Cbx2-ps1 (chromobox 2, pseudogene 1) - Rat Genome Database

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Gene: Cbx2-ps1 (chromobox 2, pseudogene 1) Rattus norvegicus
Analyze
Symbol: Cbx2-ps1
Name: chromobox 2, pseudogene 1
RGD ID: 6493479
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: chromobox protein homolog 2-like; LOC100911342; LOC363722; similar to Chromobox protein homolog 2 (Modifier 3 protein) (M33)
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81117,545,071 - 17,546,593 (-)NCBIGRCr8
mRatBN7.2114,098,598 - 4,100,120 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.0113,039,441 - 3,040,963 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0113,018,886 - 3,065,547 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4113,813,191 - 3,814,713 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera114,070,325 - 4,071,847 (-)NCBICelera
Cytogenetic Map11p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Cbx2-ps1
4 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634341Bw121Body weight QTL 1213.56abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)11121836709Rat
1598842Glom10Glomerulus QTL 103.4kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)11135331169Rat
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_003751001   ⟹   XP_003751049
Type: CODING
Position: No map positions available.
RefSeq Acc Id: XM_003752468   ⟹   XP_003752516
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera114,070,325 - 4,071,847 (-)NCBI
RefSeq Acc Id: XM_006247979   ⟹   XP_006248041
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_5.0113,018,886 - 3,065,547 (-)NCBI

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-22299 BioCyc
NCBI Gene LOC100911342 ENTREZGENE
PhenoGen Cbx2-ps1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Cbx2-ps1  chromobox 2, pseudogene 1  LOC100911342  chromobox protein homolog 2-like  Symbol and Name Changed 1299863 APPROVED
2021-03-09 LOC100911342  chromobox protein homolog 2-like  LOC363722  similar to Chromobox protein homolog 2 (Modifier 3 protein) (M33)  Data merged from RGD:1586141 737654 PROVISIONAL
2012-07-05 LOC100911342  chromobox protein homolog 2-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC363722  similar to Chromobox protein homolog 2 (Modifier 3 protein) (M33)      Symbol and Name status set to provisional 70820 PROVISIONAL