)NCBI
ROS_Cfam_1.0234,374,570 - 4,462,420 (+)NCBI
UMICH_Zoey_3.1234,207,505 - 4,294,589 (+)NCBI
UNSW_CanFamBas_1.0234,339,176 - 4,426,011 (+)NCBI
UU_Cfam_GSD_1.0234,308,530 - 4,395,465 (+)NCBI
LOC101964793
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118190,870,278 - 190,948,263 (+)NCBI
SpeTri2.0NW_00493647324,010,942 - 24,086,836 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PDCD6IP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1319,597,108 - 19,698,270 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11319,597,064 - 19,664,047 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21321,193,109 - 21,243,506 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103241851
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11578,265,099 - 78,339,307 (+)NCBI
ChlSab1.1 Ensembl1578,265,252 - 78,339,873 (+)Ensembl
Vero_WHO_p1.0NW_02366604151,646,595 - 51,721,427 (+)NCBI
Pdcd6ip
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478811,772,268 - 11,849,040 (+)NCBI

Position Markers
RH135961  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389113,655,561 - 113,655,746UniSTSGRCm38
MGSCv379113,564,679 - 113,564,864UniSTSGRCm37
Cytogenetic Map9F2UniSTS
C76364  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389113,654,744 - 113,654,959UniSTSGRCm38
MGSCv379113,563,862 - 113,564,077UniSTSGRCm37
Celera9113,363,961 - 113,364,176UniSTS
Cytogenetic Map9F2UniSTS
Whitehead/MRC_RH91130.2UniSTS
AI480591  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389113,652,110 - 113,652,190UniSTSGRCm38
MGSCv379113,561,228 - 113,561,308UniSTSGRCm37
Celera9113,361,327 - 113,361,407UniSTS
Cytogenetic Map9F2UniSTS
Whitehead/MRC_RH91132.49UniSTS
Whitehead/MRC_RH91131.6UniSTS
RH125957  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389113,654,518 - 113,654,731UniSTSGRCm38
MGSCv379113,563,636 - 113,563,849UniSTSGRCm37
Celera9113,363,735 - 113,363,948UniSTS
Cytogenetic Map9F2UniSTS
Whitehead/MRC_RH91129.43UniSTS
A005P37  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389113,654,599 - 113,654,747UniSTSGRCm38
MGSCv379113,563,717 - 113,563,865UniSTSGRCm37
Celera9113,363,816 - 113,363,964UniSTS
Cytogenetic Map9F2UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63332429120362868Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63332429120362868Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963332429120362868Mouse
1302065El1_mepilepsy 1 (mouse)Not determined975775364114474379Mouse
10054492El7_mepilepsy 7 (mouse)Not determined975775364114474379Mouse
1301732Char1_mP. chabaudi malaria resistance QTL 1 (mouse)Not determined981798268115798392Mouse
1300884Sluc11_msusceptibility to lung cancer 11 (mouse)Not determined982910333116910428Mouse
1357461Idd2_minsulin dependent diabetes susceptibility 2 (mouse)Not determined982910333116910428Mouse
10766454Char10_mP. chabaudi malaria resistance QTL 10 (mouse)982910333116910428Mouse
1301487Nociq1_mnociceptive sensitivity inflammatory QTL 1 (mouse)Not determined984528818118528921Mouse
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986230401120230530Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986239845120289624Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986748483120748483Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987800000121800000Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989284925123284925Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989412277123412396Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989563342123563342Mouse
1357657Pymr_mPlasmodium yoelli malaria resistance (mouse)Not determined989977005118938021Mouse
12910770Splic1_mspleen iron content 1 (mouse)991413879124595110Mouse
12910772Lvic6_mliver iron content 6 (mouse)991413879124595110Mouse
12910773Splic3_mspleen iron content 3 (mouse)991413879124595110Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991641084124595110Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991641084124595110Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991641084124595110Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991641084124595110Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991641084124595110Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991641084124595110Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991683173124595110Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991683173124595110Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991683173124595110Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993762590124595110Mouse
1301484Bwq6_mbody weight (mouse)Not determined993762590124595110Mouse
14746992Manh67_mmandible shape 67 (mouse)994036768124595110Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996917590124595110Mouse
1301297Lcho1_mliver cholesterol 1 (mouse)Not determined9101060861124595110Mouse
1357627Tgq2_mtriglyceride QTL 2 (mouse)Not determined9102000187124595110Mouse
1357648Obq18_mobesity QTL 18 (mouse)Not determined9102000187124595110Mouse
1301789Pbwg4_mpostnatal body weight growth 4 (mouse)Not determined9103289445124595110Mouse
10412290Pvacm1l_mplasma vascular cell adhesion molecule 1 levels (mouse)Not determined9103289445124595110Mouse
12879896Berr3_mberghei resistance locus 3 (mouse)9103289445124595110Mouse
13515058Adip20d_madiposity 20d (mouse)9108915010118915010Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1631
Count of miRNA genes:714
Interacting mature miRNAs:918
Transcripts:ENSMUST00000035086, ENSMUST00000111861, ENSMUST00000135545, ENSMUST00000137104, ENSMUST00000142256, ENSMUST00000156425
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001164677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001164678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_011052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011242941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC162177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC167246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF119955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF176514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ005073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ005074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK029827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK033943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK035750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK086540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK129340 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK145893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK157704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK192218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC002261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC026823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC051123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE623112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM899382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT025751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CX210461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000035086   ⟹   ENSMUSP00000035086
