Art3 (ADP-ribosyltransferase 3) - Rat Genome Database
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Gene: Art3 (ADP-ribosyltransferase 3) Rattus norvegicus
Analyze
Symbol: Art3
Name: ADP-ribosyltransferase 3
RGD ID: 628833
Description: Predicted to have NAD+ ADP-ribosyltransferase activity. Predicted to be involved in peptidyl-arginine ADP-ribosylation. Predicted to localize to integral component of membrane. Orthologous to human ART3 (ADP-ribosyltransferase 3 (inactive)); INTERACTS WITH 17alpha-ethynylestradiol; 2,2',5,5'-tetrachlorobiphenyl; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: ecto-ADP-ribosyltransferase 3; LOC305235
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01417,143,037 - 17,225,389 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1417,143,040 - 17,225,389 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01417,059,129 - 17,141,549 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41417,198,267 - 17,280,642 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11417,220,238 - 17,220,888 (-)NCBI
Celera1415,031,682 - 15,113,870 (-)NCBICelera
Cytogenetic Map14p22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3,7-dihydropurine-6-thione  (EXP)
3-methylcholanthrene  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acrylamide  (EXP,ISO)
ammonium chloride  (EXP)
amphetamine  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (EXP)
benzalkonium chloride  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
cadmium dichloride  (EXP)
carbon nanotube  (ISO)
clofibrate  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dibenz[a,h]anthracene  (ISO)
dioxygen  (ISO)
diuron  (EXP)
doxorubicin  (ISO)
genistein  (ISO)
ketamine  (EXP)
lead diacetate  (ISO)
mercaptopurine  (EXP)
morphine  (EXP)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
O-methyleugenol  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
phorbol 13-acetate 12-myristate  (ISO)
poly(I:C)  (EXP)
progesterone  (EXP,ISO)
purine-6-thiol  (EXP)
sodium arsenite  (ISO)
sodium dodecyl sulfate  (ISO)
sodium fluoride  (ISO)
Soman  (EXP)
sulforaphane  (ISO)
tamoxifen  (ISO)
tetrachloromethane  (ISO)
titanium dioxide  (ISO)
tributylstannane  (EXP)
triclosan  (ISO)
trimellitic anhydride  (ISO)
troglitazone  (ISO)
valproic acid  (ISO)
zinc atom  (EXP)
zinc sulfate  (EXP)
zinc(0)  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

Additional References at PubMed
PMID:12477932   PMID:22037978   PMID:23533145   PMID:31505169  


Genomics

Comparative Map Data
Art3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01417,143,037 - 17,225,389 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1417,143,040 - 17,225,389 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01417,059,129 - 17,141,549 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41417,198,267 - 17,280,642 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11417,220,238 - 17,220,888 (-)NCBI
Celera1415,031,682 - 15,113,870 (-)NCBICelera
Cytogenetic Map14p22NCBI
ART3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl476,011,184 - 76,112,802 (+)EnsemblGRCh38hg38GRCh38
GRCh38476,011,168 - 76,112,791 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37476,932,333 - 77,033,955 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36477,214,887 - 77,252,965 (+)NCBINCBI36hg18NCBI36
Build 34477,353,041 - 77,391,117NCBI
Celera474,232,860 - 74,334,155 (+)NCBI
Cytogenetic Map4q21.1ENTREZGENE
HuRef472,684,626 - 72,786,387 (+)NCBIHuRef
CHM1_1476,908,897 - 77,010,440 (+)NCBICHM1_1
Art3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39592,479,659 - 92,562,487 (+)NCBIGRCm39mm39
GRCm38592,331,799 - 92,414,628 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl592,331,827 - 92,414,628 (+)EnsemblGRCm38mm10GRCm38
MGSCv37592,760,867 - 92,843,654 (+)NCBIGRCm37mm9NCBIm37
MGSCv36593,463,343 - 93,489,822 (+)NCBImm8
Celera590,475,638 - 90,563,091 (+)NCBICelera
Cytogenetic Map5E2NCBI
cM Map546.54NCBI
Art3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955433810,703 - 853,589 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955433743,631 - 850,612 (+)NCBIChiLan1.0ChiLan1.0
ART3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1453,931,454 - 54,032,652 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl453,931,454 - 53,969,512 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0448,093,339 - 48,194,785 (-)NCBIMhudiblu_PPA_v0panPan3
ART3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl32537,603 - 742,292 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.132563,628 - 742,482 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Art3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493667681,536 - 131,491 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ART3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl871,673,799 - 71,795,344 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1871,673,799 - 71,795,332 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2875,955,003 - 75,991,009 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ART3
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1724,505,862 - 24,614,799 (+)NCBI
ChlSab1.1 Ensembl724,577,172 - 24,616,629 (+)Ensembl
Art3
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475714,844,582 - 14,996,412 (-)NCBI

