Mipol1 (mirror-image polydactyly 1) - Rat Genome Database
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Gene: Mipol1 (mirror-image polydactyly 1) Rattus norvegicus
Analyze
Symbol: Mipol1
Name: mirror-image polydactyly 1
RGD ID: 6504372
Description: Predicted to have identical protein binding activity. Predicted to localize to nucleus. Orthologous to human MIPOL1 (mirror-image polydactyly 1); INTERACTS WITH acrylamide; bromobenzene; (-)-epigallocatechin 3-gallate (ortholog).
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2674,755,314 - 75,090,403 (+)NCBI
Rnor_6.0 Ensembl678,172,790 - 78,499,599 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0678,172,842 - 78,506,232 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0687,786,106 - 88,030,811 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera673,595,098 - 73,886,814 (+)NCBICelera
Cytogenetic Map6q23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (ISO)

Molecular Function

References

Additional References at PubMed
PMID:19667180   PMID:25416956  


Genomics

Comparative Map Data
Mipol1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2674,755,314 - 75,090,403 (+)NCBI
Rnor_6.0 Ensembl678,172,790 - 78,499,599 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0678,172,842 - 78,506,232 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0687,786,106 - 88,030,811 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera673,595,098 - 73,886,814 (+)NCBICelera
Cytogenetic Map6q23NCBI
MIPOL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1437,197,913 - 37,552,361 (+)EnsemblGRCh38hg38GRCh38
GRCh381437,197,930 - 37,579,207 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371437,667,142 - 38,021,566 (+)NCBIGRCh37GRCh37hg19GRCh37
GRCh371437,667,118 - 38,020,464 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361436,736,907 - 37,090,215 (+)NCBINCBI36hg18NCBI36
Build 341436,736,906 - 37,090,214NCBI
Celera1417,530,709 - 17,881,334 (+)NCBI
Cytogenetic Map14q13.3-q21.1NCBI
HuRef1417,781,427 - 18,134,355 (+)NCBIHuRef
CHM1_11437,667,168 - 38,019,084 (+)NCBICHM1_1
Mipol1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391257,277,211 - 57,504,027 (+)NCBIGRCm39mm39
GRCm381257,230,425 - 57,457,241 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1257,230,427 - 57,497,199 (+)EnsemblGRCm38mm10GRCm38
MGSCv371258,331,412 - 58,558,228 (+)NCBIGRCm37mm9NCBIm37
MGSCv361255,162,184 - 55,435,044 (+)NCBImm8
Celera1258,397,365 - 58,637,765 (+)NCBICelera
Cytogenetic Map12C1NCBI
cM Map1224.7NCBI
Mipol1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540923,637,019 - 23,880,323 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540923,605,072 - 23,934,045 (-)NCBIChiLan1.0ChiLan1.0
MIPOL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11436,312,593 - 36,699,312 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1436,334,202 - 36,672,352 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01417,950,537 - 18,337,540 (+)NCBIMhudiblu_PPA_v0panPan3
MIPOL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl815,774,974 - 16,077,325 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1815,709,214 - 16,036,956 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Mipol1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493649411,177,594 - 11,494,252 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MIPOL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl762,515,006 - 62,796,067 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1762,517,130 - 62,796,046 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2767,504,482 - 67,642,272 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MIPOL1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12413,999,908 - 14,399,038 (+)NCBI
ChlSab1.1 Ensembl2413,999,938 - 14,359,882 (+)Ensembl
Mipol1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462495524,761 - 201,529 (+)NCBI