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9113,480,812 - 113,537,327 (-)Ensembl
GRCm38.p6 Ensembl9113,651,744 - 113,708,259 (-)Ensembl
RefSeq Acc Id: ENSMUST00000111861   ⟹   ENSMUSP00000107492
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9113,483,540 - 113,537,312 (-)Ensembl
GRCm38.p6 Ensembl9113,654,472 - 113,708,244 (-)Ensembl
RefSeq Acc Id: ENSMUST00000135545
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9113,503,504 - 113,514,483 (-)Ensembl
GRCm38.p6 Ensembl9113,674,436 - 113,685,415 (-)Ensembl
RefSeq Acc Id: ENSMUST00000137104
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9113,488,703 - 113,491,482 (-)Ensembl
GRCm38.p6 Ensembl9113,659,635 - 113,662,414 (-)Ensembl
RefSeq Acc Id: ENSMUST00000142256
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9113,484,638 - 113,486,362 (-)Ensembl
GRCm38.p6 Ensembl9113,655,570 - 113,657,294 (-)Ensembl
RefSeq Acc Id: ENSMUST00000156425
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9113,516,581 - 113,526,645 (-)Ensembl
GRCm38.p6 Ensembl9113,687,513 - 113,697,577 (-)Ensembl
RefSeq Acc Id: NM_001164677   ⟹   NP_001158149
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,480,812 - 113,537,327 (-)NCBI
GRCm389113,651,744 - 113,708,259 (-)NCBI
MGSCv379113,560,862 - 113,617,377 (-)RGD
Celera9113,360,961 - 113,417,417 (-)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001164678   ⟹   NP_001158150
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,480,812 - 113,537,327 (-)NCBI
GRCm389113,651,744 - 113,708,259 (-)NCBI
MGSCv379113,560,862 - 113,617,377 (-)RGD
Celera9113,360,961 - 113,417,417 (-)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_011052   ⟹   NP_035182
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,480,812 - 113,537,327 (-)NCBI
GRCm389113,651,744 - 113,708,259 (-)NCBI
MGSCv379113,560,862 - 113,617,377 (-)RGD
Celera9113,360,961 - 113,417,417 (-)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011242941   ⟹   XP_011241243
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,480,812 - 113,537,457 (-)NCBI
GRCm389113,651,744 - 113,708,279 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030244125   ⟹   XP_030099985
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,480,812 - 113,537,312 (-)NCBI
GRCm389113,651,744 - 113,708,247 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036154688   ⟹   XP_036010581
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,480,812 - 113,526,621 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_035182   ⟸   NM_011052
- Peptide Label: isoform 3
- UniProtKB: Q9WU78 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001158149   ⟸   NM_001164677
- Peptide Label: isoform 1
- UniProtKB: Q9WU78 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001158150   ⟸   NM_001164678
- Peptide Label: isoform 2
- UniProtKB: Q9WU78 (UniProtKB/Swiss-Prot),   Q80Y09 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011241243   ⟸   XM_011242941
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_030099985   ⟸   XM_030244125
- Peptide Label: isoform X3
RefSeq Acc Id: ENSMUSP00000107492   ⟸   ENSMUST00000111861
RefSeq Acc Id: ENSMUSP00000035086   ⟸   ENSMUST00000035086
RefSeq Acc Id: XP_036010581   ⟸   XM_036154688
- Peptide Label: isoform X2
Protein Domains
BRO1

Promoters
RGD ID:6844129
Promoter ID:MM_KWN:58993
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Lung,   MEF_B6,   Spleen
Transcripts:UC009RWM.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369113,561,271 - 113,563,047 (-)MPROMDB
RGD ID:6844919
Promoter ID:MM_KWN:58995
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_4Hour
Transcripts:OTTMUST00000064726
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369113,571,979 - 113,572,479 (-)MPROMDB
RGD ID:6844920
Promoter ID:MM_KWN:58998
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000111853,   NM_001164677,   NM_001164678,   OTTMUST00000064648,   OTTMUST00000064728
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369113,616,906 - 113,617,406 (-)MPROMDB
RGD ID:8671084
Promoter ID:EPDNEW_M13572
Type:initiation region
Name:Pdcd6ip_1
Description:Mus musculus programmed cell death 6 interacting protein , transcriptvariant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389113,708,237 - 113,708,297EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1333753 AgrOrtholog
Ensembl Genes ENSMUSG00000032504 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000035086 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000107492 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000035086 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000111861 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 1.25.40.280 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ALIX_V_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BRO1_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BRO1_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:18571 UniProtKB/Swiss-Prot
MGD MGI:1333753 ENTREZGENE
NCBI Gene 18571 ENTREZGENE
Pfam ALIX_LYPXL_bnd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BRO1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Pdcd6ip PhenoGen
PROSITE BRO1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART BRO1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt PDC6I_MOUSE UniProtKB/Swiss-Prot
  Q6ZPS9_MOUSE UniProtKB/TrEMBL
  Q80Y09 ENTREZGENE, UniProtKB/TrEMBL
  Q9WU78 ENTREZGENE
UniProt Secondary O88695 UniProtKB/Swiss-Prot
  O89014 UniProtKB/Swiss-Prot
  Q3TED2 UniProtKB/Swiss-Prot
  Q8BSL8 UniProtKB/Swiss-Prot
  Q8R0H5 UniProtKB/Swiss-Prot
  Q99LR3 UniProtKB/Swiss-Prot
  Q9QZN8 UniProtKB/Swiss-Prot