Mia2 (MIA SH3 domain ER export factor 2) - Rat Genome Database
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Gene: Mia2 (MIA SH3 domain ER export factor 2) Rattus norvegicus
Analyze
Symbol: Mia2
Name: MIA SH3 domain ER export factor 2
RGD ID: 6488546
Description: Predicted to have cargo receptor activity. Predicted to be involved in several processes, including lipid homeostasis; protein localization to endoplasmic reticulum exit site; and protein transport. Predicted to localize to endoplasmic reticulum exit site and endoplasmic reticulum membrane. Orthologous to human MIA2 (MIA SH3 domain ER export factor 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: cTAGE family member 5; CTAGE family member 5, ER export factor; CTAGE family, member 5; Ctage5; cutaneous T-cell lymphoma-associated antigen 5 homolog; LOC100912115; LOC299078; melanoma inhibitory activity 2; melanoma inhibitory activity protein 2; meningioma expressed antigen 6 (coiled-coil proline-rich); Mgea6
RGD Orthologs
Human
Mouse
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2676,787,508 - 76,885,246 (+)NCBI
Rnor_6.0 Ensembl680,218,880 - 80,286,546 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0680,188,721 - 80,286,918 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0689,744,546 - 89,812,704 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera675,547,780 - 75,640,268 (+)NCBICelera
Cytogenetic Map6q23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:15632090   PMID:19946888   PMID:21525241   PMID:21807889   PMID:25202031   PMID:27138255   PMID:27170179   PMID:28442536  


Genomics

Comparative Map Data
Mia2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2676,787,508 - 76,885,246 (+)NCBI
Rnor_6.0 Ensembl680,218,880 - 80,286,546 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0680,188,721 - 80,286,918 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0689,744,546 - 89,812,704 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera675,547,780 - 75,640,268 (+)NCBICelera
Cytogenetic Map6q23NCBI
MIA2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1439,230,231 - 39,388,513 (+)EnsemblGRCh38hg38GRCh38
GRCh381439,233,915 - 39,388,522 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371439,703,119 - 39,857,726 (+)NCBIGRCh37GRCh37hg19GRCh37
GRCh371439,734,476 - 39,820,397 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361438,804,227 - 38,890,148 (+)NCBINCBI36hg18NCBI36
Build 341438,806,100 - 38,890,333NCBI
Celera1419,599,121 - 19,684,807 (+)NCBI
Cytogenetic Map14q21.1NCBI
HuRef1419,848,252 - 19,934,286 (+)NCBIHuRef
CHM1_11439,733,093 - 39,818,981 (+)NCBICHM1_1
Mia2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391259,142,368 - 59,237,006 (+)NCBIGRCm39mm39
GRCm381259,095,582 - 59,190,220 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1259,095,799 - 59,191,583 (+)EnsemblGRCm38mm10GRCm38
MGSCv371260,196,787 - 60,210,117 (+)NCBIGRCm37mm9NCBIm37
MGSCv361260,013,812 - 60,027,142 (+)NCBImm8
Celera1260,256,085 - 60,270,002 (+)NCBICelera
Cytogenetic Map12C1NCBI
cM Map1226.0NCBI
MIA2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11438,361,636 - 38,477,841 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1438,361,828 - 38,513,998 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01420,006,513 - 20,123,814 (+)NCBIMhudiblu_PPA_v0panPan3
MIA2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1817,390,738 - 17,482,421 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Mia2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493649412,805,990 - 12,911,754 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MIA2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11169,777,581 - 169,868,308 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21188,512,962 - 188,579,797 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MIA2
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12415,997,817 - 16,127,881 (+)NCBI
Mia2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248138,650,615 - 8,776,264 (+)NCBI

Position Markers
AW533124  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0680,228,571 - 80,228,722NCBIRnor6.0
Rnor_5.0689,754,357 - 89,754,508UniSTSRnor5.0
RGSC_v3.4679,828,553 - 79,828,704UniSTSRGSC3.4
Celera675,586,839 - 75,586,990UniSTS
RH 3.4 Map6548.19UniSTS
Cytogenetic Map6q23UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)62537030111715717Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)67009971115379601Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62204285484763421Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62204285484763421Rat
1300143Rf14Renal function QTL 142.92renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)63436743680490628Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63626028884763275Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)63810630883106308Rat
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)64167904686679046Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)64167904686679046Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)64167904686679046Rat
634330Pia16Pristane induced arthritis QTL 163.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)648432758108268790Rat
4889848Pur25Proteinuria QTL 25140.003total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)65980306594001333Rat
1558641Cm47Cardiac mass QTL 472.90.001heart mass (VT:0007028)heart wet weight (CMO:0000069)660606431108154445Rat
