LOC100912272 (keratin-associated protein 26-1-like) - Rat Genome Database

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Gene: LOC100912272 (keratin-associated protein 26-1-like) Rattus norvegicus
Analyze
No known orthologs.
Symbol: LOC100912272
Name: keratin-associated protein 26-1-like
RGD ID: 6488151
Description: Predicted to enable structural molecule activity. Predicted to be located in cytosol and keratin filament.
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81141,433,732 - 41,434,777 (-)NCBIGRCr8
mRatBN7.21127,947,429 - 27,949,456 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1127,947,508 - 27,948,065 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01128,597,622 - 28,598,220 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1128,597,622 - 28,598,179 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01132,217,141 - 32,217,698 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1127,663,005 - 27,663,603 (-)NCBICelera
Cytogenetic Map11q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Variants

.
Variants in LOC100912272
18 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:51
Count of miRNA genes:44
Interacting mature miRNAs:51
Transcripts:ENSRNOT00000070889
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598842Glom10Glomerulus QTL 103.4kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)11135331169Rat
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
1641927Alcrsp10Alcohol response QTL 10alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)11843667453436674Rat
724517Uae18Urinary albumin excretion QTL 183.7urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)111647204744285911Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)112295940367959403Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)112328045668280456Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)112328045668280456Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112767241082846715Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system exocrine system hemolymphoid system hepatobiliary system reproductive system respiratory system
High
Medium
Low
Below cutoff 2 1 1 1 1 6 3

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000070889   ⟹   ENSRNOP00000064428
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1127,947,508 - 27,948,065 (-)Ensembl
Rnor_6.0 Ensembl1128,597,622 - 28,598,179 (-)Ensembl
RefSeq Acc Id: XM_039088729   ⟹   XP_038944657
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81141,433,732 - 41,434,777 (-)NCBI
mRatBN7.21127,947,429 - 27,949,456 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038944657 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000064428
  ENSRNOP00000064428.1
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000064428   ⟸   ENSRNOT00000070889
RefSeq Acc Id: XP_038944657   ⟸   XM_039088729
- UniProtKB: M0R4X7 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0R4X7-F1-model_v2 AlphaFold M0R4X7 1-185 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698027
Promoter ID:EPDNEW_R8550
Type:single initiation site
Name:LOC100912272_1
Description:keratin-associated protein 26-1-like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01128,598,244 - 28,598,304EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:6488151 AgrOrtholog
BioCyc Gene G2FUF-22026 BioCyc
Ensembl Genes ENSRNOG00000050096 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000070889.2 UniProtKB/TrEMBL
InterPro Keratin_matx UniProtKB/TrEMBL
  PMG UniProtKB/TrEMBL
NCBI Gene LOC100912272 ENTREZGENE
PANTHER KERATIN ASSOCIATED PROTEIN 3-3-RELATED UniProtKB/TrEMBL
  KERATIN-ASSOCIATED PROTEIN 26-1 UniProtKB/TrEMBL
Pfam PMG UniProtKB/TrEMBL
PhenoGen LOC100912272 PhenoGen
RatGTEx ENSRNOG00000050096 RatGTEx
UniProt M0R4X7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-07-05 LOC100912272  keratin-associated protein 26-1-like      Symbol and Name status set to provisional 70820 PROVISIONAL