Erich6b (glutamate-rich 6B) - Rat Genome Database

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Gene: Erich6b (glutamate-rich 6B) Rattus norvegicus
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Symbol: Erich6b
Name: glutamate-rich 6B
RGD ID: 6491099
Description: Orthologous to human ERICH6B (glutamate rich 6B); INTERACTS WITH 4-hydroxyphenyl retinamide (ortholog); benzo[a]pyrene (ortholog); bisphenol A (ortholog).
Type: protein-coding
RefSeq Status: MODEL
Previously known as: glutamate-rich protein 6B; hCG29285-like; LOC100360314; LOC100911795; uncharacterized LOC100911795
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81557,384,509 - 57,423,543 (+)NCBIGRCr8
mRatBN7.21550,979,066 - 51,014,394 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.01557,691,875 - 57,754,684 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01561,401,695 - 61,460,759 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41556,523,651 - 56,542,553 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1550,585,979 - 50,648,431 (+)NCBICelera
Cytogenetic Map15q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Erich6b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81557,384,509 - 57,423,543 (+)NCBIGRCr8
mRatBN7.21550,979,066 - 51,014,394 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.01557,691,875 - 57,754,684 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01561,401,695 - 61,460,759 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41556,523,651 - 56,542,553 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1550,585,979 - 50,648,431 (+)NCBICelera
Cytogenetic Map15q11NCBI
ERICH6B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381345,541,294 - 45,615,739 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1345,534,522 - 45,615,739 (-)EnsemblGRCh38hg38GRCh38
GRCh371346,115,429 - 46,189,874 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361345,013,433 - 45,087,875 (-)NCBINCBI36Build 36hg18NCBI36
Celera1327,170,108 - 27,244,549 (-)NCBICelera
Cytogenetic Map13q14.13NCBI
HuRef1326,911,668 - 26,986,113 (-)NCBIHuRef
CHM1_11346,084,372 - 46,158,786 (-)NCBICHM1_1
T2T-CHM13v2.01344,762,627 - 44,837,047 (-)NCBIT2T-CHM13v2.0
Erich6b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391475,879,662 - 75,934,165 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1475,879,689 - 75,934,157 (+)EnsemblGRCm39 Ensembl
GRCm381475,642,222 - 75,696,725 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1475,642,249 - 75,696,717 (+)EnsemblGRCm38mm10GRCm38
MGSCv371476,042,066 - 76,066,944 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361474,376,414 - 74,401,292 (+)NCBIMGSCv36mm8
Celera1473,144,181 - 73,168,998 (+)NCBICelera
Cytogenetic Map14D3NCBI
cM Map1440.28NCBI
Erich6b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555183,279,721 - 3,333,159 (-)NCBIChiLan1.0ChiLan1.0
ERICH6B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21445,768,880 - 45,843,314 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11336,822,921 - 36,897,573 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01327,409,374 - 27,483,814 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
ERICH6B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1225,485,832 - 5,542,217 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl225,485,891 - 5,542,216 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha225,474,925 - 5,531,318 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0225,603,799 - 5,660,025 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl225,603,858 - 5,660,024 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1225,385,612 - 5,442,002 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0225,448,778 - 5,504,943 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0225,454,151 - 5,510,550 (+)NCBIUU_Cfam_GSD_1.0
Erich6b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945155,737,589 - 155,780,600 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936857158,921 - 202,872 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ERICH6B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11121,674,478 - 21,754,947 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21122,021,206 - 22,052,091 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ERICH6B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1323,625,698 - 23,693,586 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl323,625,790 - 23,674,020 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605720,377,458 - 20,432,097 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Erich6b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247489,446,611 - 9,492,620 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Erich6b
286 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)151059608955596089Rat
2300167Bmd63Bone mineral density QTL 635.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2300173Bmd62Bone mineral density QTL 6212.80.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2293688Bss29Bone structure and strength QTL 295.310.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)151111114256111142Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151249614165205939Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152211793367117933Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)152803066582262678Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)152803066582262678Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)152803066582262678Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
2293691Bmd37Bone mineral density QTL 376.60.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)153361105871477291Rat
2293686Bmd36Bone mineral density QTL 367.40.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)153361105871477291Rat
1598828Glom14Glomerulus QTL 142.5kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)153405413979054139Rat
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)154063126898288169Rat
724545Niddm54Non-insulin dependent diabetes mellitus QTL 540.02blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)155079449473699215Rat

Markers in Region
AU046551  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01557,714,367 - 57,714,634NCBIRnor6.0
Rnor_5.01561,422,758 - 61,423,025UniSTSRnor5.0
RGSC_v3.41556,508,008 - 56,508,275UniSTSRGSC3.4
Celera1550,608,761 - 50,609,028UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008770008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_063274893   ⟹   XP_063130963
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81557,384,509 - 57,423,543 (+)NCBI
RefSeq Acc Id: XM_063274894   ⟹   XP_063130964
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81557,391,299 - 57,423,543 (+)NCBI
Protein Sequences
Protein RefSeqs XP_063130963 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130964 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_063130963   ⟸   XM_063274893
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063130964   ⟸   XM_063274894
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:6491099 AgrOrtholog
BioCyc Gene G2FUF-13118 BioCyc
NCBI Gene LOC100911795 ENTREZGENE
PhenoGen Erich6b PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-07-29 Erich6b  glutamate-rich 6B  LOC100360314  hCG29285-like  Data merged from RGD:2322338 737654 PROVISIONAL
2015-06-23 Erich6b  glutamate-rich 6B  LOC100911795  uncharacterized LOC100911795  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-07-05 LOC100911795  uncharacterized LOC100911795      Symbol and Name status set to provisional 70820 PROVISIONAL
2010-05-06 LOC100360314  hCG29285-like      Symbol and Name status set to provisional 70820 PROVISIONAL