6893332Cm74Cardiac mass QTL 740.40.64heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)660606431108154445Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)662263348107263348Rat
12801471Schws9Schwannoma susceptibility QTL 9nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)666129520111129520Rat
731173Uae22Urinary albumin excretion QTL 2210.1urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)668781170147991367Rat
2290393Uae37Urinary albumin excretion QTL 370.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)668781170147991367Rat
1641904Alcrsp4Alcohol response QTL 4response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)671206251116206251Rat
1300075Glom7Glomerulus QTL 75.60.0000002kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)675449871120449871Rat
1331789Rf37Renal function QTL 373.224kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)675623277120276465Rat
70196BpQTLcluster7Blood pressure QTL cluster 76.82arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)675623277120623277Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)675623277136143011Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)675623277136426962Rat
2301964Bp323Blood pressure QTL 3234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)67562339384763275Rat
1581550Pur8Proteinuria QTL 8total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)675623393136142742Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)675623393136142742Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)676902247114203334Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:46
Count of miRNA genes:20
Interacting mature miRNAs:22
Transcripts:ENSRNOT00000006995, ENSRNOT00000059318
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 10 74 35 41 11 8
Low 1
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001371341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001371347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003750164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003750165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006240128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006240132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC079389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000006995   ⟹   ENSRNOP00000006995
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl680,218,880 - 80,286,546 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000059318   ⟹   ENSRNOP00000056080
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl680,220,547 - 80,286,546 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000077435   ⟹   ENSRNOP00000075271
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl680,220,547 - 80,286,546 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000086221   ⟹   ENSRNOP00000072272
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl680,220,547 - 80,286,546 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000089010   ⟹   ENSRNOP00000070325
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl680,220,547 - 80,286,546 (+)Ensembl
RefSeq Acc Id: NM_001371341   ⟹   NP_001358270
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2676,787,508 - 76,885,211 (+)NCBI
RefSeq Acc Id: NM_001371347   ⟹   NP_001358276
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2676,817,556 - 76,885,211 (+)NCBI
RefSeq Acc Id: XM_003750163   ⟹   XP_003750211
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0680,218,745 - 80,286,918 (+)NCBI
Rnor_5.0689,744,546 - 89,812,704 (+)NCBI
Sequence:
RefSeq Acc Id: XM_003750164   ⟹   XP_003750212
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2676,817,548 - 76,885,246 (+)NCBI
Rnor_6.0680,218,745 - 80,286,918 (+)NCBI
Rnor_5.0689,744,546 - 89,812,704 (+)NCBI
Sequence:
RefSeq Acc Id: XM_003750165   ⟹   XP_003750213
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2676,819,006 - 76,885,246 (+)NCBI
Rnor_6.0680,220,434 - 80,286,918 (+)NCBI
Rnor_5.0689,744,546 - 89,812,704 (+)NCBI
Sequence:
RefSeq Acc Id: XM_003754175   ⟹   XP_003754223
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera675,577,011 - 75,640,268 (+)NCBI
Sequence:
RefSeq Acc Id: XM_003754176   ⟹   XP_003754224
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera675,577,011 - 75,640,268 (+)NCBI
Sequence:
RefSeq Acc Id: XM_003754177   ⟹   XP_003754225
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera675,578,700 - 75,640,268 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006225775   ⟹   XP_006225837
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera675,578,701 - 75,640,268 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006225779   ⟹   XP_006225841
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera675,578,701 - 75,640,268 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006240128   ⟹   XP_006240190
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2676,819,006 - 76,885,246 (+)NCBI
Rnor_6.0680,220,435 - 80,286,918 (+)NCBI
Rnor_5.0689,744,546 - 89,812,704 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006240132   ⟹   XP_006240194
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2676,819,005 - 76,885,246 (+)NCBI
Rnor_6.0680,220,435 - 80,286,918 (+)NCBI
Rnor_5.0689,744,546 - 89,812,704 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008764679   ⟹   XP_008762901
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2676,787,524 - 76,885,246 (+)NCBI
Rnor_6.0680,188,721 - 80,286,918 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008764680   ⟹   XP_008762902
