CHCHD2P7 (coiled-coil-helix-coiled-coil-helix domain containing 2 pseudogene 7) - Rat Genome Database

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Gene: CHCHD2P7 (coiled-coil-helix-coiled-coil-helix domain containing 2 pseudogene 7) Homo sapiens
Analyze
Symbol: CHCHD2P7
Name: coiled-coil-helix-coiled-coil-helix domain containing 2 pseudogene 7
RGD ID: 6480948
HGNC Page HGNC:39591
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: CHCHD2  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38487,785,658 - 87,786,434 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl487,785,920 - 87,786,371 (-)EnsemblGRCh38hg38GRCh38
GRCh37488,706,810 - 88,707,586 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map4q22.1NCBI
HuRef484,452,672 - 84,453,111 (-)NCBIHuRef
CHM1_1488,683,871 - 88,684,310 (-)NCBICHM1_1
T2T-CHM13v2.0491,112,089 - 91,112,865 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in CHCHD2P7
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:86
Count of miRNA genes:86
Interacting mature miRNAs:86
Transcripts:ENST00000508008
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 3 1 31 20 9 21 139 3 39 115 15 77 10
Below cutoff 213 138 216 81 55 75 408 120 797 131 167 231 8 79 300 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000508008
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl487,785,920 - 87,786,371 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC CHCHD2P7 COSMIC
Ensembl Genes ENSG00000249973 Ensembl
GTEx ENSG00000249973 GTEx
HGNC ID HGNC:39591 ENTREZGENE
Human Proteome Map CHCHD2P7 Human Proteome Map
NCBI Gene CHCHD2P7 ENTREZGENE