LOC100911511 (homeobox protein Hox-A6-like)

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Gene: LOC100911511 (homeobox protein Hox-A6-like) Rattus norvegicus

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General
Array IDs
References

Symbol:

LOC100911511

Name:

homeobox protein Hox-A6-like

Description:

ENCODES a protein that exhibits DNA-binding transcription factor activity (inferred); INVOLVED IN regulation of transcription by RNA polymerase II (inferred); regulation of transcription, DNA-templated (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Also known as:

homeobox protein Hox-A6

Orthologs:

No known orthologs.

homologs ...

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Other homologs ²				less info ...
Homo sapiens (human):	HOXA6 (homeobox A6)	HGNC	HomoloGene

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Cytogenetic Map	4		NCBI

Annotation (Toggle Annotation Detail/Summary View)

Gene Ontology Annotations

Biological Process

Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
anterior/posterior pattern specification		IBA	FB:FBgn0000014 more ...	13792537	PMID:21873635	GO_Central
anterior/posterior pattern specification		IBA	FB:FBgn0000014 more ...	13792537	PMID:21873635	GO_Central
regulation of transcription by RNA polymerase II		IEA	GO:0000981	1600115	GO_REF:0000108	GOC	GO_REF:0000108
regulation of transcription, DNA-templated		IEA	InterPro:IPR001827 more ...	1600115	GO_REF:0000002	InterPro	GO_REF:0000002

Cellular Component

Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
nucleus		IBA	FB:FBgn0000014 more ...	13792537	PMID:21873635	GO_Central
nucleus		IBA	FB:FBgn0000014 more ...	13792537	PMID:21873635	GO_Central

Molecular Function

Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
DNA-binding transcription factor activity		IEA	InterPro:IPR001827, InterPro:IPR017995	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
DNA-binding transcription factor activity, RNA polymerase II-specific		IBA	FB:FBgn0000014 more ...	13792537	PMID:21873635	GO_Central
RNA polymerase II cis-regulatory region sequence-specific DNA binding		IBA	FB:FBgn0001077 more ...	13792537	PMID:21873635	GO_Central

Gene Ontology Annotations

Biological Process

	anterior/posterior pattern specification (IBA)
	regulation of transcription by RNA polymerase II (IEA)

regulation of transcription, DNA-templated (IEA)

Cellular Component

nucleus (IBA)

Molecular Function

	DNA-binding transcription factor activity (IEA)
	DNA-binding transcription factor activity, RNA polymerase II-specific (IBA)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA)

References - curated

1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	RGD automated import pipeline for gene-chemical interactions

Genomics

Position Markers

UniSTS:467537

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	4	82,176,977 - 82,177,311	NCBI	Rnor6.0
Rnor_6.0	4	82,262,772 - 82,263,106	NCBI	Rnor6.0
Rnor_5.0	4	146,929,603 - 146,929,937	UniSTS	Rnor5.0
Rnor_5.0	4	146,843,808 - 146,844,142	UniSTS	Rnor5.0
RGSC_v3.4	4	80,508,300 - 80,508,634	UniSTS	RGSC3.4
Celera	4	76,199,120 - 76,199,454	UniSTS
Cytogenetic Map	4	q24	UniSTS

REN100533

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	4	82,175,231 - 82,175,491	NCBI	Rnor6.0
Rnor_6.0	4	82,261,026 - 82,261,286	NCBI	Rnor6.0
Rnor_5.0	4	146,927,857 - 146,928,117	UniSTS	Rnor5.0
Rnor_5.0	4	146,842,062 - 146,842,322	UniSTS	Rnor5.0
RGSC_v3.4	4	80,506,554 - 80,506,814	UniSTS	RGSC3.4
Celera	4	76,197,374 - 76,197,634	UniSTS
Cytogenetic Map	4	q24	UniSTS

Hoxa6

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	4	82,177,248 - 82,177,315	NCBI	Rnor6.0
Rnor_6.0	4	82,263,043 - 82,263,110	NCBI	Rnor6.0
Rnor_5.0	4	146,844,079 - 146,844,146	UniSTS	Rnor5.0
Rnor_5.0	4	146,929,874 - 146,929,941	UniSTS	Rnor5.0
Celera	4	76,199,391 - 76,199,458	UniSTS
Cytogenetic Map	4	q24	UniSTS

Expression

Sequence

Nucleotide Sequences

RefSeq Transcripts	XM_003752179	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006257703	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC122669	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Protein Sequences

Protein RefSeqs	XP_003752227	(Get FASTA)	NCBI Sequence Viewer
	XP_006257765	(Get FASTA)	NCBI Sequence Viewer

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSRNOG00000048917	UniProtKB/TrEMBL
	ENSRNOG00000060066	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000008542	UniProtKB/TrEMBL
	ENSRNOP00000064985	UniProtKB/TrEMBL
	ENSRNOP00000070190	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOP00000075013	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000008542	UniProtKB/TrEMBL
	ENSRNOT00000074452	UniProtKB/TrEMBL
	ENSRNOT00000080322	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOT00000082933	UniProtKB/TrEMBL
InterPro	Homeobox_antennapedia	UniProtKB/TrEMBL
	Homeobox_Antennapedia_CS	UniProtKB/TrEMBL
	Homeobox_CS	UniProtKB/TrEMBL
	Homeobox_dom	UniProtKB/TrEMBL
	Homeobox_metazoa	UniProtKB/TrEMBL
	Homeodomain-like	UniProtKB/TrEMBL
KEGG Report	rno:100911511	UniProtKB/TrEMBL
	rno:685732	UniProtKB/TrEMBL
NCBI Gene	LOC100911511	ENTREZGENE
Pfam	Homeobox	UniProtKB/TrEMBL
PhenoGen	LOC100911511	PhenoGen
PRINTS	ANTENNAPEDIA	UniProtKB/TrEMBL
	HOMEOBOX	UniProtKB/TrEMBL
PROSITE	ANTENNAPEDIA	UniProtKB/TrEMBL
	HOMEOBOX_1	UniProtKB/TrEMBL
	HOMEOBOX_2	UniProtKB/TrEMBL
SMART	HOX	UniProtKB/TrEMBL
Superfamily-SCOP	SSF46689	UniProtKB/TrEMBL
UniProt	G3V6T4	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2012-07-05	LOC100911511	homeobox protein Hox-A6-like			Symbol and Name status set to provisional	70820	PROVISIONAL

More on LOC100911511
	Alliance Gene
	NCBI Gene
	Ensembl Gene
	NCBI Genome Data Viewer

RGD Object Information
RGD ID:	6492270
Created:	2012-07-05
Species:	Rattus norvegicus
Last Modified:	2019-11-27
Status:	ACTIVE

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.