 Gene Ontology Annotations | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Cellular Component
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Analyze GeneStrainQTL List |
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Cellular Component
Molecular Function
Gene-Chemical Interaction Annotations
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Gene Ontology AnnotationsBiological Process
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Cellular Component
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Molecular Function
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References - curated| 1. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
| 2. | MGD data from the GO Consortium |
| 3. | Przkora R, etal., Burns. 2007 Aug;33(5):628-33. Epub 2007 Mar 19. |
| 4. | RGD automated data pipeline |
| 5. | RGD automated import pipeline for gene-chemical interactions |
| 6. | RGD, Sept. 2003 |
Genomics
Comparative Map Data| Zfp709 (Rattus norvegicus - Norway rat) |
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| ZNF443 (Homo sapiens - human) |
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| Zfp709 (Mus musculus - house mouse) |
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QTLs in Region (Rnor_6.0)| The following QTLs overlap with this region. |  | Full Report | | CSV | | TAB | | Printer | | Gviewer |
miRNA Target Status
Predicted Target Of
| The detailed report is available here: | | Full Report | | CSV | | TAB | | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
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Expression
RNA-SEQ ExpressionHigh: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM
| testis | heart | brain | ovary | uterus | skeletal muscle tissue | colon | gastrocnemius | forebrain | hindbrain | lung | spleen | liver | kidney | adrenal gland | thymus | |
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| High | ||||||||||||||||
| Medium | 14 | 4 | 22 | 15 | 4 | 24 | 25 | 10 | 10 | 4 | 22 | 2 | 8 | |||
| Low | 7 | 39 | 1 | 3 | 3 | 8 | 2 | 1 | 1 | 37 | 13 | 6 | ||||
| Below cutoff | 1 |
View RNA-SEQ Expression Data
Sequence
Nucleotide Sequences| RefSeq Transcripts | NM_153731 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| XM_006252840 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006252841 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006252842 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_008771069 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_008771070 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_008771072 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| GenBank Nucleotide | AAHX01086808 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| AC130232 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AF277903 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| CH474031 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| FQ225021 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| FQ234091 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
Reference Sequences
| RefSeq Acc Id: | NM_153731 ⟹ NP_714953 | ||||||||||||||||||||||||
| RefSeq Status: | PROVISIONAL | ||||||||||||||||||||||||
| Type: | CODING | ||||||||||||||||||||||||
| Position: |
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| Sequence: |
CTGACCCTCCGTGGCCGTGAGCCGCCGCGGGGCTCATGGAGGCCCTGGGAGCAGACATGGGCTChide sequence |
| RefSeq Acc Id: | XM_006252840 ⟹ XP_006252902 | ||||||||||||||
| RefSeq Status: | |||||||||||||||
| Type: | CODING | ||||||||||||||
| Position: |
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| Sequence: |
CCTGGGTGAGCGAGGCGGGCGGGCAGGGCTGCGGAGGAGCCCTCGGCCCTTCTGCTCCCAGAGThide sequence |
| RefSeq Acc Id: | XM_006252841 ⟹ XP_006252903 | ||||||||||||||
| RefSeq Status: | |||||||||||||||
| Type: | CODING | ||||||||||||||
| Position: |
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| Sequence: |
AAAGTTCCAGAACCGGATTCTGTCTCGGAAAAGCCTGGAGAATTCTGCTTTACGGTGTTTATCThide sequence |
| RefSeq Acc Id: | XM_006252842 ⟹ XP_006252904 | ||||||||||||||
| RefSeq Status: | |||||||||||||||
| Type: | CODING | ||||||||||||||
| Position: |
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| Sequence: |
GAAAAAAAGAACCCCCCCCCCAAAAAAAAGCAAGTTAAGCAAGCCAGGGAAGGCAATCCAGTAAhide sequence |
| RefSeq Acc Id: | XM_008771069 ⟹ XP_008769291 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
TTCCAGAACCGGATTCTGTCTCGGAAAAGCCTGGAGAATTCTGCTTTACGGTGTTTATCTGCCAhide sequence |
| RefSeq Acc Id: | XM_008771070 ⟹ XP_008769292 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
GAAAAAAAGAACCCCCCCCCCAAAAAAAAGCAAGTTAAGCAAGCCAGGGAAGGCAATCCAGTAAhide sequence |
| RefSeq Acc Id: | XM_008771072 ⟹ XP_008769294 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
GAGACCTTCAGGAACCTGGCTGCCATAGGAAAAACACAAGAAGACCAGAACATAGATGATGACChide sequence |
