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Gene: Tns1 (tensin 1) Rattus norvegicus

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Symbol:

Tns1

Name:

tensin 1

RGD ID:

68427

Description:

Predicted to enable metal ion binding activity and phosphoprotein phosphatase activity. Predicted to be involved in fibroblast migration. Predicted to act upstream of or within cell-substrate junction assembly. Predicted to be located in cell-substrate junction. Predicted to be active in focal adhesion. Orthologous to human TNS1 (tensin 1); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC301509; similar to tensin; tensin; tensin-1; Tns

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TNS1 (tensin 1)	HGNC	Ensembl, HomoloGene, Inparanoid, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Tns1 (tensin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tns1 (tensin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TNS1 (tensin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TNS1 (tensin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tns1 (tensin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TNS1 (tensin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TNS1 (tensin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tns1 (tensin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	TNS1 (tensin 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Tns1 (tensin 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	tns1a (tensin 1a)	Alliance	DIOPT (Hieranoid\|OrthoFinder\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	tns1b (tensin 1b)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	tns-1	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	by	Alliance	DIOPT (Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	tns1	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	82,941,068 - 83,152,007 (-)	NCBI		GRCr8
mRatBN7.2	9	75,491,886 - 75,702,853 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	75,495,814 - 75,703,225 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	83,949,371 - 84,156,277 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	89,078,281 - 89,285,195 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	87,464,486 - 87,671,405 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	81,190,192 - 81,401,020 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	81,194,119 - 81,400,987 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	80,960,130 - 81,166,699 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	73,235,556 - 73,444,200 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	73,382,620 - 73,386,133 (-)	NCBI
Celera	9	73,072,641 - 73,280,128 (-)	NCBI		Celera
Cytogenetic Map	9	q33	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Neurodevelopmental Disorders (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,1-dichloroethene (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (EXP,ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP,ISO)

2,4,6-tribromophenol (ISO)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

3-Nitrobenzanthrone (ISO)

3H-1,2-dithiole-3-thione (EXP)

4,4'-sulfonyldiphenol (ISO)

4-\{[(5,5,8,8-tetramethyl-5,6,7,8-tetrahydronaphthalen-2-yl)carbonyl]amino\}benzoic acid (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (ISO)

aflatoxin B1 (ISO)

ammonium chloride (EXP)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

Aroclor 1254 (ISO)

arsane (ISO)

arsenic atom (ISO)

atrazine (EXP,ISO)

Benoxacor (ISO)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

benzo[e]pyrene (ISO)

beta-hexachlorocyclohexane (ISO)

bexarotene (EXP)

bis(2-ethylhexyl) phthalate (EXP)

bisphenol A (EXP,ISO)

bisphenol AF (EXP,ISO)

Bisphenol B (ISO)

bisphenol F (ISO)

butanal (ISO)

C60 fullerene (EXP)

cadmium dichloride (ISO)

caffeine (ISO)

calyculin a (ISO)

carbon nanotube (ISO)

cefaloridine (EXP)

CGP 52608 (ISO)

chlordecone (ISO)

ciglitazone (ISO)

ciguatoxin CTX1B (ISO)

cisplatin (EXP,ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

decabromodiphenyl ether (ISO)

deoxynivalenol (ISO)

dexamethasone (ISO)

dibutyl phthalate (EXP,ISO)

dioxygen (ISO)

diuron (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP)

ethanol (ISO)

fenamidone (ISO)

folic acid (ISO)

formaldehyde (ISO)

FR900359 (ISO)

gallic acid (ISO)

genistein (ISO)

glyphosate (EXP,ISO)

Heptachlor epoxide (ISO)

hexadecanoic acid (ISO)

inulin (ISO)

lead diacetate (ISO)

leflunomide (ISO)

Licochalcone B (ISO)

lipopolysaccharide (ISO)

methamphetamine (ISO)

methapyrilene (ISO)

methoxychlor (EXP)

methyl methanesulfonate (ISO)

N,N-diethyl-m-toluamide (EXP)

N-methyl-4-phenylpyridinium (ISO)

N-nitrosodiethylamine (EXP)

nickel atom (ISO)

nickel dichloride (ISO)

nickel sulfate (ISO)

O-methyleugenol (ISO)

orphenadrine (EXP)

ozone (ISO)

paracetamol (EXP,ISO)

paraquat (EXP)

pentachlorophenol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

permethrin (EXP)

phenobarbital (EXP,ISO)

potassium bromate (ISO)

potassium chromate (ISO)

progesterone (EXP)

propiconazole (ISO)

quercetin (ISO)

resveratrol (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

sodium arsenate (ISO)

sodium dichromate (ISO)

sunitinib (ISO)

tetrachloromethane (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

toluene (EXP)

trichostatin A (ISO)

triclosan (ISO)

trimellitic anhydride (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

valproic acid (EXP,ISO)

vancomycin (ISO)

vinclozolin (EXP)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell-substrate junction assembly (IEA,ISO)

fibroblast migration (IBA,IEA,ISO)

Cellular Component

anchoring junction (IEA)

cell-substrate junction (IEA,ISO)

focal adhesion (IBA,IEA,ISO)

Molecular Function

hydrolase activity (IEA)

metal ion binding (IEA)

phosphoprotein phosphatase activity (IEA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Genes for tensin, villin and desmin are linked on mouse chromosome 1.	Jankowski SA and Gumucio DL, Mamm Genome 1995 Oct;6(10):744-5.
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
5.	GOA pipeline	RGD automated data pipeline
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:9087448	PMID:11023826	PMID:11792844	PMID:21423176	PMID:22658674