Position Markers
D14Got142  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01417,208,419 - 17,208,633NCBIRnor6.0
Rnor_5.01417,124,551 - 17,124,765UniSTSRnor5.0
RGSC_v3.41417,263,672 - 17,263,886UniSTSRGSC3.4
Celera1415,096,903 - 15,097,117UniSTS
Cytogenetic Map14p22UniSTS
RH129019  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01417,143,064 - 17,143,251NCBIRnor6.0
Rnor_5.01417,059,156 - 17,059,343UniSTSRnor5.0
RGSC_v3.41417,198,294 - 17,198,481UniSTSRGSC3.4
Celera1415,031,709 - 15,031,896UniSTS
Cytogenetic Map14p22UniSTS
RH 3.4 Map14163.2UniSTS
RH144308  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01417,151,853 - 17,152,052NCBIRnor6.0
Rnor_5.01417,067,945 - 17,068,144UniSTSRnor5.0
RGSC_v3.41417,207,083 - 17,207,282UniSTSRGSC3.4
Celera1415,040,500 - 15,040,699UniSTS
Cytogenetic Map14p22UniSTS
RH 3.4 Map14179.6UniSTS
RH128858  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01417,197,952 - 17,198,171NCBIRnor6.0
Rnor_5.01417,114,084 - 17,114,303UniSTSRnor5.0
RGSC_v3.41417,253,205 - 17,253,424UniSTSRGSC3.4
Celera1415,086,436 - 15,086,655UniSTS
Cytogenetic Map14p22UniSTS
RH 3.4 Map14164.4UniSTS
RH130528  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01417,212,616 - 17,212,833NCBIRnor6.0
Rnor_5.01417,128,748 - 17,128,965UniSTSRnor5.0
RGSC_v3.41417,267,869 - 17,268,086UniSTSRGSC3.4
Celera1415,101,100 - 15,101,317UniSTS
Cytogenetic Map14p22UniSTS
RH 3.4 Map14178.3UniSTS
RH142310  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01417,212,387 - 17,212,567NCBIRnor6.0
Rnor_5.01417,128,519 - 17,128,699UniSTSRnor5.0
RGSC_v3.41417,267,640 - 17,267,820UniSTSRGSC3.4
Celera1415,100,871 - 15,101,051UniSTS
Cytogenetic Map14p22UniSTS
RH 3.4 Map14182.09UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2300159Bmd61Bone mineral density QTL 615.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14127597761Rat
2300183Bmd60Bone mineral density QTL 605.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14127597761Rat
619619Rf4Renal disease susceptibility QTL 44.10.002total urine protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)14134403399Rat
9589814Gluco67Glucose level QTL 674.540.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)14141333960Rat
7411573Bw139Body weight QTL 1394.70.001body mass (VT:0001259)body weight gain (CMO:0000420)14141333960Rat
634352Apr6Acute phase response QTL 63.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)14142766285Rat
70204Niddm20Non-insulin dependent diabetes mellitus QTL 205.10.000008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)14222782519230541Rat
2293089Iddm31Insulin dependent diabetes mellitus QTL 314.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)14483323319909932Rat
2293089Iddm31Insulin dependent diabetes mellitus QTL 314.7blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)14483323319909932Rat
1300114Srn2Serum renin concentration QTL 23.27blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)14483323323004027Rat
70195Mcs8Mammary carcinoma susceptibility QTL 84.28mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)14483323326466248Rat
1331740Bw26Body weight QTL 263.028body mass (VT:0001259)body weight (CMO:0000012)14483323333040042Rat
1581500Renag1Renal agenesis QTL 1kidney development trait (VT:0000527)percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)14975643572854397Rat
1358296Ael3Aortic elastin QTL 33.70.00051aorta elastin amount (VT:0003905)aortic elastin141053997755539977Rat
2302045Pia39Pristane induced arthritis QTL 394.90.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G2a level (CMO:0002116)141053997755539977Rat
731183Pia20Pristane induced arthritis QTL 203.55joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)141072926861873323Rat
2302277Gluco38Glucose level QTL 385.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141268042430155192Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1412680424106641756Rat
631212Bw5Body weight QTL55.43retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)141268061332593926Rat
1300140Srn3Serum renin concentration QTL 33.19blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)141633698833163485Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:149
Count of miRNA genes:107
Interacting mature miRNAs:117
Transcripts:ENSRNOT00000052035
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 5 14 8 11 11 7 8
Low 27 16 5 16 64 33 25 4
Below cutoff 23 23 23 8 2 5

