DCAF13P1 (DDB1 and CUL4 associated factor 13 pseudogene 1) - Rat Genome Database

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Gene: DCAF13P1 (DDB1 and CUL4 associated factor 13 pseudogene 1) Homo sapiens
Analyze
Symbol: DCAF13P1
Name: DDB1 and CUL4 associated factor 13 pseudogene 1
RGD ID: 6482594
HGNC Page HGNC:43866
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: DCAF13  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387106,125,319 - 106,127,889 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7106,125,371 - 106,126,700 (+)EnsemblGRCh38hg38GRCh38
GRCh377105,765,765 - 105,768,335 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367105,548,344 - 105,554,382 (+)NCBINCBI36Build 36hg18NCBI36
Celera7100,571,321 - 100,573,883 (+)NCBICelera
Cytogenetic Map7q22.3ENTREZGENE
HuRef7100,125,221 - 100,127,782 (+)ENTREZGENEHuRef
CHM1_17105,699,400 - 105,701,961 (+)NCBICHM1_1
T2T-CHM13v2.07107,440,739 - 107,443,306 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27105,126,812 - 105,129,375 (+)ENTREZGENE
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:9847074  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:79
Count of miRNA genes:79
Interacting mature miRNAs:79
Transcripts:ENST00000495256
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RH65390  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh378104,453,765 - 104,455,072UniSTSGRCh37
GRCh377105,766,977 - 105,767,108UniSTSGRCh37
Build 367105,554,213 - 105,554,344RGDNCBI36
Celera8100,640,291 - 100,641,598UniSTS
Celera7100,572,521 - 100,572,652RGD
Cytogenetic Map7q22.3UniSTS
Cytogenetic Map8q22.3UniSTS
HuRef7100,126,421 - 100,126,552UniSTS
HuRef899,654,101 - 99,655,409UniSTS
CRA_TCAGchr7v27105,128,012 - 105,128,143UniSTS
GeneMap99-GB4 RH Map7526.54UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 8 65 21 5 79 3 82 9 14 19 140 28 2 21 63
Below cutoff 1287 1451 1030 350 617 245 2768 1222 1737 250 989 936 113 813 1777 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000495256
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7106,125,371 - 106,126,700 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC DCAF13P1 COSMIC
Ensembl Genes ENSG00000242562 Ensembl, ENTREZGENE
GTEx ENSG00000242562 GTEx
HGNC ID HGNC:43866 ENTREZGENE
Human Proteome Map DCAF13P1 Human Proteome Map
NCBI Gene DCAF13P1 ENTREZGENE