Genomics

Comparative Map Data

Tns1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	82,941,068 - 83,152,007 (-)	NCBI		GRCr8
mRatBN7.2	9	75,491,886 - 75,702,853 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	75,495,814 - 75,703,225 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	83,949,371 - 84,156,277 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	89,078,281 - 89,285,195 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	87,464,486 - 87,671,405 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	81,190,192 - 81,401,020 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	81,194,119 - 81,400,987 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	80,960,130 - 81,166,699 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	73,235,556 - 73,444,200 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	73,382,620 - 73,386,133 (-)	NCBI
Celera	9	73,072,641 - 73,280,128 (-)	NCBI		Celera
Cytogenetic Map	9	q33	NCBI

TNS1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	217,799,791 - 218,033,982 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	217,799,588 - 218,033,982 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	218,664,514 - 218,867,718 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	218,372,757 - 218,517,041 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	218,493,009 - 218,634,267	NCBI
Celera	2	212,432,401 - 212,576,690 (-)	NCBI		Celera
Cytogenetic Map	2	q35	NCBI
HuRef	2	210,519,516 - 210,524,347 (-)	NCBI		HuRef
HuRef	2	210,526,374 - 210,662,745 (-)	NCBI		HuRef
CHM1_1	2	218,670,911 - 218,815,174 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	218,283,109 - 218,495,456 (-)	NCBI		T2T-CHM13v2.0

Tns1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	73,949,391 - 74,163,707 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	73,949,390 - 74,163,608 (-)	Ensembl		GRCm39 Ensembl
GRCm38	1	73,910,232 - 74,124,548 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	73,910,231 - 74,124,449 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	73,956,805 - 74,171,021 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	73,843,438 - 74,057,654 (-)	NCBI		MGSCv36	mm8
Celera	1	74,471,979 - 74,685,728 (-)	NCBI		Celera
Cytogenetic Map	1	C3	NCBI
cM Map	1	38.17	NCBI

Tns1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955453	15,260,286 - 15,479,519 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955453	15,289,722 - 15,483,970 (+)	NCBI	ChiLan1.0	ChiLan1.0

TNS1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	120,433,886 - 120,646,111 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	120,448,853 - 120,661,063 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	105,061,135 - 105,273,098 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	223,666,272 - 223,852,483 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	223,666,273 - 223,805,653 (-)	Ensembl	panpan1.1		panPan2

TNS1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	37	24,578,855 - 24,776,153 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	37	24,581,806 - 24,808,049 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	37	25,399,889 - 25,596,598 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	37	24,594,870 - 24,792,203 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	37	24,597,850 - 24,806,453 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	37	24,501,077 - 24,698,131 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	37	24,435,719 - 24,632,442 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	37	24,454,878 - 24,651,749 (-)	NCBI		UU_Cfam_GSD_1.0

Tns1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	174,102,338 - 174,311,852 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936569	445,110 - 654,664 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936569	447,730 - 654,662 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TNS1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	119,951,091 - 120,164,713 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	119,948,133 - 120,143,797 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	133,071,108 - 133,110,920 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TNS1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	103,665,575 - 103,886,824 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	103,669,412 - 103,879,641 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	95,520,792 - 95,727,467 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tns1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624823	6,956,918 - 7,150,058 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624823	6,956,913 - 7,149,854 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Tns1
589 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	119
Count of miRNA genes:	81
Interacting mature miRNAs:	94
Transcripts:	ENSRNOT00000035277
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
7411571	Bw138	Body weight QTL 138	14.3	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	9	32535505	77535505	Rat
11353957	Bmd92	Bone mineral density QTL 92		0.01	tibia mineral mass (VT:1000283)	volumetric bone mineral density (CMO:0001553)	9	46114199	91114199	Rat
61385	Edpm9	Estrogen-dependent pituitary mass QTL 9	3.43	0.05	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	9	63869687	108869687	Rat
70218	Cm28	Cardiac mass QTL 28	8.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	25268044	79271759	Rat
724544	Uae9	Urinary albumin excretion QTL 9	4.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	9	25268044	114175309	Rat
1578760	Cm53	Cardiac mass QTL 53	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	56771635	101771635	Rat
1581580	Uae34	Urinary albumin excretion QTL 34			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	62072275	96470995	Rat
12879506	Pur33	Proteinuria QTL 33			urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	9	44649921	89649921	Rat
731164	Uae25	Urinary albumin excretion QTL 25	3.5	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	25661188	100929786	Rat
10058949	Gmadr5	Adrenal mass QTL 5	2	0.014	adrenal gland mass (VT:0010420)	both adrenal glands wet weight to body weight ratio (CMO:0002411)	9	42791513	87976209	Rat
1578757	Pur6	Proteinuria QTL 6	3.3	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	9	62072275	96470995	Rat
631656	Bp108	Blood pressure QTL 108	5.97	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	48598251	93598251	Rat
2303170	Bp332	Blood pressure QTL 332	3.73	0.027	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	55847841	77026453	Rat
8662828	Vetf6	Vascular elastic tissue fragility QTL 6	3.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	9	36962359	92058970	Rat
61352	Bp34	Blood pressure QTL 34	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	42495343	79271511	Rat
724515	Uae16	Urinary albumin excretion QTL 16	8		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	58163035	100929646	Rat
731171	Glom6	Glomerulus QTL 6	2.8	0.0003	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	9	64573531	109573531	Rat
1598834	Memor11	Memory QTL 11	2.5		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	9	36962359	77814038	Rat
70186	Niddm26	Non-insulin dependent diabetes mellitus QTL 26	3.87		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	9	22071169	86369743	Rat
7207814	Bmd91	Bone mineral density QTL 91	3.5		femur size trait (VT:1000369)	femoral neck cross-sectional area (CMO:0001697)	9	23754144	83851531	Rat
6903941	Pur31	Proteinuria QTL 31		0.036	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	9	40194188	85194188	Rat
2303180	Bp333	Blood pressure QTL 333		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	56627713	78595166	Rat
2290450	Scl57	Serum cholesterol level QTL 57	4.15		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	9	36962359	95410867	Rat
11353949	Bp393	Blood pressure QTL 393			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	40194188	85194188	Rat
11353951	Bp394	Blood pressure QTL 394			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	44649921	89649921	Rat
10054125	Srcrt7	Stress Responsive Cort QTL 7	3.33	0.0011	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	9	1	87073594	Rat
1300134	Bp185	Blood pressure QTL 185	3.73		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	61381434	104821652	Rat
7411656	Foco26	Food consumption QTL 26	9.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	32535505	77535505	Rat

