Imported Disease Annotations - MGIObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Pank4 | Rat | cataract | | ISS | Pank4 (Mus musculus) | 13592920 | OMIM:601371 | MouseDO | | |
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Imported Disease Annotations - MGIObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Pank4 | Rat | cataract | | ISS | Pank4 (Mus musculus) | 13592920 | OMIM:601371 | MouseDO | | |
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# | Reference Title | Reference Citation |
1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | Electronic Transfer of LocusLink and RefSeq Data | NCBI rat LocusLink and RefSeq merged data July 26, 2002 |
3. | KEGG Annotation Import Pipeline | Pipeline to import KEGG annotations from KEGG into RGD |
4. | GOA pipeline | RGD automated data pipeline |
5. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
6. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
Pank4 (Rattus norvegicus - Norway rat) |
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PANK4 (Homo sapiens - human) |
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Pank4 (Mus musculus - house mouse) |
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Pank4 (Chinchilla lanigera - long-tailed chinchilla) |
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PANK4 (Pan paniscus - bonobo/pygmy chimpanzee) |
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PANK4 (Canis lupus familiaris - dog) |
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Pank4 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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PANK4 (Sus scrofa - pig) |
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PANK4 (Chlorocebus sabaeus - green monkey) |
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Pank4 (Heterocephalus glaber - naked mole-rat) |
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Variants in Pank4
27 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
RH128493 |
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alimentary part of gastrointestinal system
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appendage
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circulatory system
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ectoderm
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endocrine system
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endoderm
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exocrine system
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hemolymphoid system
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hepatobiliary system
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integumental system
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mesenchyme
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mesoderm
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nervous system
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renal system
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reproductive system
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respiratory system
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9 | 11 | 49 | 113 | 91 | 90 | 59 | 25 | 59 | 6 | 218 | 97 | 93 | 45 | 60 | 31 |
RefSeq Transcripts | NM_133531 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_063287113 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063287114 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063287115 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XR_005504359 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AC134160 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
AF399873 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH473968 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ223969 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ224186 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
JAXUCZ010000005 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
Ensembl Acc Id: | ENSRNOT00000019028 ⟹ ENSRNOP00000019028 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Ensembl Acc Id: | ENSRNOT00000094361 ⟹ ENSRNOP00000080157 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_133531 ⟹ NP_598215 | ||||||||||||||||||||||||||||
RefSeq Status: | PROVISIONAL | ||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_063287113 ⟹ XP_063143183 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063287114 ⟹ XP_063143184 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063287115 ⟹ XP_063143185 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XR_005504359 | ||||||||||||
Type: | NON-CODING | ||||||||||||
Position: |
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Protein RefSeqs | NP_598215 | (Get FASTA) | NCBI Sequence Viewer |
XP_063143183 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063143184 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063143185 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAK94009 | (Get FASTA) | NCBI Sequence Viewer |
EDL81281 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSRNOP00000019028.2 | ||
ENSRNOP00000080157.1 | |||
GenBank Protein | Q923S8 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_598215 ⟸ NM_133531 |
- UniProtKB: | Q923S8 (UniProtKB/Swiss-Prot), A6IUN0 (UniProtKB/TrEMBL), G3V7T3 (UniProtKB/TrEMBL) |
- Sequence: |
Ensembl Acc Id: | ENSRNOP00000019028 ⟸ ENSRNOT00000019028 |
Ensembl Acc Id: | ENSRNOP00000080157 ⟸ ENSRNOT00000094361 |
RefSeq Acc Id: | XP_063143183 ⟸ XM_063287113 |
- Peptide Label: | isoform X1 |
RefSeq Acc Id: | XP_063143185 ⟸ XM_063287115 |
- Peptide Label: | isoform X2 |
RefSeq Acc Id: | XP_063143184 ⟸ XM_063287114 |
- Peptide Label: | isoform X2 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-Q923S8-F1-model_v2 | AlphaFold | Q923S8 | 1-773 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
RGD ID: | 13694314 | ||||||||
Promoter ID: | EPDNEW_R4839 | ||||||||
Type: | multiple initiation site | ||||||||
Name: | Pank4_1 | ||||||||
Description: | pantothenate kinase 4 | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | RGD:628857 | AgrOrtholog |
BioCyc Gene | G2FUF-38942 | BioCyc |
Ensembl Genes | ENSRNOG00000014044 | Ensembl, UniProtKB/TrEMBL |
Ensembl Transcript | ENSRNOT00000019028.5 | UniProtKB/TrEMBL |
ENSRNOT00000094361.1 | UniProtKB/TrEMBL | |
Gene3D-CATH | 1.20.1700.10 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
3.30.420.40 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
3.30.420.510 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Uncharacterised protein PF01937, DUF89, domain 2 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Uncharacterised protein PF01937, DUF89, domain 3 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
InterPro | AF1104-like_sf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
At2g17340_3_helix_bundle | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
ATPase_NBD | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
DUF89 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
PanK_long | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Type_II_PanK | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
KEGG Report | rno:171053 | UniProtKB/Swiss-Prot |
NCBI Gene | 171053 | ENTREZGENE |
PANTHER | 4'-PHOSPHOPANTETHEINE PHOSPHATASE | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PTHR12280 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Pfam | DUF89 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Fumble | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
PhenoGen | Pank4 | PhenoGen |
PIRSF | PanK_long | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
RatGTEx | ENSRNOG00000014044 | RatGTEx |
Superfamily-SCOP | SSF111321 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
SSF53067 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
UniProt | A0A8I5ZQ29_RAT | UniProtKB/TrEMBL |
A6IUN0 | ENTREZGENE, UniProtKB/TrEMBL | |
G3V7T3 | ENTREZGENE, UniProtKB/TrEMBL | |
PANK4_RAT | UniProtKB/Swiss-Prot, ENTREZGENE |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2022-04-29 | Pank4 | pantothenate kinase 4 | Pank4 | pantothenate kinase 4 (inactive) | Name changed | 629549 | APPROVED |
2021-10-22 | Pank4 | pantothenate kinase 4 (inactive) | Pank4 | pantothenate kinase 4 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2003-04-09 | Pank4 | pantothenate kinase 4 | Symbol and Name updated | 629477 | APPROVED | ||
2003-03-06 | Pank4 | pantothenate kinase 4 | Fang1 | hypothetical protein Fang1 | Data merged from RGD:620090 | 628472 | PROVISIONAL |
2003-02-27 | Pank4 | pantothenate kinase 4 | Symbol and Name status set to provisional | 70820 | PROVISIONAL | ||
2002-08-07 | Fang1 | hypothetical protein Fang1 | Symbol and Name status set to provisional | 70820 | PROVISIONAL |