CHCHD2P1 (coiled-coil-helix-coiled-coil-helix domain containing 2 pseudogene 1) - Rat Genome Database

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Gene: CHCHD2P1 (coiled-coil-helix-coiled-coil-helix domain containing 2 pseudogene 1) Homo sapiens
Analyze
Symbol: CHCHD2P1
Name: coiled-coil-helix-coiled-coil-helix domain containing 2 pseudogene 1
RGD ID: 6480946
HGNC Page HGNC:39585
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: CHCHD2  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X123,785,009 - 123,785,451 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX123,785,009 - 123,785,451 (+)EnsemblGRCh38hg38GRCh38
GRCh37X122,918,859 - 122,919,301 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic MapXq25NCBI
HuRefX112,305,395 - 112,305,837 (+)NCBIHuRef
CHM1_1X122,830,010 - 122,830,452 (+)NCBICHM1_1
T2T-CHM13v2.0X122,095,448 - 122,095,890 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:149
Count of miRNA genes:145
Interacting mature miRNAs:149
Transcripts:ENST00000429986
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system adipose tissue appendage
High
Medium
Low 10 7 6 12 6 1 15 2
Below cutoff 121 20 31 12 84 13 37 12 30 11 44 26 7 19

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000429986
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX123,785,009 - 123,785,451 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC CHCHD2P1 COSMIC
Ensembl Genes ENSG00000226902 Ensembl, ENTREZGENE
GTEx ENSG00000226902 GTEx
HGNC ID HGNC:39585 ENTREZGENE
Human Proteome Map CHCHD2P1 Human Proteome Map
NCBI Gene CHCHD2P1 ENTREZGENE