Markers in Region

D9Got86

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	75,635,142 - 75,635,371 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	81,333,033 - 81,333,268	NCBI	Rnor6.0
Rnor_5.0	9	81,098,731 - 81,098,966	UniSTS	Rnor5.0
RGSC_v3.4	9	73,376,109 - 73,376,338	RGD	RGSC3.4
RGSC_v3.4	9	73,376,110 - 73,376,338	UniSTS	RGSC3.4
RGSC_v3.1	9	73,523,092 - 73,523,320	RGD
Celera	9	73,212,433 - 73,212,661	UniSTS
RH 3.4 Map	9	696.1	UniSTS
RH 3.4 Map	9	696.1	RGD
RH 2.0 Map	9	769.7	RGD
Cytogenetic Map	9	q33	UniSTS

RH143383

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	75,676,400 - 75,676,548 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	81,374,472 - 81,374,619	NCBI	Rnor6.0
Rnor_5.0	9	81,140,184 - 81,140,331	UniSTS	Rnor5.0
RGSC_v3.4	9	73,417,766 - 73,417,913	UniSTS	RGSC3.4
Celera	9	73,253,695 - 73,253,842	UniSTS
RH 3.4 Map	9	694.7	UniSTS
Cytogenetic Map	9	q33	UniSTS

RH129801

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	75,494,639 - 75,494,856 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	81,192,946 - 81,193,162	NCBI	Rnor6.0
Rnor_5.0	9	80,958,970 - 80,959,186	UniSTS	Rnor5.0
RGSC_v3.4	9	73,234,396 - 73,234,612	UniSTS	RGSC3.4
Celera	9	73,071,481 - 73,071,697	UniSTS
RH 3.4 Map	9	695.4	UniSTS
Cytogenetic Map	9	q33	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001191810	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767220	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083330	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083335	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083336	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083341	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083344	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083346	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083347	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083348	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083349	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083350	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083351	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083352	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266962	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266963	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266965	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266966	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266967	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266968	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266969	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266971	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266972	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAXUCZ010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U26310	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000035277 ⟹ ENSRNOP00000032812

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	75,495,814 - 75,702,758 (-)	Ensembl
Rnor_6.0 Ensembl	9	81,194,119 - 81,400,987 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000096061 ⟹ ENSRNOP00000077508

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	75,495,814 - 75,669,457 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000097211 ⟹ ENSRNOP00000091650

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	75,495,814 - 75,703,225 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000102079 ⟹ ENSRNOP00000096093

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	75,495,814 - 75,676,674 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000110496 ⟹ ENSRNOP00000086859

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	75,495,814 - 75,615,428 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000111419 ⟹ ENSRNOP00000087478

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	75,495,814 - 75,703,225 (-)	Ensembl

RefSeq Acc Id:

NM_001191810 ⟹ NP_001178739

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	82,941,068 - 83,152,007 (-)	NCBI
mRatBN7.2	9	75,491,886 - 75,702,851 (-)	NCBI
Rnor_6.0	9	81,194,106 - 81,400,987 (-)	NCBI
Rnor_5.0	9	80,960,130 - 81,166,699 (-)	NCBI
Celera	9	73,072,641 - 73,280,128 (-)	NCBI

Sequence:

