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Gene: LOC100911486 (multiple epidermal growth factor-like domains protein 6-like) Rattus norvegicus
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Symbol: LOC100911486
Name: multiple epidermal growth factor-like domains protein 6-like
Description: Predicted to have calcium ion binding activity. Orthologous to human MEGF6 (multiple EGF like domains 6).
Type: protein-coding
RefSeq Status: MODEL
Also known as: multiple epidermal growth factor-like domains protein 6
Orthologs:
No known orthologs. homologs ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Note: LOC100911486 appears to be a duplicate placement of Megf6 (GeneID: 65049) on Rnor_6.0 that is not present on Rn_Celera (Annotation Release 105) and not supported by synteny in mouse and human. BLASTing LOC100911486 XM_008764417.1 and Megf6 NM_022955.1 against the rat genome shows best hits to NC_005104.4 on Rnor_6.0 at locations where LOC100911486 and Megf6 are annotated and to AC_000073.1 on Rn_Celera only at location where Megf6 is annotated (Annotation Release 105). 2-sequence BLAST of Megf6 NM_022955.1 against LOC100911486 XM_008764417.1 shows high sequence identity (79% coverage, 99% identity). Although five components underlie LOC100911486, AABR07050625.1 includes the genomic region with the majority of exons that comprise XM_008764417.1. BLASTing AABR07050625.1 against the rat genome shows best hits to NC_005104.4 on Rnor_6.0 at the location where LOC100911486 is annotated (hitting itself) and the location where Megf6 is annotated. 2-sequence BLAST of AABR07050625.1 against Megf6 underlying component AABR07050628.1 shows 99% sequence identity across stretch of ~25 kb. [26 Mar 2015]
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.05171,478,247 - 171,571,810 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5171,472,273 - 171,620,947 (+)Ensembl
Rnor_5.05174,953,888 - 175,048,919 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations
References - curated

Genomics

QTLs in Region (Rnor_6.0)

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on LOC100911486
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 6492904
Created: 2012-07-05
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.