LOC100913071 (homeobox protein Hox-A10-like) - Rat Genome Database

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Gene: LOC100913071 (homeobox protein Hox-A10-like) Rattus norvegicus
Analyze
Symbol: LOC100913071
Name: homeobox protein Hox-A10-like
RGD ID: 6484922
Description:
Type: protein-coding
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Genome Annotation Status: not in current annotation release
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Celera476,222,210 - 76,227,618 (-)NCBICelera
Cytogenetic Map4 NCBI


References

Genomics

Position Markers
D7S2774  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0482,201,047 - 82,201,387NCBIRnor6.0
Rnor_6.0482,286,842 - 82,287,182NCBIRnor6.0
Rnor_5.04146,953,673 - 146,954,013UniSTSRnor5.0
Rnor_5.04146,867,878 - 146,868,218UniSTSRnor5.0
RGSC_v3.4480,532,370 - 80,532,710UniSTSRGSC3.4
Celera476,223,112 - 76,223,452UniSTS
Cytogenetic Map4q24UniSTS
RH135238  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0482,208,952 - 82,209,158NCBIRnor6.0
Rnor_6.0482,294,476 - 82,294,682NCBIRnor6.0
Rnor_5.04146,961,307 - 146,961,513UniSTSRnor5.0
Rnor_5.04146,875,783 - 146,875,989UniSTSRnor5.0
RGSC_v3.4480,540,004 - 80,540,210UniSTSRGSC3.4
Celera476,230,707 - 76,230,913UniSTS
AA893141  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0482,201,259 - 82,201,465NCBIRnor6.0
Rnor_6.0482,287,054 - 82,287,260NCBIRnor6.0
Rnor_5.04146,953,885 - 146,954,091UniSTSRnor5.0
Rnor_5.04146,868,090 - 146,868,296UniSTSRnor5.0
RGSC_v3.4480,532,582 - 80,532,788UniSTSRGSC3.4
Celera476,223,324 - 76,223,530UniSTS
RH 3.4 Map4513.31UniSTS
Cytogenetic Map4q24UniSTS
PMC140663P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.04146,870,518 - 146,870,931NCBIRnor5.0
RGSC_v3.4480,534,674 - 80,535,152UniSTSRGSC3.4
Celera476,225,416 - 76,225,862UniSTS
UniSTS:474751  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0482,211,702 - 82,212,012NCBIRnor6.0
Rnor_6.0482,297,226 - 82,297,536NCBIRnor6.0
Rnor_5.04146,964,057 - 146,964,367UniSTSRnor5.0
Rnor_5.04146,878,533 - 146,878,843UniSTSRnor5.0
RGSC_v3.4480,542,754 - 80,543,064UniSTSRGSC3.4
Celera476,233,457 - 76,233,767UniSTS
Cytogenetic Map4q24UniSTS
ECD00308  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0482,200,584 - 82,201,491NCBIRnor6.0
Rnor_6.0482,286,379 - 82,287,286NCBIRnor6.0
Rnor_5.04146,953,210 - 146,954,117UniSTSRnor5.0
Rnor_5.04146,867,415 - 146,868,322UniSTSRnor5.0
RGSC_v3.4480,531,907 - 80,532,814UniSTSRGSC3.4
Celera476,222,649 - 76,223,556UniSTS
ECD00416  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0482,201,552 - 82,202,453NCBIRnor6.0
Rnor_6.0482,287,347 - 82,288,248NCBIRnor6.0
Rnor_5.04146,954,178 - 146,955,079UniSTSRnor5.0
Rnor_5.04146,868,383 - 146,869,284UniSTSRnor5.0
RGSC_v3.4480,532,875 - 80,533,776UniSTSRGSC3.4
Celera476,223,617 - 76,224,518UniSTS
ECD01033  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.04146,955,128 - 146,955,771NCBIRnor5.0
Rnor_5.04146,869,333 - 146,870,205NCBIRnor5.0
RGSC_v3.4480,533,826 - 80,534,697UniSTSRGSC3.4
Celera476,224,568 - 76,225,439UniSTS
REN100658  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0482,204,032 - 82,204,258NCBIRnor6.0
Rnor_6.0482,289,556 - 82,289,782NCBIRnor6.0
Rnor_5.04146,956,387 - 146,956,613UniSTSRnor5.0
Rnor_5.04146,870,863 - 146,871,089UniSTSRnor5.0
RGSC_v3.4480,535,084 - 80,535,310UniSTSRGSC3.4
Celera476,225,794 - 76,226,020UniSTS
REN100642  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0482,199,906 - 82,200,138NCBIRnor6.0
Rnor_6.0482,285,701 - 82,285,933NCBIRnor6.0
Rnor_5.04146,952,532 - 146,952,764UniSTSRnor5.0
Rnor_5.04146,866,737 - 146,866,969UniSTSRnor5.0
RGSC_v3.4480,531,229 - 80,531,461UniSTSRGSC3.4
Celera476,221,971 - 76,222,203UniSTS
REN100659  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0482,204,240 - 82,204,493NCBIRnor6.0
Rnor_6.0482,289,764 - 82,290,017NCBIRnor6.0
Rnor_5.04146,956,595 - 146,956,848UniSTSRnor5.0
Rnor_5.04146,871,071 - 146,871,324UniSTSRnor5.0
RGSC_v3.4480,535,292 - 80,535,545UniSTSRGSC3.4
Celera476,226,002 - 76,226,255UniSTS
Hoxa10  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0482,201,562 - 82,203,098NCBIRnor6.0
Rnor_6.0482,287,357 - 82,288,893NCBIRnor6.0
Rnor_5.04146,954,188 - 146,955,724UniSTSRnor5.0
Rnor_5.04146,868,393 - 146,869,929UniSTSRnor5.0
RGSC_v3.4480,532,885 - 80,534,421UniSTSRGSC3.4
Celera476,223,627 - 76,225,163UniSTS
Hoxa10  
Rat AssemblyChrPosition (strand)SourceJBrowse
Celera476,225,387 - 76,225,462UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003753898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224946 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_003753898   ⟹   XP_003753946
RefSeq Status:
Type: CODING
Position: No map positions available.
RefSeq Acc Id: XM_006224946   ⟹   XP_006225008
RefSeq Status:
Type: CODING
Position: No map positions available.

Additional Information

Database Acc Id Source(s)
NCBI Gene LOC100913071 ENTREZGENE
PhenoGen LOC100913071 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-07-05 LOC100913071  homeobox protein Hox-A10-like      Symbol and Name status set to provisional 70820 PROVISIONAL