show sequence

ATGGGCTGCACCGTGAGCCTGGTGTGCTGCGAGGCGCTCGAGCCTCTGCCTTCTTGTGGCCCGC
AGCCCCCCGGGACTCCGCCGGGCCCCGCGCGGCCCGAGCGCTCTGAGCCCGGGGGTGCGGCATC
CATCCAGAGGAGGAGGCTGCTGCTTCAGCCAGAAGACCTGGAGGCCCCCAAGACCCACCACTTC
AAGGTGAAGGCCTTCAAGAAGGTGAAGCCCTGTGGTGTCTGCCGGCAGGCCATCACTCGGGAAG
GCTGTATTTGCAAAGTCTGCAGCTTCTCCTGTCATCGGAAATGCCAGGCCAAGGTGGCTGCCCC
TTGCGTTCCTCCATCCAGCCATGAACTGGTGCCCATCGCCACGGAGAGTGTGCCCAAGAATGTA
GTAGATGTGGGGGAAGGAGACTGCCGGGGTGGAAGTACTCCGAAAAACCTGGAGGAGGCCGGCT
CCATGAGAGTTTCTCCAAGCATACAGCCACAGCCACAGCCACAGCCACAGCCTATCAGTCTCTC
TAGAAACCTGAGTGTGAGCCGAGCCATGGAAGACAGCTGTGAGCTGGACCTGGTGTATATCACC
GAACGCATCATCGCCGTGTCCTTCCCCAGCACAGCTAATGAGGAGAACTTCCGCAGCAACCTCC
GTGAAGTGGCTCAGATGCTGAAGTCCAAGCATGGGGGCAACTACCTGCTATTCAACCTCTCTGA
GCAGAGGCCTGACATCACAAAGCTCCATGCTAAGGTCCTGGAATTTGGCTGGCCTGACCTGCAC
ACACCAGCTCTGGAGAAGATATGCAGTGTCTGTAAGGCCATGGACACCTGGCTCAATGCAGACC
CCCACAATGTCGTCGTTCTCCACAACAAGGGAAACCGAGGAAGGATTGGGGTCGTCATTGCAGC
ATATATGCACTACAGCAACATTTCAGCCAGTGCTGACCAGGCTCTTGACAGGTTTGCAATGAAG
AGATTCTATGAGGACAAGATCGTGCCCATTGGCCAGCCATCCCAGAGGAGATATGTGCACTACT
TCAGCGGCCTGCTCTCCGGCTCCATCAAAATGAACAACAAGCCTTTGTTTCTGCACCATGTTAT
CATGCACGGCATCCCCAACTTTGAGTCTAAAGGAGGGTGCCGGCCCTTTCTTCGCATCTACCAA
GCCATGCAACCTGTGTACACATCTGGCATTTACAACATCCCTGGAGACAGCCAGGCCAGCATCT
GTATCACCATCGAACCAGGGCTGCTCCTGAAAGGAGACATCTTGCTGAAGTGTTATCATAAGAA
GTTCCGGAGCCCGGCTCGAGACGTCATCTTCCGAGTGCAGTTCCACACCTGTGCCATCCATGAC
TTGGGGGTCGTTTTTGGGAAGGAAGATCTGGATGAGGCCTTCAAAGATGATCGATTTCCTGACT
ATGGCAAAGTGGAGTTTGTCTTTTCCTATGGACCAGAGAAAATCCAAGGCATGGAGCACCTGGA
GAACGGGCCCAGTGTATCTGTAGACTATAACACTTCCGACCCCCTCATCCGATGGGATTCCTAT
GACAACTTCAATGGGCATCGTGAGGATGGCATGGAAGAAGTGGTGGGACACACCCAAGGGCCGC
TGGATGGGAGCCTGTATGCCAAAGTGAAGAAGAAGGACTCCCTGAATGGCAGTTCGGGGCCTAT
CACCACCGCAAGGCCTGCCCTGTCAGCCACTCCCAACCATGTGGAACACACACTGTCTGTGAGC
AGCGACTCCGGCAACTCCACAGCCTCCACTAAGACAGACAAGACTGACGAGCCAGTCTCTGGGG
CTGCCATTGCCCCTGCTGCCCTGAGTCCTCAGGAGAAGAAAGAGCTGGATCGCCTACTAAGTGG
CTTCGGTGTAGATAGAGAGAAGCAAGGTGCCATGTACCGGGCTCAGCAACTCAGATCCCACCCA
GGCGGGGGCCCGACTGTGTCCTCCCCTGGCCGCCACATTGTCCCAGCTCAGGTTCATGTCAATG
GTGGGGCCCTGGCATCTGAGCGGGAGACGGACATTCTGGATGATGAGCTGCCCATCCAGGATGG
GCAGAGTGGGGGCAGCATGGGAACGCTGTCTTCCCTGGATGGGGTCACCAACACCAGCGAAGGT
GGCTACCCAGAGACCCTGTCCCCACTGACCAATGGTCTGGACAAACCCTATCCCACAGAACCTA
TTCTCAACGGGGGAGGCTACCCCTATGAGTCTGCCAACCGGGTGGTACCTGTTCATAGCAGTCA
CTCGGCTCCCATTCGACCCTCCTACTCTGCTCAGGAGGGTTTAGGTGGCTACCAGCGTGAGGGA
CCCCACCCGGCCTGGTCAAAACAAGTGACCAGCGCTCACCGTGGCTATGACCCCAGTGGTCTAT
TCCGATCCCAGTCCTTTCCAGATGTGGAGCCTCAGCTGCCCCAAGCTCCAGCCCGTGGGGGCAG
CAGCCGAGAGGCTGTGCAGAGGGGCCTGAATTCATGGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCCCACCCACCTCCCCGCCAGCAGGAGC
GATCCCCACTGCAGAGTCTAGCCTGCAGCAAGCCTAGCCCCCATCTGTCAGCAGAGACCCCCAT
ACCAGCTCTCCCAGAGTTCCCAAGGGCAGCCTCCCAGCAGGAGATTGAGCAGTCCATCGAAACT
CTCAATATGTTGATGCTGGACTTGGAGCCAGCCTCAGCTGCTGCCCCTCTTCATAAGTCCCAGA
GTGTCCCTGGGGCCTGGCCAGGGGCTTCCCCACTCTCTTCCCAGCCCCTCTTGGGGTCTTCCTG
CCAGTCCCACCCACTGACCCAGTCCAGATCTGGCTATATCCCCAGTGGGGACACCCTGGGAGCC
CCGGAGCTGCTCTCTTCTGGAAGGTCTTACTCACCTTACGATTATCAGCTGCATCCAGCTGCAT
CCAACCAGAGTTTCCGGCCAAAAAGTCCAGCCTCTTCCACCTTCCTTCCAAGCCCTCATAGCTC
TGCAGGGCCTCAGGAGCCCCCAGCCTCTCTCCCTGGTCTCATCGCCGAGCCTCAGCTCCCACTG
