HMGB1P47 (high mobility group box 1 pseudogene 47) - Rat Genome Database

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Gene: HMGB1P47 (high mobility group box 1 pseudogene 47) Homo sapiens
Analyze
Symbol: HMGB1P47
Name: high mobility group box 1 pseudogene 47
RGD ID: 6480883
HGNC Page HGNC:39280
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: HMGB1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38551,409,417 - 51,410,219 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl551,409,617 - 51,410,205 (-)EnsemblGRCh38hg38GRCh38
GRCh37550,705,251 - 50,706,053 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map5q11.2NCBI
HuRef547,669,073 - 47,669,661 (-)NCBIHuRef
CHM1_1550,708,455 - 50,709,043 (-)NCBICHM1_1
T2T-CHM13v2.0552,228,610 - 52,229,412 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:12727900  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:103
Count of miRNA genes:103
Interacting mature miRNAs:103
Transcripts:ENST00000511281
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 6 6 1 4 7 2 9 3 1
Below cutoff 138 11 25 10 27 3 18 57 100 19 154 29 7 28 10

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000511281
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl551,409,617 - 51,410,205 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC HMGB1P47 COSMIC
Ensembl Genes ENSG00000249338 Ensembl
GTEx ENSG00000249338 GTEx
HGNC ID HGNC:39280 ENTREZGENE
Human Proteome Map HMGB1P47 Human Proteome Map
NCBI Gene HMGB1P47 ENTREZGENE