LOC100911047 (X-linked lymphocyte-regulated protein 3A-like) - Rat Genome Database

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Gene: LOC100911047 (X-linked lymphocyte-regulated protein 3A-like) Rattus norvegicus
Analyze
No known orthologs.
Symbol: LOC100911047
Name: X-linked lymphocyte-regulated protein 3A-like
RGD ID: 6495416
Description: Orthologous to human FAM9A (family with sequence similarity 9 member A).
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X155,990,156 - 156,001,332 (-)NCBIGRCr8
mRatBN7.2X150,935,437 - 150,947,126 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX150,935,511 - 150,946,614 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01147,000,037 - 147,012,436 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1147,003,850 - 147,011,657 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01153,296,831 - 153,306,982 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Cytogenetic MapXq37NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in LOC100911047
4 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10059603Bw174Body weight QTL 1743.40.025body mass (VT:0001259)body weight (CMO:0000012)X113937816152453651Rat
634346Insul4Insulin level QTL 40blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)X126975089152453651Rat

Markers in Region
RH144524  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X150,938,906 - 150,939,088 (-)MAPPERmRatBN7.2
mRatBN7.2X150,938,906 - 150,939,088 (+)MAPPERmRatBN7.2
mRatBN7.2X150,975,404 - 150,975,586 (-)MAPPERmRatBN7.2
mRatBN7.2X150,975,404 - 150,975,586 (+)MAPPERmRatBN7.2
Rnor_6.01147,005,024 - 147,005,205NCBIRnor6.0
Rnor_6.01147,045,454 - 147,045,635NCBIRnor6.0
Rnor_5.01153,340,273 - 153,340,454UniSTSRnor5.0
Rnor_5.01153,300,179 - 153,300,360UniSTSRnor5.0
RGSC_v3.4X159,115,597 - 159,115,778UniSTSRGSC3.4
Cytogenetic MapXq37UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system exocrine system hepatobiliary system musculoskeletal system nervous system reproductive system respiratory system
High
Medium
Low 1
Below cutoff 1 1 1 1 1 2 6 3

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000074398   ⟹   ENSRNOP00000067701
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1147,003,850 - 147,011,657 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000075736   ⟹   ENSRNOP00000065547
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX150,935,511 - 150,946,614 (+)Ensembl
RefSeq Acc Id: XM_006229628   ⟹   XP_006229690
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X155,990,156 - 156,001,332 (-)NCBI
mRatBN7.2X150,935,437 - 150,947,126 (+)NCBI
Rnor_6.01147,000,037 - 147,012,436 (+)NCBI
Rnor_5.01153,296,831 - 153,306,982 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_006229690 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000065547
  ENSRNOP00000065547.3
  ENSRNOP00000067701.3
Reference Protein Sequences
RefSeq Acc Id: XP_006229690   ⟸   XM_006229628
- UniProtKB: M0RDK0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000067701   ⟸   ENSRNOT00000074398
RefSeq Acc Id: ENSRNOP00000065547   ⟸   ENSRNOT00000075736
Protein Domains
XLR/SYCP3/FAM9

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0RDK0-F1-model_v2 AlphaFold M0RDK0 1-225 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:6495416 AgrOrtholog
BioCyc Gene G2FUF-687 BioCyc
Ensembl Genes ENSRNOG00000047630 Ensembl
  ENSRNOG00000064693 UniProtKB/TrEMBL
  ENSRNOG00000068104 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000074398.3 UniProtKB/TrEMBL
  ENSRNOT00000075736.3 UniProtKB/TrEMBL
InterPro Cor1/Xlr/Xmr UniProtKB/TrEMBL
KEGG Report rno:100911047 UniProtKB/TrEMBL
  rno:690041 UniProtKB/TrEMBL
NCBI Gene LOC100911047 ENTREZGENE
PANTHER X-LINKED LYMPHOCYTE-REGULATED PROTEIN 3A-RELATED UniProtKB/TrEMBL
  XLR/SCP3/FAM9 UniProtKB/TrEMBL
Pfam Cor1 UniProtKB/TrEMBL
PhenoGen LOC100911047 PhenoGen
RatGTEx ENSRNOG00000047630 RatGTEx
  ENSRNOG00000064693 RatGTEx
  ENSRNOG00000068104 RatGTEx
UniProt M0RDK0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-07-05 LOC100911047  X-linked lymphocyte-regulated protein 3A-like      Symbol and Name status set to provisional 70820 PROVISIONAL