AAGGAAACTACTTCAGATACCTCCCGAACTCCAGAGGAGGAGCCGCTGAACCTGGAAGGGCTGG
TAGCCCATCGGGTAGCAGGGGTTCAGGCTCGGGAGAGGCAGCCTGCAGAGCCCCCAGCCCCACT
CCGGAGGCGAGCAGCCAGTGATGGACAGTATGAGAACCAGTCTCCGGAGGCCACATCCCCCCGT
AGTCCTGGGGTCCGCTCCCCCGTCCAGTGCGTCTCCCCTGAGTTGGCTCTTACCATTGCCCTCA
ATCCTGGAGGGCGCCCCAAAGAGCCCCATTTGCATAGCTACAAGGAGGCCTTTGAGGAGATGGA
GGGGACCTCCCCAAGCAGCCCACCACCCAGCGTGGCACGTTCTCCTCCAGGTCTGGCTAAGACA
CCCCTGTCTGCTCTGGGCCTGAAACCCCACAACCCAGCGGACATCTTGCTGCACCCCACGGGTG
TTGCCAGAAGACTGATCCAGCCAGAGGAAGATGAGGGAGAGGAGGTAGCTAAGCCTCCAGAAGA
GCCCCGGAGCTATGTGGAGTCTGTTGCAAGGACAGCAGTGGCAGGCCCTCGAGCTCAGGACGTG
GAGCCTAAGAGCTTCAGTGCACCAGCCACTCATGCCTATGGCCACGAGACACCCCTGAGAAACG
GGACTCCCGGAGGCTCCTTTGTCTCCCCCAGCCCCCTTTCCACAAGCAGTCCCATCCTCAGTGC
TGACAGCACTTCCGTGGGCAGTTTCCCATCAGCGGGAAGCAGTGACCAGGGTCCCCGGACACCC
ATCCAGCCCATGCTGGACTCCAGCATTCGCTCAGGCAGCTTGGGGCAGCCGAGCCCTGCAGCCT
TGAGTTATCAGAGCTCCTCACCTGTCCCTGTTGGTGGCAGCAGCTACAGCAGCCCTGACTACTC
CCTTCAACCATTCAGCTCTTCTCCAGAAAGCCAGGGCCAGCCACATTTCAGTGCGGCCAGCGTC
CACATGGTGCCTGGGAGCCCTCAGGCACGACACAGGACAGTGGGCACCAACACTCCACCTAGTC
CCGGCTTTGGCCGGCGGGCCATCAACCCCACCATGGCTGCCCCTGGTAGTCCCAGTTTGAGCCA
CCGACAGGTGATGGGTCCATCTGGTCCAGGTTTCCATGGTAACGTGGTTTCTGGCCACCCAACC
AGTGCAACGGTTGCTCCTGGAAGTCCCAGCTTGGGCCGGCACCCAGTGGGAAGCCATCAAGTTC
CAGGTCTCCACAGCGGTGTGGTCACTACTCCAGGGAGCCCAAGCCTGGGCCGACACCCTGGGGC
CCACCAAGGGAATCTGGTCTCCAGTCTCCATGGCAATGCAGTCATTAGCCCTGGGAGCCCCAGT
TTGGGCCGGCACCTGGGTGGGTCTGGATCTGTGGTTCCTGGAAGCCCCAGCTTGGACCGGCATG
TAGCTTATGGTGGCTACTCTACCCCTGAGGACCGAAGACCAACACTGTCCCGGCAAAGCAGTGC
CTCAGGCTACCAGGCTCCTTCCACACCGTCATTCCCTGTTTCTCCTGCCTACTACCCTGGCCTG
AGCAGCCCTGCCACCTCACCCTCGCCAGACTCAGCAGCCTTCCGGCAAGGGAGCCCCACACCAG
CCTTACCAGAGAAGCGGAGGATGTCAGTGGGAGACCGGGCAGGCAGTCTCCCCAACTATGCTAC
CATCAATGGGAAAGTGTCCTCCTCGCCTGTCGCCAATGGCATGGCCAGCCCCAGTGGGAGCAGC
ACCGTTTCCTTCTCTCACACGCTTCCAGACTTTTCCAAGTACTCGATGCCAGATAATAGTCCGG
AGACACGGGCTAAAGTGAAGTTTGTCCAGGATACTTCCAAGTATTGGTACAAGCCTGAGATCTC
CAGAGAGCAGGCCATTGCACTCCTGAAGGATCAGGAGCCAGGGGCCTTCATCATCCGAGACAGC
CACTCCTTCCGAGGGGCTTATGGACTGGCCATGAAGGTGTCCTCACCCCCTCCAACCATTACTC
AGCAGGGCAAGAAAGGAGACATGACCCATGAGCTGGTGAGGCACTTTCTGATCGAGACAGGCCC
TAGAGGAGTCAAGCTCAAGGGCTGTCCCAATGAGCCAAACTTTGGCTCCCTTTCTGCCCTCGTC
TATCAGCACTCCGTCATCCCACTGGCCCTGCCCTGTAAGCTGGTCATTCCAAGCCGAGACCCCA
CAGATGAATCAAAAGATAGCTCAGGCCCTGCCAACTCAACCACTGACCTGCTGAAGCAAGGAGC
AGCTTGCAATGTGCTCTTCATCAATTCTGTGGATATGGAGTCACTCACCGGGCCACAGGCAATT
TCCAAAGCCACATCTGAGACTTTGGCTGCTGACCCCACGCCAGCTGCCACCATTGTTCACTTCA
AGGTCTCTGCCCAAGGAATCACACTGACTGACAATCAAAGAAAGCTCTTCTTCAGACGACATTA
CCCCCTCAACACTGTCACCTTCTGTGACCTGGATCCACAAGAAAGGAAGTGGATGAAGACAGAG
GGAGGTGCCCCTGCTAAGCTCTTCGGCTTCGTGGCCCGGAAGCAGGGCAGCACCACAGACAACG
CTTGCCACCTCTTCGCAGAGCTTGACCCCAACCAGCCTGCGTCTGCCATTGTCAACTTCGTCTC
CAAGGTCATGCTGAGTGCTGGCCAAAAGAGATGAACGAATCCTGGAGCCCTTGCCCAAGGCTGG
GGCACTGGGGACGGGGTGTGTGGGGAGGGATCTGCGAATCCTGACCACCTTGAATCCAGAACGA
GGGCTTTGGGTCGACCGTGGAGAAGGAGAGAAGAAAGTGCAATGCTGGGAGAGGGAAGTGAATT
GTGGAGGGAGGGAGGGGAACAGGAGGAAGAGGAAGGAAGGAAGAAGAGAGGAACTCGAAATCCC
CTGTACAGATGGAAGCCACACCTCCCAAAGCCTCTCCAGCTAGCTGGGGCCCCTCCCCCTCACC
TCCCAAAGCCTCTCCAGCTAGCTGGGGCCCCTCCCCCTCCGAGAGAATTGAGCTCCCACAGGCA
CACAGCCCTTGGGGGGACCCTATTTCATGGAGCAACAAAAAAGCTC

