HMGB3P4 (high mobility group box 3 pseudogene 4) - Rat Genome Database

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Gene: HMGB3P4 (high mobility group box 3 pseudogene 4) Homo sapiens
Analyze
Symbol: HMGB3P4
Name: high mobility group box 3 pseudogene 4
RGD ID: 6480888
HGNC Page HGNC:39104
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: HMGB3  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381399,372,173 - 99,372,686 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1399,372,173 - 99,372,686 (+)EnsemblGRCh38hg38GRCh38
GRCh3713100,024,427 - 100,024,940 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map13q32.3NCBI
HuRef1380,618,707 - 80,619,220 (+)NCBIHuRef
CHM1_11399,994,615 - 99,995,128 (+)NCBICHM1_1
T2T-CHM13v2.01398,582,438 - 98,582,951 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:12727900  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:53
Count of miRNA genes:53
Interacting mature miRNAs:53
Transcripts:ENST00000428776
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 4 1 30 1
Low 615 543 450 176 690 87 2094 342 604 110 700 807 99 356 1213 3
Below cutoff 1431 1707 923 298 695 235 1815 1457 1770 174 599 631 64 707 1261 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000428776
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1399,372,173 - 99,372,686 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC HMGB3P4 COSMIC
Ensembl Genes ENSG00000228808 Ensembl, ENTREZGENE
GTEx ENSG00000228808 GTEx
HGNC ID HGNC:39104 ENTREZGENE
Human Proteome Map HMGB3P4 Human Proteome Map
NCBI Gene HMGB3P4 ENTREZGENE