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001012034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001841020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001841021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AABR07072378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AABR07072379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01078298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC103535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC113621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ291433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC079018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000052035   ⟹   ENSRNOP00000039770
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1417,143,040 - 17,225,389 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000085525   ⟹   ENSRNOP00000074723
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1417,143,040 - 17,171,580 (-)Ensembl
RefSeq Acc Id: NM_001012034   ⟹   NP_001012034
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01417,143,037 - 17,225,389 (-)NCBI
Rnor_5.01417,059,129 - 17,141,549 (-)NCBI
RGSC_v3.41417,198,267 - 17,280,642 (-)RGD
Celera1415,031,682 - 15,113,870 (-)RGD
Sequence:
RefSeq Acc Id: XM_006250727   ⟹   XP_006250789
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01417,143,037 - 17,171,131 (-)NCBI
Rnor_5.01417,059,129 - 17,141,549 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006250728   ⟹   XP_006250790
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01417,143,037 - 17,171,131 (-)NCBI
Rnor_5.01417,059,129 - 17,141,549 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008770027   ⟹   XP_008768249
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01417,143,037 - 17,187,653 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001841020
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01417,143,037 - 17,171,132 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001841021
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01417,146,232 - 17,171,132 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_001012034   ⟸   NM_001012034
- Peptide Label: precursor
- UniProtKB: Q6AYJ9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006250790   ⟸   XM_006250728
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006250789   ⟸   XM_006250727
- Peptide Label: isoform X1
- UniProtKB: Q6AYJ9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008768249   ⟸   XM_008770027
- Peptide Label: isoform X1
- UniProtKB: Q6AYJ9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000074723   ⟸   ENSRNOT00000085525
RefSeq Acc Id: ENSRNOP00000039770   ⟸   ENSRNOT00000052035

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699212
Promoter ID:EPDNEW_R9737
Type:initiation region
Name:Art3_1
Description:ADP-ribosyltransferase 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01417,225,381 - 17,225,441EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:628833 AgrOrtholog
Ensembl Genes ENSRNOG00000002256 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000039770 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000074723 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000052035 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000085525 ENTREZGENE, UniProtKB/TrEMBL
InterPro ART UniProtKB/TrEMBL
KEGG Report rno:305235 UniProtKB/TrEMBL
NCBI Gene 305235 ENTREZGENE
Pfam ART UniProtKB/TrEMBL
PhenoGen Art3 PhenoGen
PRINTS RIBTRNSFRASE UniProtKB/TrEMBL
UniProt A0A0G2K8S9_RAT UniProtKB/TrEMBL
  Q6AYJ9 ENTREZGENE, UniProtKB/TrEMBL
  Q91YC0_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-10-04 Art3  ADP-ribosyltransferase 3  Art3_predicted  ADP-ribosyltransferase 3 (predicted)  Data Merged 737654 APPROVED
2005-01-20 Art3  ADP-ribosyltransferase 3      Symbol and Name status set to approved 1299863 APPROVED
2005-01-12 Art3_predicted  ADP-ribosyltransferase 3 (predicted)      Symbol and Name status set to approved 70820 APPROVED
2003-02-27 Art3  ADP-ribosyltransferase 3      Symbol and Name status set to provisional 70820 PROVISIONAL