Protein Sequences| Protein RefSeqs | NP_714953 | (Get FASTA) | NCBI Sequence Viewer |
| XP_006252902 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006252903 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006252904 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_008769291 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_008769292 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_008769294 | (Get FASTA) | NCBI Sequence Viewer | |
| GenBank Protein | AAG53889 | (Get FASTA) | NCBI Sequence Viewer |
| EDL90822 | (Get FASTA) | NCBI Sequence Viewer |
Reference Sequences
| RefSeq Acc Id: | NP_714953 ⟸ NM_153731 |
| - UniProtKB: | Q99PJ6 (UniProtKB/TrEMBL) |
| - Sequence: |
MEALGADMGSVTFEDVAVNFTVEEWALLGPSQKKLHRDVMEETFRNLAAIGKTQEDQNIDDDHRhide sequence |
| RefSeq Acc Id: | XP_006252903 ⟸ XM_006252841 |
| - Peptide Label: | isoform X2 |
| - Sequence: |
MVTDNENESYHISEHNQNKSLQGSVTFEDVAVNFTVEEWALLGPSQKKLHRDVMEETFRNLAAIhide sequence |
| RefSeq Acc Id: | XP_006252902 ⟸ XM_006252840 |
| - Peptide Label: | isoform X1 |
| - Sequence: |
MEERKRRNVEIHTKFPNEISYLLRVLLFGFWSDIFYEGSVTFEDVAVNFTVEEWALLGPSQKKLhide sequence |
| RefSeq Acc Id: | XP_006252904 ⟸ XM_006252842 |
| - Peptide Label: | isoform X2 |
| - Sequence: |
MVTDNENESYHISEHNQNKSLQGSVTFEDVAVNFTVEEWALLGPSQKKLHRDVMEETFRNLAAIhide sequence |
| RefSeq Acc Id: | XP_008769291 ⟸ XM_008771069 |
| - Peptide Label: | isoform X3 |
| - Sequence: |
MEETFRNLAAIGKTQEDQNIDDDHRYSRRNQRNGVVERLLEHRKGCECKAIFRQIPDTTGNRKThide sequence |
| RefSeq Acc Id: | XP_008769292 ⟸ XM_008771070 |
| - Peptide Label: | isoform X3 |
| - Sequence: |
MEETFRNLAAIGKTQEDQNIDDDHRYSRRNQRNGVVERLLEHRKGCECKAIFRQIPDTTGNRKThide sequence |
| RefSeq Acc Id: | XP_008769294 ⟸ XM_008771072 |
| - Peptide Label: | isoform X4 |
| - Sequence: |
MLISHASLNVSVPLQTAHKPPAYELCGENLYTFGECEKAFIYPECLLKHEDSDSRQRSCEFNQChide sequence |
TranscriptomePromoters| RGD ID: | 13699991 | |||||||||
| Promoter ID: | EPDNEW_R10514 | |||||||||
| Type: | initiation region | |||||||||
| Name: | Zfp709_1 | |||||||||
| Description: | zinc finger protein 709 | |||||||||
| SO ACC ID: | SO:0000170 | |||||||||
| Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | |||||||||
| Experiment Methods: | Single-end sequencing. | |||||||||
| Position: |
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Strain Variation
Strain Sequence Variants (Rnor 6.0)
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Additional Information
External Database Links| Database | Acc Id | Source(s) |
| AGR Gene | RGD:628698 | AgrOrtholog |
| Ensembl Genes | ENSRNOG00000016186 | ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Protein | ENSRNOP00000021741 | UniProtKB/TrEMBL |
| ENSRNOP00000075334 | ENTREZGENE, UniProtKB/TrEMBL | |
| Ensembl Transcript | ENSRNOT00000021742 | UniProtKB/TrEMBL |
| ENSRNOT00000087597 | ENTREZGENE, UniProtKB/TrEMBL | |
| InterPro | KRAB_dom_sf | UniProtKB/TrEMBL |
| Krueppel-associated_box | UniProtKB/TrEMBL | |
| Znf_C2H2/integrase_DNA-bd | UniProtKB/TrEMBL | |
| Znf_C2H2_sf | UniProtKB/TrEMBL | |
| KEGG Report | rno:266773 | UniProtKB/TrEMBL |
| NCBI Gene | 266773 | ENTREZGENE |
| Pfam | KRAB | UniProtKB/TrEMBL |
| zf-C2H2 | UniProtKB/TrEMBL | |
| PhenoGen | Zfp709 | PhenoGen |
| PROSITE | KRAB | UniProtKB/TrEMBL |
| ZINC_FINGER_C2H2_1 | UniProtKB/TrEMBL | |
| ZINC_FINGER_C2H2_2 | UniProtKB/TrEMBL | |
| SMART | KRAB | UniProtKB/TrEMBL |
| ZnF_C2H2 | UniProtKB/TrEMBL | |
| Superfamily-SCOP | Krueppel-associated_box | UniProtKB/TrEMBL |
| SSF57667 | UniProtKB/TrEMBL | |
| UniGene | Rn.123575 | ENTREZGENE |
| UniProt | F7FNT9_RAT | UniProtKB/TrEMBL |
| Q99PJ6 | ENTREZGENE, UniProtKB/TrEMBL |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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| 2008-02-25 | Zfp709 | zinc finger protein 709 | Znf14 | zinc finger protein 14 (KOX 6) | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
| 2004-09-10 | Znf14 | zinc finger protein 14 (KOX 6) | Hit40 | zinc finger protein HIT-40 | Symbol and Name updated | 1299863 | APPROVED |
| 2003-02-27 | Hit40 | zinc finger protein HIT-40 | Symbol and Name status set to provisional | 70820 | PROVISIONAL |
RGD Curation Notes| Note Type | Note | Reference |
|---|---|---|
| gene_expression | expressed in brain | 634611 |
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| More on Zfp709 | |
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Alliance Gene |
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NCBI Gene |
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Ensembl Gene |
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JBrowse: rn5 rn6 |
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NCBI Genome Data Viewer |
| RGD Object Information | |
| RGD ID: | 628698 |
| Created: | 2003-02-27 |
| Species: | Rattus norvegicus |
| Last Modified: | 2019-10-16 |
| Status: | ACTIVE |
