Pdlim1 (PDZ and LIM domain 1 (elfin)) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Pdlim1 (PDZ and LIM domain 1 (elfin)) Mus musculus
Analyze
Symbol: Pdlim1
Name: PDZ and LIM domain 1 (elfin)
RGD ID: 68449
MGI Page MGI
Description: Enables transcription coactivator activity. Acts upstream of or within regulation of transcription by RNA polymerase II. Part of transcription regulator complex. Is expressed in several structures, including alimentary system; branchial arch; genitourinary system; heart; and sensory organ. Orthologous to human PDLIM1 (PDZ and LIM domain 1); INTERACTS WITH 1,1-dichloroethene; 1,2-dimethylhydrazine; 17alpha-ethynylestradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: C-terminal LIM domain protein 1; carboxyl terminal LIM domain protein 1; Clim1; CLP; CLP36; elfin; LIM domain protein CLP-36; mCli; mClim1; PDZ and LIM domain protein 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm12104   Gm5864  
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391940,210,683 - 40,260,060 (-)NCBIGRCm39mm39
GRCm39 Ensembl1940,209,617 - 40,260,286 (-)Ensembl
GRCm381940,222,239 - 40,271,616 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1940,221,173 - 40,271,842 (-)EnsemblGRCm38mm10GRCm38
MGSCv371940,296,729 - 40,346,106 (-)NCBIGRCm37mm9NCBIm37
MGSCv361940,275,550 - 40,324,844 (-)NCBImm8
Celera1941,028,383 - 41,076,730 (-)NCBICelera
Cytogenetic Map19C3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
1,1-dichloroethene  (EXP)
1,2-dimethylhydrazine  (EXP)
1-naphthyl isothiocyanate  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,6-dinitrotoluene  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-hydroxyphenyl retinamide  (EXP)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
adefovir pivoxil  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (ISO)
aristolochic acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (ISO)
azoxystrobin  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (EXP,ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (ISO)
bisphenol F  (ISO)
bleomycin A2  (ISO)
buspirone  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
chloroacetaldehyde  (ISO)
chlorpyrifos  (ISO)
cidofovir anhydrous  (ISO)
cisplatin  (ISO)
clodronic acid  (ISO)
cobalt dichloride  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dibutyl phthalate  (EXP)
dichlorine  (ISO)
dioxygen  (ISO)
diuron  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
Enterolactone  (ISO)
entinostat  (ISO)
enzyme inhibitor  (ISO)
ethanol  (EXP)
ethyl methanesulfonate  (ISO)
fenofibrate  (ISO)
folpet  (EXP)
fumonisin B1  (EXP)
gamma-hexachlorocyclohexane  (ISO)
gamma-linolenic acid  (ISO)
glyphosate  (ISO)
ibuprofen  (ISO)
imidacloprid  (ISO)
indometacin  (ISO)
ivermectin  (ISO)
lead diacetate  (EXP)
mercury dibromide  (ISO)
metformin  (ISO)
methylmercury chloride  (ISO)
N-nitrosodiethylamine  (ISO)
N-nitrosomorpholine  (ISO)
nefazodone  (ISO)
nimesulide  (ISO)
oxaliplatin  (ISO)
ozone  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
perfluorooctanoic acid  (ISO)
phenformin  (ISO)
phenobarbital  (EXP)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP)
prednisolone  (ISO)
progesterone  (ISO)
propiconazole  (EXP)
resveratrol  (ISO)
SB 431542  (ISO)
sodium arsenite  (EXP)
Soman  (ISO)
sulforaphane  (ISO)
sunitinib  (ISO)
T-2 toxin  (ISO)
tamoxifen  (EXP)
tauroursodeoxycholic acid  (ISO)
temozolomide  (ISO)
tetrachloromethane  (EXP,ISO)
thiabendazole  (ISO)
thioacetamide  (ISO)
topotecan  (ISO)
trichostatin A  (ISO)
Triptolide  (ISO)
troglitazone  (ISO)
trovafloxacin  (ISO)
valproic acid  (EXP,ISO)
vancomycin  (EXP)
vinclozolin  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11596114   PMID:12464179   PMID:12477932   PMID:12520002   PMID:14610273   PMID:15295034  
PMID:15489334   PMID:15618518   PMID:15782199   PMID:16141072   PMID:16141073   PMID:17991461   PMID:18287559   PMID:18554416   PMID:19366868   PMID:20059953   PMID:20412781   PMID:21267068  
PMID:21873635   PMID:22955732   PMID:24146773   PMID:24457600   PMID:24952961   PMID:27310465   PMID:27689697   PMID:28340616   PMID:28560839   PMID:32325033  


Genomics

Comparative Map Data
Pdlim1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391940,210,683 - 40,260,060 (-)NCBIGRCm39mm39
GRCm39 Ensembl1940,209,617 - 40,260,286 (-)Ensembl
GRCm381940,222,239 - 40,271,616 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1940,221,173 - 40,271,842 (-)EnsemblGRCm38mm10GRCm38
MGSCv371940,296,729 - 40,346,106 (-)NCBIGRCm37mm9NCBIm37
MGSCv361940,275,550 - 40,324,844 (-)NCBImm8
Celera1941,028,383 - 41,076,730 (-)NCBICelera
Cytogenetic Map19C3NCBI
PDLIM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1095,237,572 - 95,291,012 (-)EnsemblGRCh38hg38GRCh38
GRCh381095,237,569 - 95,291,006 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371096,997,329 - 97,050,760 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361096,987,319 - 97,040,771 (-)NCBINCBI36hg18NCBI36
