LOC100911511 (homeobox protein Hox-A6-like) - Rat Genome Database

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Gene: LOC100911511 (homeobox protein Hox-A6-like) Rattus norvegicus
Analyze
No known orthologs.
Symbol: LOC100911511
Name: homeobox protein Hox-A6-like
RGD ID: 6492270
Description:
Type: protein-coding
Also known as: homeobox protein Hox-A6
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Genome Annotation Status: not in current annotation release
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0 Ensembl482,173,293 - 82,263,302 (-)EnsemblRnor6.0rn6Rnor6.0
Cytogenetic Map4 NCBI


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA)

References


Genomics

Position Markers
UniSTS:467537  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0482,176,977 - 82,177,311NCBIRnor6.0
Rnor_6.0482,262,772 - 82,263,106NCBIRnor6.0
Rnor_5.04146,929,603 - 146,929,937UniSTSRnor5.0
Rnor_5.04146,843,808 - 146,844,142UniSTSRnor5.0
RGSC_v3.4480,508,300 - 80,508,634UniSTSRGSC3.4
Celera476,199,120 - 76,199,454UniSTS
Cytogenetic Map4q24UniSTS
REN100533  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0482,175,231 - 82,175,491NCBIRnor6.0
Rnor_6.0482,261,026 - 82,261,286NCBIRnor6.0
Rnor_5.04146,927,857 - 146,928,117UniSTSRnor5.0
Rnor_5.04146,842,062 - 146,842,322UniSTSRnor5.0
RGSC_v3.4480,506,554 - 80,506,814UniSTSRGSC3.4
Celera476,197,374 - 76,197,634UniSTS
Cytogenetic Map4q24UniSTS
Hoxa6  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0482,177,248 - 82,177,315NCBIRnor6.0
Rnor_6.0482,263,043 - 82,263,110NCBIRnor6.0
Rnor_5.04146,844,079 - 146,844,146UniSTSRnor5.0
Rnor_5.04146,929,874 - 146,929,941UniSTSRnor5.0
Celera476,199,391 - 76,199,458UniSTS
Cytogenetic Map4q24UniSTS


Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide AC122669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Protein Sequences
Protein Domains
Homeobox

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000048917 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00000060066 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000008542 UniProtKB/TrEMBL
  ENSRNOP00000064985 UniProtKB/TrEMBL
  ENSRNOP00000070190 UniProtKB/TrEMBL
  ENSRNOP00000075013 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000008542 UniProtKB/TrEMBL
  ENSRNOT00000074452 UniProtKB/TrEMBL
  ENSRNOT00000080322 UniProtKB/TrEMBL
  ENSRNOT00000082933 UniProtKB/TrEMBL
InterPro Homeobox_antennapedia UniProtKB/TrEMBL
  Homeobox_Antennapedia_CS UniProtKB/TrEMBL
  Homeobox_CS UniProtKB/TrEMBL
  Homeobox_dom UniProtKB/TrEMBL
  Homeobox_metazoa UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/TrEMBL
KEGG Report rno:100911511 UniProtKB/TrEMBL
  rno:685732 UniProtKB/TrEMBL
NCBI Gene LOC100911511 ENTREZGENE
Pfam Homeobox UniProtKB/TrEMBL
PhenoGen LOC100911511 PhenoGen
PRINTS ANTENNAPEDIA UniProtKB/TrEMBL
  HOMEOBOX UniProtKB/TrEMBL
PROSITE ANTENNAPEDIA UniProtKB/TrEMBL
  HOMEOBOX_1 UniProtKB/TrEMBL
  HOMEOBOX_2 UniProtKB/TrEMBL
SMART HOX UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/TrEMBL
UniProt G3V6T4_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-07-05 LOC100911511  homeobox protein Hox-A6-like      Symbol and Name status set to provisional 70820 PROVISIONAL