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2676,787,524 - 76,885,246 (+)NCBI
Rnor_6.0680,188,721 - 80,286,918 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008776247   ⟹   XP_008774469
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera675,547,780 - 75,640,268 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008776248   ⟹   XP_008774470
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera675,547,780 - 75,640,268 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017594449   ⟹   XP_017449938
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0680,188,722 - 80,286,918 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017594450   ⟹   XP_017449939
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2676,787,525 - 76,885,246 (+)NCBI
Rnor_6.0680,188,722 - 80,286,918 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017594451   ⟹   XP_017449940
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2676,787,525 - 76,885,246 (+)NCBI
Rnor_6.0680,188,721 - 80,286,918 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017594452   ⟹   XP_017449941
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2676,787,525 - 76,885,246 (+)NCBI
Rnor_6.0680,188,721 - 80,286,918 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017594453   ⟹   XP_017449942
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2676,787,524 - 76,885,246 (+)NCBI
Rnor_6.0680,188,722 - 80,286,918 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017594454   ⟹   XP_017449943
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2676,819,006 - 76,885,246 (+)NCBI
Rnor_6.0680,220,435 - 80,286,918 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017594455   ⟹   XP_017449944
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2676,818,573 - 76,885,246 (+)NCBI
Rnor_6.0680,219,533 - 80,286,918 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017594456   ⟹   XP_017449945
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2676,818,575 - 76,885,246 (+)NCBI
Rnor_6.0680,219,533 - 80,286,918 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017594457   ⟹   XP_017449946
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2676,817,548 - 76,885,246 (+)NCBI
Rnor_6.0680,218,744 - 80,286,918 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017603227   ⟹   XP_017458716
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera675,547,781 - 75,640,268 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017603228   ⟹   XP_017458717
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera675,547,781 - 75,640,268 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017603229   ⟹   XP_017458718
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera675,547,780 - 75,640,268 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017603230   ⟹   XP_017458719
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera675,547,780 - 75,640,268 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017603231   ⟹   XP_017458720
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera675,547,781 - 75,640,268 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017603232   ⟹   XP_017458721
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera675,578,701 - 75,640,268 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017603233   ⟹   XP_017458722
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera675,577,799 - 75,640,268 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017603234   ⟹   XP_017458723
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera675,577,799 - 75,640,268 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017603235   ⟹   XP_017458724
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera675,577,010 - 75,640,268 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039111594   ⟹   XP_038967522
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2676,787,524 - 76,885,246 (+)NCBI
RefSeq Acc Id: XM_039111595   ⟹   XP_038967523
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2676,787,518 - 76,876,444 (+)NCBI
RefSeq Acc Id: XM_039111596   ⟹   XP_038967524
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2676,819,004 - 76,885,246 (+)NCBI
RefSeq Acc Id: XM_039111598   ⟹   XP_038967526
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2676,818,163 - 76,885,246 (+)NCBI
RefSeq Acc Id: XM_039111599   ⟹   XP_038967527
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2676,819,004 - 76,885,246 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_003750212   ⟸   XM_003750164
- Peptide Label: isoform X14
- UniProtKB: D3ZHI1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003750211   ⟸   XM_003750163
- Peptide Label: isoform X16
- Sequence:
RefSeq Acc Id: XP_003750213   ⟸   XM_003750165
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_003754224   ⟸   XM_003754176
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_003754223   ⟸   XM_003754175
- Peptide Label: isoform X16
- Sequence:
RefSeq Acc Id: XP_003754225   ⟸   XM_003754177
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_006225837   ⟸   XM_006225775
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_006225841   ⟸   XM_006225779
- Peptide Label: isoform X14
- Sequence:
RefSeq Acc Id: XP_006240190   ⟸   XM_006240128
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_006240194   ⟸   XM_006240132
- Peptide Label: isoform X16
- Sequence:
RefSeq Acc Id: XP_008774470   ⟸   XM_008776248
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_008774469   ⟸   XM_008776247
