CNOT7P1 (CCR4-NOT transcription complex subunit 7 pseudogene 1) - Rat Genome Database

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Gene: CNOT7P1 (CCR4-NOT transcription complex subunit 7 pseudogene 1) Homo sapiens
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Symbol: CNOT7P1
Name: CCR4-NOT transcription complex subunit 7 pseudogene 1
RGD ID: 6777190
HGNC Page HGNC:44248
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: CNOT7  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X69,937,288 - 69,938,257 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX69,937,166 - 69,938,017 (-)EnsemblGRCh38hg38GRCh38
GRCh37X69,157,138 - 69,158,107 (-)NCBIGRCh37GRCh37hg19GRCh37
CeleraX69,510,393 - 69,511,247 (-)NCBICelera
Cytogenetic MapXq13.1NCBI
HuRefX62,977,945 - 62,978,799 (-)NCBIHuRef
CHM1_1X69,050,628 - 69,051,482 (-)NCBICHM1_1
T2T-CHM13v2.0X68,370,638 - 68,371,607 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:193
Count of miRNA genes:188
Interacting mature miRNAs:191
Transcripts:ENST00000429006
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 1 2
Low 16 18 28 19 206 19 27 2 35 35 39 40 1 3
Below cutoff 648 841 621 170 459 120 1560 660 949 177 530 679 56 450 960 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000429006
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX69,937,166 - 69,938,017 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC CNOT7P1 COSMIC
Ensembl Genes ENSG00000233229 Ensembl
GTEx ENSG00000233229 GTEx
HGNC ID HGNC:44248 ENTREZGENE
Human Proteome Map CNOT7P1 Human Proteome Map
NCBI Gene CNOT7P1 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-18 CNOT7P1  CCR4-NOT transcription complex subunit 7 pseudogene 1    CCR4-NOT transcription complex, subunit 7 pseudogene 1  Symbol and/or name change 5135510 APPROVED