LOC100909797 (RT1 class I histocompatibility antigen, AA alpha chain-like) - Rat Genome Database

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Gene: LOC100909797 (RT1 class I histocompatibility antigen, AA alpha chain-like) Rattus norvegicus
Symbol: LOC100909797 (Ensembl: AABR07044364.1)
Name: RT1 class I histocompatibility antigen, AA alpha chain-like
RGD ID: 6501562
Description: Predicted to enable peptide antigen binding activity. Predicted to act upstream of or within several processes, including antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent; positive regulation of leukocyte mediated cytotoxicity; and response to bacterium. Predicted to be located in external side of plasma membrane. Predicted to be part of MHC class Ib protein complex.
Type: protein-coding
RefSeq Status: WITHDRAWN
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Rat AssemblyChrPosition (strand)SourceGenome Browsers
Rnor_6.0203,242,236 - 3,253,995 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl203,242,470 - 3,249,189 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0205,340,515 - 5,348,199 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera20160,982 - 168,811 (+)NCBICelera
Cytogenetic Map20 NCBI


References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8464890   PMID:16299293   PMID:16461341   PMID:16476767  


miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:67
Count of miRNA genes:62
Interacting mature miRNAs:65
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
Medium 1 2 3
Low 2 35 55 39 17 39 3 5 35 35 36 8 3
Below cutoff 8 2 2 2 5 6 39 5 5


Reference Sequences
RefSeq Acc Id: ENSRNOT00000061299   ⟹   ENSRNOP00000058011
RefSeq Status:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl203,246,739 - 3,249,188 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000078110   ⟹   ENSRNOP00000075284
RefSeq Status:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl203,242,470 - 3,249,189 (+)Ensembl
RefSeq Acc Id: XM_008772768   ⟹   XP_008770990
RefSeq Status:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0203,242,236 - 3,253,995 (+)NCBI
Protein Sequences
Protein RefSeqs XP_008770990 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_008770990   ⟸   XM_008772768
RefSeq Acc Id: ENSRNOP00000058011   ⟸   ENSRNOT00000061299
RefSeq Acc Id: ENSRNOP00000075284   ⟸   ENSRNOT00000078110

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LXB3-F1-model_v2 AlphaFold F1LXB3 1-281 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:6501562 AgrOrtholog
Ensembl Genes ENSRNOG00000000787 Ensembl
PhenoGen LOC100909797 PhenoGen

Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-07-05 LOC100909797  RT1 class I histocompatibility antigen, AA alpha chain-like      Symbol and Name status set to provisional 70820 PROVISIONAL