LOC100912172 (thioredoxin-like protein 4A-like) - Rat Genome Database

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Gene: LOC100912172 (thioredoxin-like protein 4A-like) Rattus norvegicus
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Symbol: LOC100912172
Name: thioredoxin-like protein 4A-like
RGD ID: 6488232
Description:
Type: protein-coding (Ensembl: processed_pseudogene)
RefSeq Status: MODEL
Previously known as: thioredoxin-like protein 4A
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr855,328,826 - 5,329,360 (+)NCBIGRCr8
mRatBN7.25465,481 - 465,672 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5465,481 - 465,672 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.02156,343,221 - 156,343,611 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02175,723,955 - 175,724,334 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Cytogenetic Map5q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

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Variants in LOC100912172
3 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)5190450412Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat


Expression


Sequence


RefSeq Acc Id: ENSRNOT00000115331
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5465,481 - 465,672 (+)Ensembl
RefSeq Acc Id: XM_039110902   ⟹   XP_038966830
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr855,328,826 - 5,329,360 (+)NCBI
mRatBN7.25465,481 - 465,672 (+)NCBI
Protein Sequences
Protein RefSeqs XP_038966830 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_038966830   ⟸   XM_039110902

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-42336 BioCyc
Ensembl Genes ENSRNOG00000064042 Ensembl, ENTREZGENE
NCBI Gene LOC100912172 ENTREZGENE
PhenoGen LOC100912172 PhenoGen
RatGTEx ENSRNOG00000064042 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-07-05 LOC100912172  thioredoxin-like protein 4A-like      Symbol and Name status set to provisional 70820 PROVISIONAL