Position Markers
D6Got96  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0678,316,072 - 78,316,271NCBIRnor6.0
Rnor_5.0687,840,113 - 87,840,312UniSTSRnor5.0
RGSC_v3.4677,831,586 - 77,831,786RGDRGSC3.4
RGSC_v3.4677,831,587 - 77,831,786UniSTSRGSC3.4
RGSC_v3.1677,834,712 - 77,834,912RGD
RH 3.4 Map6542.8UniSTS
RH 3.4 Map6542.8RGD
RH 2.0 Map6749.0RGD
AI547902  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0678,448,129 - 78,448,314NCBIRnor6.0
Rnor_5.0687,972,700 - 87,972,885UniSTSRnor5.0
RGSC_v3.4678,158,370 - 78,158,555UniSTSRGSC3.4
Celera673,831,372 - 73,831,557UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)62537030111715717Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)67009971115379601Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62204285484763421Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62204285484763421Rat
1300143Rf14Renal function QTL 142.92renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)63436743680490628Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63626028884763275Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)63810630883106308Rat
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)64167904686679046Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)64167904686679046Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)64167904686679046Rat
634330Pia16Pristane induced arthritis QTL 163.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)648432758108268790Rat
4889848Pur25Proteinuria QTL 25140.003total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)65980306594001333Rat
1558641Cm47Cardiac mass QTL 472.90.001heart mass (VT:0007028)heart wet weight (CMO:0000069)660606431108154445Rat
6893332Cm74Cardiac mass QTL 740.40.64heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)660606431108154445Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)662263348107263348Rat
12801471Schws9Schwannoma susceptibility QTL 9nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)666129520111129520Rat
731173Uae22Urinary albumin excretion QTL 2210.1urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)668781170147991367Rat
2290393Uae37Urinary albumin excretion QTL 370.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)668781170147991367Rat
1641904Alcrsp4Alcohol response QTL 4response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)671206251116206251Rat
1300075Glom7Glomerulus QTL 75.60.0000002kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)675449871120449871Rat
1331789Rf37Renal function QTL 373.224kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)675623277120276465Rat
70196BpQTLcluster7Blood pressure QTL cluster 76.82arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)675623277120623277Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)675623277136143011Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)675623277136426962Rat
2301964Bp323Blood pressure QTL 3234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)67562339384763275Rat
1581550Pur8Proteinuria QTL 8total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)675623393136142742Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)675623393136142742Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)676902247114203334Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:375
Count of miRNA genes:208
Interacting mature miRNAs:248
Transcripts:ENSRNOT00000012282
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 4 14 6 11 6 17 19 36 7
Low 3 39 43 35 8 35 8 11 57 16 5 4 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003750162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005505973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC139950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000012282   ⟹   ENSRNOP00000012282
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl678,172,790 - 78,499,599 (+)Ensembl
RefSeq Acc Id: XM_003750162   ⟹   XP_003750210
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2674,755,314 - 75,090,399 (+)NCBI
Rnor_6.0678,172,842 - 78,503,598 (+)NCBI
Rnor_5.0687,786,106 - 88,030,811 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006225770   ⟹   XP_006225832
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera673,595,098 - 73,886,814 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008764676   ⟹   XP_008762898
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2674,755,361 - 75,090,403 (+)NCBI
Rnor_6.0678,172,842 - 78,506,232 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008764677   ⟹   XP_008762899
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2674,797,440 - 75,090,403 (+)NCBI
Rnor_6.0678,215,314 - 78,503,598 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039113182   ⟹   XP_038969110
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2674,755,378 - 75,090,403 (+)NCBI
RefSeq Acc Id: XM_039113183   ⟹   XP_038969111
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2674,755,388 - 75,090,403 (+)NCBI
RefSeq Acc Id: XM_039113184   ⟹   XP_038969112
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2674,755,361 - 75,042,013 (+)NCBI
RefSeq Acc Id: XM_039113185   ⟹   XP_038969113
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2674,755,361 - 75,090,403 (+)NCBI
RefSeq Acc Id: XM_039113186   ⟹   XP_038969114
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2674,846,010 - 75,090,403 (+)NCBI
RefSeq Acc Id: XM_039113187   ⟹   XP_038969115
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2674,755,384 - 75,090,403 (+)NCBI
RefSeq Acc Id: XM_039113190   ⟹   XP_038969118
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2674,846,010 - 75,090,403 (+)NCBI
RefSeq Acc Id: XM_039113191   ⟹   XP_038969119
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2674,755,361 - 75,041,963 (+)NCBI
RefSeq Acc Id: XM_039113192   ⟹   XP_038969120
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2674,868,061 - 75,090,403 (+)NCBI
RefSeq Acc Id: XM_039113193   ⟹   XP_038969121
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2674,868,059 - 75,090,403 (+)NCBI
RefSeq Acc Id: XM_039113194   ⟹   XP_038969122
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2674,880,313 - 75,090,403 (+)NCBI
RefSeq Acc Id: XR_005505973
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2674,755,361 - 74,938,317 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_003750210   ⟸   XM_003750162
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006225832   ⟸   XM_006225770
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008762898   ⟸   XM_008764676
- Peptide Label: isoform X1
- UniProtKB: F1LUS3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008762899   ⟸   XM_008764677
- Peptide Label: isoform X1
- UniProtKB: F1LUS3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000012282   ⟸   ENSRNOT00000012282
RefSeq Acc Id: XP_038969113   ⟸   XM_039113185
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038969112   ⟸   XM_039113184
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038969119   ⟸   XM_039113191
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038969110   ⟸   XM_039113182
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038969115   ⟸   XM_039113187
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038969111   ⟸   XM_039113183
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038969114   ⟸   XM_039113186
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038969118   ⟸   XM_039113190
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038969121   ⟸   XM_039113193
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038969120   ⟸   XM_039113192
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038969122   ⟸   XM_039113194
- Peptide Label: isoform X10

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694618
Promoter ID:EPDNEW_R5136
Type:initiation region
Name:Mipol1_1
Description:mirror-image polydactyly 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0678,172,808 - 78,172,868EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:6504372 AgrOrtholog
Ensembl Genes ENSRNOG00000009151 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000012282 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000012282 UniProtKB/TrEMBL
InterPro MIPOL1 UniProtKB/TrEMBL
NCBI Gene Mipol1 ENTREZGENE
PANTHER PTHR22089 UniProtKB/TrEMBL
PhenoGen Mipol1 PhenoGen
UniProt F1LUS3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-07-05 Mipol1  mirror-image polydactyly 1      Symbol and Name status set to provisional 70820 PROVISIONAL