PSAT1P4 (phosphoserine aminotransferase 1 pseudogene 4) - Rat Genome Database

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Gene: PSAT1P4 (phosphoserine aminotransferase 1 pseudogene 4) Homo sapiens
Analyze
Symbol: PSAT1P4
Name: phosphoserine aminotransferase 1 pseudogene 4
RGD ID: 6484034
HGNC Page HGNC:43990
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: PSAT1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383166,691,187 - 166,691,914 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3166,691,187 - 166,691,712 (+)EnsemblGRCh38hg38GRCh38
GRCh373166,408,975 - 166,409,702 (+)NCBIGRCh37GRCh37hg19GRCh37
Celera3164,808,658 - 164,809,184 (+)NCBICelera
Cytogenetic Map3q26.1ENTREZGENE
HuRef3163,778,832 - 163,779,358 (+)ENTREZGENEHuRef
CHM1_13166,371,992 - 166,372,518 (+)NCBICHM1_1
T2T-CHM13v2.03169,474,423 - 169,475,150 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:100
Count of miRNA genes:48
Interacting mature miRNAs:48
Transcripts:ENST00000454471, ENST00000466500
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 1 4 4 4 4 2 11 3 8 2
Below cutoff 81 51 152 68 30 59 275 54 558 57 154 84 9 30 141

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000466500
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3166,691,187 - 166,691,712 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC PSAT1P4 COSMIC
Ensembl Genes ENSG00000224962 Ensembl
GTEx ENSG00000224962 GTEx
HGNC ID HGNC:43990 ENTREZGENE
Human Proteome Map PSAT1P4 Human Proteome Map
NCBI Gene PSAT1P4 ENTREZGENE