Build 341096,987,321 - 97,040,771NCBI
Celera1090,738,487 - 90,791,969 (-)NCBI
Cytogenetic Map10q23.33NCBI
HuRef1090,624,265 - 90,677,751 (-)NCBIHuRef
CHM1_11097,279,094 - 97,332,709 (-)NCBICHM1_1
Pdlim1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21239,042,372 - 239,091,074 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1239,042,385 - 239,091,076 (-)Ensembl
Rnor_6.01259,308,326 - 259,357,006 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1259,308,296 - 259,357,056 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01266,752,410 - 266,800,840 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41245,350,086 - 245,399,534 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11245,446,644 - 245,496,093 (-)NCBI
Celera1234,889,852 - 234,937,718 (-)NCBICelera
Cytogenetic Map1q54NCBI
Pdlim1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555071,495,925 - 1,523,925 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555071,499,223 - 1,525,924 (-)NCBIChiLan1.0ChiLan1.0
PDLIM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11095,355,669 - 95,389,838 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1095,355,669 - 95,393,871 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01091,848,127 - 91,901,553 (-)NCBIMhudiblu_PPA_v0panPan3
PDLIM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1288,770,882 - 8,817,828 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl288,771,186 - 8,801,354 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha288,947,047 - 8,994,090 (-)NCBI
ROS_Cfam_1.0289,033,997 - 9,079,972 (-)NCBI
UMICH_Zoey_3.1288,749,916 - 8,797,044 (-)NCBI
UNSW_CanFamBas_1.0288,808,695 - 8,855,890 (-)NCBI
UU_Cfam_GSD_1.0288,952,472 - 8,999,504 (-)NCBI
Pdlim1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721338,044,314 - 38,087,612 (+)NCBI
SpeTri2.0NW_0049366364,083,413 - 4,126,728 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PDLIM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14106,735,492 - 106,794,777 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114106,744,320 - 106,793,606 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214116,377,059 - 116,426,077 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PDLIM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1988,398,814 - 88,452,660 (-)NCBI
ChlSab1.1 Ensembl988,397,294 - 88,452,610 (-)Ensembl
Vero_WHO_p1.0NW_02366604849,270,732 - 49,324,931 (-)NCBI
Pdlim1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247376,485,607 - 6,530,511 (-)NCBI

Position Markers
RH126574  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381940,222,265 - 40,222,499UniSTSGRCm38
GRCm38532,421,058 - 32,421,306UniSTSGRCm38
MGSCv37532,723,431 - 32,723,679UniSTSGRCm37
MGSCv371940,296,755 - 40,296,989UniSTSGRCm37
Celera1941,028,409 - 41,028,643UniSTS
Cytogenetic Map19D1UniSTS
Cytogenetic Map5B1UniSTS
Pdlim1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38532,420,637 - 32,421,088UniSTSGRCm38
MGSCv37532,723,010 - 32,723,461UniSTSGRCm37
Celera529,897,957 - 29,898,408UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map19D1UniSTS
cM Map19 UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301228Iba4_minduction of brown adipocytes 4 (mouse)Not determined19932831543328421Mouse
1302019Pgia23_mproteoglycan induced arthritis 23 (mouse)Not determined19981005343810202Mouse
14928311Manh85_mmandible shape 85 (mouse)191193738945937389Mouse
10413881Moe2_mmodifier of epilepsy 2 (mouse)191494561648945738Mouse
1301336Alcp23_malcohol preference locus 23 (mouse)Not determined191593520749935319Mouse
1301633Alcp24_malcohol preference locus 24 (mouse)Not determined191593520749935319Mouse
1302004Lfp2_mlong free running period 2 (mouse)Not determined191831776252317981Mouse
1302063Eae19_mexperimental allergic encephalomyelitis 19 (mouse)Not determined191831776252317981Mouse
4142343Moen2_mmodifier of engrailed QTL 2 (mouse)Not determined192025691554257062Mouse
10412251Mnp_mmodifier of Niemann Pick type C1 (mouse)Not determined192025691554257062Mouse
4141659Pbwg20_mpostnatal body weight growth 20 (mouse)Not determined192139025755390480Mouse
1558876W3q14_mweight 3 weeks QTL 14 (mouse)Not determined192233596253923073Mouse
12790634Ebm1_mEpidermolysis Bullosa modifier 1 (mouse)192500000059000000Mouse
1302123Tlsr8_mthymic lymphoma suppressor region 8 (mouse)Not determined192515863842400477Mouse
1301451Ath16_matherosclerosis 16 (mouse)Not determined192543847859438566Mouse
13506250Renmq1_mrenal mercury accumulation QTL 1 (mouse)192739715561397266Mouse
4141138Femwf11_mfemur work to failure 11 (mouse)Not determined2815190961431566Mouse
4141562Pas3b_mpulmonary adenoma susceptibility 3b (mouse)Not determined2977296261431566Mouse
1300683Fembm7_mfemoral bone morphometry 7 (mouse)Not determined193015278561431566Mouse
1301410Cd8mts6_mCD8 memory T cell subset 6 (mouse)Not determined193015279261431566Mouse
1301942Pas13_mpulmonary adenoma susceptibility 13 (mouse)Not determined193015279261431566Mouse
