LOC100910078 (spindlin-2-like) - Rat Genome Database

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Gene: LOC100910078 (spindlin-2-like) Rattus norvegicus
Analyze
No known orthologs.
Symbol: LOC100910078
Name: spindlin-2-like
RGD ID: 6500561
Description: Predicted to be involved in gamete generation.
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: MODEL
Previously known as: AABR07053236.1; LOC302228; similar to Spindlin-like protein 2 (SPIN-2); Y-linked testis-specific protein 1-like
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8111,142,494 - 1,145,297 (+)NCBIGRCr8
mRatBN7.231,529,052 - 1,592,677 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl31,529,712 - 1,534,661 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.02158,997,695 - 159,175,419 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl396,552,062 - 96,552,715 (+)NCBIRnor6.0rn6Rnor6.0
Rnor_5.02178,469,307 - 178,543,153 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Cytogenetic Map3p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IBA)
nucleoplasm  (IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in LOC100910078
3430 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70202Alc19Alcohol consumption QTL 192.5drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)3127494778Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3131158234Rat
631831Alc8Alcohol consumption QTL 82.7consumption behavior trait (VT:0002069)calculated ethanol drink intake rate (CMO:0001615)3133230976Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)diastolic blood pressure (CMO:0000005)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)pulse pressure (CMO:0000292)3133278763Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3133278763Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)3136847613Rat
2312664Scl62Serum cholesterol level QTL 620.05blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)3138710544Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3139874793Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat


Expression


Sequence


RefSeq Acc Id: ENSRNOT00000071530   ⟹   ENSRNOP00000064896
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl31,529,712 - 1,534,661 (-)Ensembl
RefSeq Acc Id: XM_039106106   ⟹   XP_038962034
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.231,529,052 - 1,534,654 (-)NCBI
RefSeq Acc Id: XM_039106107   ⟹   XP_038962035
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.231,531,480 - 1,534,654 (-)NCBI
RefSeq Acc Id: XM_039106108   ⟹   XP_038962036
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.231,531,477 - 1,592,677 (-)NCBI
Protein Sequences
Ensembl Protein ENSRNOP00000064896.3
RefSeq Acc Id: XP_038962034   ⟸   XM_039106106
RefSeq Acc Id: XP_038962036   ⟸   XM_039106108
RefSeq Acc Id: XP_038962035   ⟸   XM_039106107
RefSeq Acc Id: ENSRNOP00000064896   ⟸   ENSRNOT00000071530

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0R657-F1-model_v2 AlphaFold M0R657 1-217 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:6500561 AgrOrtholog
BioCyc Gene G2FUF-50660 BioCyc
Ensembl Genes ENSRNOG00000049619 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000071530.3 UniProtKB/TrEMBL
Gene3D-CATH 2.80.10.70 UniProtKB/TrEMBL
InterPro SPIN/Ssty UniProtKB/TrEMBL
  SPIN/Ssty_sf UniProtKB/TrEMBL
NCBI Gene LOC100910078 ENTREZGENE
PANTHER (CLONE BALB10N)-RELATED UniProtKB/TrEMBL
  PTHR10405 UniProtKB/TrEMBL
Pfam Spin-Ssty UniProtKB/TrEMBL
PhenoGen LOC100910078 PhenoGen
RatGTEx ENSRNOG00000049619 RatGTEx
UniProt M0R657_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC100910078  spindlin-2-like  AABR07053236.1    Data merged from RGD:15005787 737654 PROVISIONAL
2021-03-09 LOC100910078  spindlin-2-like  LOC302228  similar to Spindlin-like protein 2 (SPIN-2)  Data merged from RGD:1590908 737654 PROVISIONAL
2019-11-08 AABR07053236.1        Symbol and Name status set to provisional 45752 PROVISIONAL
2012-07-05 LOC100910078  spindlin-2-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC302228  similar to Spindlin-like protein 2 (SPIN-2)      Symbol and Name status set to provisional 70820 PROVISIONAL