hide sequence

RefSeq Acc Id:

XM_039083330 ⟹ XP_038939258

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	82,941,068 - 83,151,914 (-)	NCBI
mRatBN7.2	9	75,491,886 - 75,702,853 (-)	NCBI

RefSeq Acc Id:

XM_039083335 ⟹ XP_038939263

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	82,941,068 - 83,118,600 (-)	NCBI
mRatBN7.2	9	75,491,886 - 75,669,426 (-)	NCBI

RefSeq Acc Id:

XM_039083336 ⟹ XP_038939264

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	82,941,068 - 83,151,914 (-)	NCBI
mRatBN7.2	9	75,491,886 - 75,702,851 (-)	NCBI

RefSeq Acc Id:

XM_039083341 ⟹ XP_038939269

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	82,941,068 - 83,064,308 (-)	NCBI
mRatBN7.2	9	75,491,886 - 75,615,415 (-)	NCBI

RefSeq Acc Id:

XM_039083344 ⟹ XP_038939272

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	82,941,068 - 83,044,002 (-)	NCBI
mRatBN7.2	9	75,491,886 - 75,647,189 (-)	NCBI

RefSeq Acc Id:

XM_039083346 ⟹ XP_038939274

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	82,941,068 - 83,044,002 (-)	NCBI
mRatBN7.2	9	75,491,886 - 75,647,189 (-)	NCBI

RefSeq Acc Id:

XM_039083347 ⟹ XP_038939275

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	82,941,068 - 83,044,002 (-)	NCBI
mRatBN7.2	9	75,491,886 - 75,647,189 (-)	NCBI

RefSeq Acc Id:

XM_039083348 ⟹ XP_038939276

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	82,941,068 - 83,044,002 (-)	NCBI
mRatBN7.2	9	75,491,886 - 75,647,189 (-)	NCBI

RefSeq Acc Id:

XM_039083349 ⟹ XP_038939277

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	82,941,068 - 83,064,595 (-)	NCBI
mRatBN7.2	9	75,491,886 - 75,615,414 (-)	NCBI

RefSeq Acc Id:

XM_039083350 ⟹ XP_038939278

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	82,941,068 - 83,027,987 (-)	NCBI
mRatBN7.2	9	75,491,886 - 75,580,080 (-)	NCBI

RefSeq Acc Id:

XM_039083351 ⟹ XP_038939279

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	82,941,068 - 83,031,146 (-)	NCBI
mRatBN7.2	9	75,491,886 - 75,581,973 (-)	NCBI

RefSeq Acc Id:

XM_039083352 ⟹ XP_038939280

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	82,941,068 - 83,096,147 (-)	NCBI
mRatBN7.2	9	75,491,886 - 75,646,972 (-)	NCBI

RefSeq Acc Id:

XM_063266962 ⟹ XP_063123032

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	82,941,068 - 83,044,002 (-)	NCBI

RefSeq Acc Id:

XM_063266963 ⟹ XP_063123033

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	82,941,068 - 83,044,002 (-)	NCBI

RefSeq Acc Id:

XM_063266965 ⟹ XP_063123035

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	82,941,068 - 83,151,914 (-)	NCBI

RefSeq Acc Id:

XM_063266966 ⟹ XP_063123036

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	82,941,068 - 83,151,914 (-)	NCBI

RefSeq Acc Id:

XM_063266967 ⟹ XP_063123037

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	82,941,068 - 83,044,002 (-)	NCBI

RefSeq Acc Id:

XM_063266968 ⟹ XP_063123038

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	82,941,068 - 83,044,002 (-)	NCBI

RefSeq Acc Id:

XM_063266969 ⟹ XP_063123039

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	82,941,068 - 83,044,002 (-)	NCBI

RefSeq Acc Id:

XM_063266971 ⟹ XP_063123041

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	82,941,068 - 83,044,521 (-)	NCBI

RefSeq Acc Id:

XM_063266972 ⟹ XP_063123042

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	82,941,068 - 82,993,470 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001178739	(Get FASTA)	NCBI Sequence Viewer
	XP_038939258	(Get FASTA)	NCBI Sequence Viewer
	XP_038939263	(Get FASTA)	NCBI Sequence Viewer
	XP_038939264	(Get FASTA)	NCBI Sequence Viewer
	XP_038939269	(Get FASTA)	NCBI Sequence Viewer
	XP_038939272	(Get FASTA)	NCBI Sequence Viewer
	XP_038939274	(Get FASTA)	NCBI Sequence Viewer
	XP_038939275	(Get FASTA)	NCBI Sequence Viewer
	XP_038939276	(Get FASTA)	NCBI Sequence Viewer
	XP_038939277	(Get FASTA)	NCBI Sequence Viewer
	XP_038939278	(Get FASTA)	NCBI Sequence Viewer
	XP_038939279	(Get FASTA)	NCBI Sequence Viewer
	XP_038939280	(Get FASTA)	NCBI Sequence Viewer
	XP_063123032	(Get FASTA)	NCBI Sequence Viewer
	XP_063123033	(Get FASTA)	NCBI Sequence Viewer
	XP_063123035	(Get FASTA)	NCBI Sequence Viewer
	XP_063123036	(Get FASTA)	NCBI Sequence Viewer
	XP_063123037	(Get FASTA)	NCBI Sequence Viewer
	XP_063123038	(Get FASTA)	NCBI Sequence Viewer
	XP_063123039	(Get FASTA)	NCBI Sequence Viewer
	XP_063123041	(Get FASTA)	NCBI Sequence Viewer
	XP_063123042	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAA67648	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000032812
	ENSRNOP00000032812.6
	ENSRNOP00000077508
	ENSRNOP00000077508.1
	ENSRNOP00000086859
	ENSRNOP00000086859.1
	ENSRNOP00000087478.1
	ENSRNOP00000091650
	ENSRNOP00000091650.1
	ENSRNOP00000096093
	ENSRNOP00000096093.1

RefSeq Acc Id:

NP_001178739 ⟸ NM_001191810

- UniProtKB:

A0A8I5Y194 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGCTVSLVCCEALEPLPSCGPQPPGTPPGPARPERSEPGGAASIQRRRLLLQPEDLEAPKTHHF
KVKAFKKVKPCGVCRQAITREGCICKVCSFSCHRKCQAKVAAPCVPPSSHELVPIATESVPKNV
VDVGEGDCRGGSTPKNLEEAGSMRVSPSIQPQPQPQPQPISLSRNLSVSRAMEDSCELDLVYIT
ERIIAVSFPSTANEENFRSNLREVAQMLKSKHGGNYLLFNLSEQRPDITKLHAKVLEFGWPDLH
TPALEKICSVCKAMDTWLNADPHNVVVLHNKGNRGRIGVVIAAYMHYSNISASADQALDRFAMK
RFYEDKIVPIGQPSQRRYVHYFSGLLSGSIKMNNKPLFLHHVIMHGIPNFESKGGCRPFLRIYQ
AMQPVYTSGIYNIPGDSQASICITIEPGLLLKGDILLKCYHKKFRSPARDVIFRVQFHTCAIHD
LGVVFGKEDLDEAFKDDRFPDYGKVEFVFSYGPEKIQGMEHLENGPSVSVDYNTSDPLIRWDSY
DNFNGHREDGMEEVVGHTQGPLDGSLYAKVKKKDSLNGSSGPITTARPALSATPNHVEHTLSVS
SDSGNSTASTKTDKTDEPVSGAAIAPAALSPQEKKELDRLLSGFGVDREKQGAMYRAQQLRSHP
GGGPTVSSPGRHIVPAQVHVNGGALASERETDILDDELPIQDGQSGGSMGTLSSLDGVTNTSEG
GYPETLSPLTNGLDKPYPTEPILNGGGYPYESANRVVPVHSSHSAPIRPSYSAQEGLGGYQREG
PHPAWSKQVTSAHRGYDPSGLFRSQSFPDVEPQLPQAPARGGSSREAVQRGLNSWQQQQQQQQQ
QQQQQQQQQQQQPHPPPRQQERSPLQSLACSKPSPHLSAETPIPALPEFPRAASQQEIEQSIET
LNMLMLDLEPASAAAPLHKSQSVPGAWPGASPLSSQPLLGSSCQSHPLTQSRSGYIPSGDTLGA
PELLSSGRSYSPYDYQLHPAASNQSFRPKSPASSTFLPSPHSSAGPQEPPASLPGLIAEPQLPL
KETTSDTSRTPEEEPLNLEGLVAHRVAGVQARERQPAEPPAPLRRRAASDGQYENQSPEATSPR
SPGVRSPVQCVSPELALTIALNPGGRPKEPHLHSYKEAFEEMEGTSPSSPPPSVARSPPGLAKT
PLSALGLKPHNPADILLHPTGVARRLIQPEEDEGEEVAKPPEEPRSYVESVARTAVAGPRAQDV
EPKSFSAPATHAYGHETPLRNGTPGGSFVSPSPLSTSSPILSADSTSVGSFPSAGSSDQGPRTP
IQPMLDSSIRSGSLGQPSPAALSYQSSSPVPVGGSSYSSPDYSLQPFSSSPESQGQPHFSAASV
HMVPGSPQARHRTVGTNTPPSPGFGRRAINPTMAAPGSPSLSHRQVMGPSGPGFHGNVVSGHPT
SATVAPGSPSLGRHPVGSHQVPGLHSGVVTTPGSPSLGRHPGAHQGNLVSSLHGNAVISPGSPS
LGRHLGGSGSVVPGSPSLDRHVAYGGYSTPEDRRPTLSRQSSASGYQAPSTPSFPVSPAYYPGL
SSPATSPSPDSAAFRQGSPTPALPEKRRMSVGDRAGSLPNYATINGKVSSSPVANGMASPSGSS
TVSFSHTLPDFSKYSMPDNSPETRAKVKFVQDTSKYWYKPEISREQAIALLKDQEPGAFIIRDS
HSFRGAYGLAMKVSSPPPTITQQGKKGDMTHELVRHFLIETGPRGVKLKGCPNEPNFGSLSALV
YQHSVIPLALPCKLVIPSRDPTDESKDSSGPANSTTDLLKQGAACNVLFINSVDMESLTGPQAI
SKATSETLAADPTPAATIVHFKVSAQGITLTDNQRKLFFRRHYPLNTVTFCDLDPQERKWMKTE
GGAPAKLFGFVARKQGSTTDNACHLFAELDPNQPASAIVNFVSKVMLSAGQKR

hide sequence

Ensembl Acc Id:

ENSRNOP00000032812 ⟸ ENSRNOT00000035277

RefSeq Acc Id:	XP_038939258 ⟸ XM_039083330
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I5Y194 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939264 ⟸ XM_039083336
- Peptide Label:	isoform X7
- UniProtKB:	A0A8I5Y194 (UniProtKB/TrEMBL), A0A8I6A4G0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939263 ⟸ XM_039083335
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I5Y194 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939276 ⟸ XM_039083348
- Peptide Label:	isoform X15
- UniProtKB:	F1LN42 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939274 ⟸ XM_039083346
- Peptide Label:	isoform X13
- UniProtKB:	F1LN42 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939275 ⟸ XM_039083347
- Peptide Label:	isoform X14
- UniProtKB:	F1LN42 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939272 ⟸ XM_039083344
- Peptide Label:	isoform X11
- UniProtKB:	F1LN42 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939280 ⟸ XM_039083352
- Peptide Label:	isoform X10
- UniProtKB:	F1LN42 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939269 ⟸ XM_039083341
- Peptide Label:	isoform X10
- UniProtKB:	F1LN42 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939277 ⟸ XM_039083349
- Peptide Label:	isoform X10
- UniProtKB:	F1LN42 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939279 ⟸ XM_039083351
- Peptide Label:	isoform X10
- UniProtKB:	F1LN42 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939278 ⟸ XM_039083350
- Peptide Label:	isoform X10
- UniProtKB:	F1LN42 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000087478 ⟸ ENSRNOT00000111419