1300856Nobq2_mNew Zealand obese QTL 2 (mouse)Not determined193090944161431566Mouse
1301741Lith2_mlithogenic gene 2 (mouse)Not determined193300371961431566Mouse
1301639Stnn_mstriatal neuron number (mouse)Not determined193396351461431566Mouse
4141019Tgq29_mtriglyceride QTL 29 (mouse)Not determined3460834861431566Mouse
1301479Sluc1_msusceptibility to lung cancer 1 (mouse)Not determined193603954446773082Mouse
1302170Tanidd1_mtally ho associated non-insulin dependednt diabetes mellitus 1 (mouse)Not determined193676416661431566Mouse
4141650Chldq9_mcholesterol and HDL QTL 9 (mouse)Not determined193789455061431566Mouse
1301466T2dm2_mtype 2 diabetes mellitus 2 (mouse)Not determined193838761861431566Mouse
1302104Lfp1_mlong free running period 1 (mouse)Not determined193919563261431566Mouse
10043896Bw21_mbody weight QTL 21 (mouse)Not determined193960763461431566Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:929
Count of miRNA genes:518
Interacting mature miRNAs:628
Transcripts:ENSMUST00000068439, ENSMUST00000182432, ENSMUST00000182540, ENSMUST00000182636, ENSMUST00000182813
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_016861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC170187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF053367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK076285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK088089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK158173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK158992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC004809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000068439   ⟹   ENSMUSP00000064545
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1940,209,617 - 40,260,060 (-)Ensembl
GRCm38.p6 Ensembl1940,221,173 - 40,271,616 (-)Ensembl
RefSeq Acc Id: ENSMUST00000182432   ⟹   ENSMUSP00000138383
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1940,219,036 - 40,260,286 (-)Ensembl
GRCm38.p6 Ensembl1940,230,592 - 40,271,842 (-)Ensembl
RefSeq Acc Id: ENSMUST00000182540
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1940,210,807 - 40,211,800 (-)Ensembl
GRCm38.p6 Ensembl1940,222,363 - 40,223,356 (-)Ensembl
RefSeq Acc Id: ENSMUST00000182636
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1940,235,736 - 40,260,060 (-)Ensembl
GRCm38.p6 Ensembl1940,247,292 - 40,271,616 (-)Ensembl
RefSeq Acc Id: ENSMUST00000182813
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1940,210,967 - 40,219,249 (-)Ensembl
GRCm38.p6 Ensembl1940,222,523 - 40,230,805 (-)Ensembl
RefSeq Acc Id: NM_016861   ⟹   NP_058557
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391940,210,683 - 40,260,060 (-)NCBI
GRCm381940,222,239 - 40,271,616 (-)ENTREZGENE
MGSCv371940,296,729 - 40,346,106 (-)RGD
Celera1941,028,383 - 41,076,730 (-)RGD
cM Map19 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_058557   ⟸   NM_016861
- UniProtKB: O70400 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000064545   ⟸   ENSMUST00000068439
RefSeq Acc Id: ENSMUSP00000138383   ⟸   ENSMUST00000182432
Protein Domains
LIM zinc-binding   PDZ

Promoters
RGD ID:13679448
Promoter ID:EPDNEW_M23873
Type:initiation region
Name:Pdlim1_1
Description:Mus musculus PDZ and LIM domain 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381940,271,514 - 40,271,574EPDNEW
RGD ID:6830304
Promoter ID:MM_KWN:27015
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell,   Liver,   Lung,   MEF_B4
Transcripts:NM_016861,   UC008HKL.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361940,345,696 - 40,346,196 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1860611 AgrOrtholog
Ensembl Genes ENSMUSG00000055044 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000064545 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000138383 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000068439 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000182432 UniProtKB/TrEMBL
Gene3D-CATH 2.30.42.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro DUF4749 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDLIM1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Zasp-like_motif UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_LIM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:54132 UniProtKB/Swiss-Prot
MGD MGI:1860611 ENTREZGENE
NCBI Gene 54132 ENTREZGENE
PANTHER PTHR24214:SF5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF4749 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LIM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Pdlim1 PhenoGen
PROSITE LIM_DOMAIN_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LIM_DOMAIN_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART LIM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00735 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50156 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt O70400 ENTREZGENE, UniProtKB/Swiss-Prot
  Q3TZ17_MOUSE UniProtKB/TrEMBL
  S4R1V0_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q99K93 UniProtKB/Swiss-Prot