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_008762902   ⟸   XM_008764680
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_008762901   ⟸   XM_008764679
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017458718   ⟸   XM_017603229
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017458719   ⟸   XM_017603230
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017458716   ⟸   XM_017603227
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017458720   ⟸   XM_017603231
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_017458717   ⟸   XM_017603228
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017458724   ⟸   XM_017603235
- Peptide Label: isoform X15
- Sequence:
RefSeq Acc Id: XP_017458722   ⟸   XM_017603233
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_017458723   ⟸   XM_017603234
- Peptide Label: isoform X13
- Sequence:
RefSeq Acc Id: XP_017458721   ⟸   XM_017603232
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_017449940   ⟸   XM_017594451
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017449941   ⟸   XM_017594452
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017449938   ⟸   XM_017594449
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017449942   ⟸   XM_017594453
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017449939   ⟸   XM_017594450
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017449946   ⟸   XM_017594457
- Peptide Label: isoform X18
- Sequence:
RefSeq Acc Id: XP_017449944   ⟸   XM_017594455
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_017449945   ⟸   XM_017594456
- Peptide Label: isoform X15
- Sequence:
RefSeq Acc Id: XP_017449943   ⟸   XM_017594454
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: ENSRNOP00000070325   ⟸   ENSRNOT00000089010
RefSeq Acc Id: ENSRNOP00000006995   ⟸   ENSRNOT00000006995
RefSeq Acc Id: ENSRNOP00000075271   ⟸   ENSRNOT00000077435
RefSeq Acc Id: ENSRNOP00000072272   ⟸   ENSRNOT00000086221
RefSeq Acc Id: ENSRNOP00000056080   ⟸   ENSRNOT00000059318
RefSeq Acc Id: NP_001358270   ⟸   NM_001371341
- Peptide Label: isoform 1 precursor
RefSeq Acc Id: XP_038967523   ⟸   XM_039111595
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038967522   ⟸   XM_039111594
- Peptide Label: isoform X7
RefSeq Acc Id: NP_001358276   ⟸   NM_001371347
- Peptide Label: isoform 2
RefSeq Acc Id: XP_038967526   ⟸   XM_039111598
- Peptide Label: isoform X17
RefSeq Acc Id: XP_038967524   ⟸   XM_039111596
- Peptide Label: isoform X13
RefSeq Acc Id: XP_038967527   ⟸   XM_039111599
- Peptide Label: isoform X19

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694623
Promoter ID:EPDNEW_R5142
Type:initiation region
Name:Mia2_1
Description:melanoma inhibitory activity 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0680,220,483 - 80,220,543EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Damaging Variants


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
6 89763413 89763414 C T snv BDIX/NemOda (KyushuU), BDIX.Cg-Tal/NemOda (KyushuU)
6 89771846 89771847 C A snv IS/Kyo (KyushuU), IS-Tlk/Kyo (KyushuU)


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
6 80200895 80200896 C T snv ACI/N (MCW), F344/NCrl (RGD), ACI/EurMcwi (RGD), F344/NRrrc (MCW)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:6488546 AgrOrtholog
Ensembl Genes ENSRNOG00000005101 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000006995 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000056080 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000070325 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000072272 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000075271 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000006995 UniProtKB/TrEMBL
  ENSRNOT00000059318 UniProtKB/TrEMBL
  ENSRNOT00000077435 UniProtKB/TrEMBL
  ENSRNOT00000086221 UniProtKB/TrEMBL
  ENSRNOT00000089010 UniProtKB/TrEMBL
NCBI Gene LOC100912115 ENTREZGENE
PhenoGen Mia2 PhenoGen
UniProt A0A0G2JXM0_RAT UniProtKB/TrEMBL
  A0A0G2K2J9_RAT UniProtKB/TrEMBL
  A0A0G2KA58_RAT UniProtKB/TrEMBL
  D3ZHI1 ENTREZGENE, UniProtKB/TrEMBL
  D3ZVL1_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-25 Mia2  MIA SH3 domain ER export factor 2  Mia2  melanoma inhibitory activity 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-11-29 Mia2  melanoma inhibitory activity 2  Ctage5  CTAGE family member 5, ER export factor  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-11-29 Ctage5  CTAGE family member 5, ER export factor  Mia2  melanoma inhibitory activity 2  Data Merged 737654 PROVISIONAL
2016-06-29 Ctage5  CTAGE family member 5, ER export factor  Ctage5  CTAGE family, member 5  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-01-09 Ctage5  CTAGE family, member 5  LOC100912115  cutaneous T-cell lymphoma-associated antigen 5 homolog  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2014-08-04 Mia2  melanoma inhibitory activity 2  Ctage5  CTAGE family, member 5  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-07-05 LOC100912115  cutaneous T-cell lymphoma-associated antigen 5 homolog      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-03-06 Ctage5  CTAGE family, member 5  Mgea6_predicted  meningioma expressed antigen 6 (coiled-coil proline-rich) (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-12 Mgea6_predicted  meningioma expressed antigen 6 (coiled-coil proline-rich) (predicted)      Symbol and Name status set to approved 70820 APPROVED