Ensembl Acc Id:

ENSRNOP00000096093 ⟸ ENSRNOT00000102079

Ensembl Acc Id:

ENSRNOP00000091650 ⟸ ENSRNOT00000097211

Ensembl Acc Id:

ENSRNOP00000077508 ⟸ ENSRNOT00000096061

Ensembl Acc Id:

ENSRNOP00000086859 ⟸ ENSRNOT00000110496

RefSeq Acc Id:	XP_063123036 ⟸ XM_063266966
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I5Y194 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123035 ⟸ XM_063266965
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I5Y194 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123041 ⟸ XM_063266971
- Peptide Label:	isoform X16
- UniProtKB:	F1LN42 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123039 ⟸ XM_063266969
- Peptide Label:	isoform X12
- UniProtKB:	F1LN42 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123038 ⟸ XM_063266968
- Peptide Label:	isoform X9
- UniProtKB:	F1LN42 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123037 ⟸ XM_063266967
- Peptide Label:	isoform X8
- UniProtKB:	F1LN42 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123033 ⟸ XM_063266963
- Peptide Label:	isoform X2
- UniProtKB:	F1LN42 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123032 ⟸ XM_063266962
- Peptide Label:	isoform X1
- UniProtKB:	F1LN42 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123042 ⟸ XM_063266972
- Peptide Label:	isoform X17

Protein Domains

C2 tensin-type Phorbol-ester/DAG-type Phosphatase tensin-type SH2

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1LN42-F1-model_v2	AlphaFold	F1LN42	1-1909	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:68427	AgrOrtholog
BioCyc Gene	G2FUF-27152	BioCyc
Ensembl Genes	ENSRNOG00000014182	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000035277	ENTREZGENE
	ENSRNOT00000035277.6	UniProtKB/TrEMBL
	ENSRNOT00000096061	ENTREZGENE
	ENSRNOT00000096061.1	UniProtKB/TrEMBL
	ENSRNOT00000097211	ENTREZGENE
	ENSRNOT00000097211.1	UniProtKB/TrEMBL
	ENSRNOT00000102079	ENTREZGENE
	ENSRNOT00000102079.1	UniProtKB/TrEMBL
	ENSRNOT00000110496	ENTREZGENE
	ENSRNOT00000110496.1	UniProtKB/TrEMBL
	ENSRNOT00000111419.1	UniProtKB/TrEMBL
Gene3D-CATH	2.30.29.30	UniProtKB/TrEMBL
	2.60.40.1110	UniProtKB/TrEMBL
	3.30.505.10	UniProtKB/TrEMBL
	3.30.60.20	UniProtKB/TrEMBL
	3.90.190.10	UniProtKB/TrEMBL
InterPro	C1-like_sf	UniProtKB/TrEMBL
	C2_domain_sf	UniProtKB/TrEMBL
	PH_like_dom	UniProtKB/TrEMBL
	Prot-tyrosine_phosphatase-like	UniProtKB/TrEMBL
	Prot_Kinase_C-like_PE/DAG-bd	UniProtKB/TrEMBL
	PTB	UniProtKB/TrEMBL
	PTyr_interaction_dom	UniProtKB/TrEMBL
	SH2	UniProtKB/TrEMBL
	SH2_dom_sf	UniProtKB/TrEMBL
	Tensin_like_SH2	UniProtKB/TrEMBL
	Tensin_lipid_phosphatase_dom	UniProtKB/TrEMBL
	Tensin_phosphatase_C2-dom	UniProtKB/TrEMBL
	Tensin_PTB	UniProtKB/TrEMBL
	Tensin_PTEN_phosphatase	UniProtKB/TrEMBL
	Tyr_Pase_cat	UniProtKB/TrEMBL
NCBI Gene	Tns1	ENTREZGENE
PANTHER	TENSIN	UniProtKB/TrEMBL
	TENSIN-1	UniProtKB/TrEMBL
Pfam	PTB	UniProtKB/TrEMBL
	PTEN_C2	UniProtKB/TrEMBL
	SH2	UniProtKB/TrEMBL
PhenoGen	Tns1	PhenoGen
PROSITE	C2_TENSIN	UniProtKB/TrEMBL
	PPASE_TENSIN	UniProtKB/TrEMBL
	SH2	UniProtKB/TrEMBL
	ZF_DAG_PE_1	UniProtKB/TrEMBL
	ZF_DAG_PE_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000014182	RatGTEx
SMART	PTB	UniProtKB/TrEMBL
	PTEN_C2	UniProtKB/TrEMBL
	PTPc_motif	UniProtKB/TrEMBL
	SH2	UniProtKB/TrEMBL
	SM00109	UniProtKB/TrEMBL
Superfamily-SCOP	PH domain-like	UniProtKB/TrEMBL
	SSF49562	UniProtKB/TrEMBL
	SSF52799	UniProtKB/TrEMBL
	SSF55550	UniProtKB/TrEMBL
	SSF57889	UniProtKB/TrEMBL
UniProt	A0A8I5Y194	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A4G0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A656_RAT	UniProtKB/TrEMBL
	A0A8I6AFL2_RAT	UniProtKB/TrEMBL
	A0A8I6AQ89_RAT	UniProtKB/TrEMBL
	F1LN42	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-05-05	Tns1	tensin 1	LOC301509	similar to tensin	Data merged from RGD:1583849	737654	APPROVED
2008-02-18	Tns1	tensin 1	Tns	tensin	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-19	LOC301509	similar to tensin			Symbol and Name status set to provisional	70820	PROVISIONAL
2002-06-10	Tns	tensin			Name updated	70584	APPROVED

RGD Curation Notes

Note Type	Note	Reference

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar