Sec13 (SEC13 homolog, nuclear pore and COPII component) - Rat Genome Database

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Gene: Sec13 (SEC13 homolog, nuclear pore and COPII component) Rattus rattus
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Symbol: Sec13
Name: SEC13 homolog, nuclear pore and COPII component
RGD ID: 626101604
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN cellular response to nutrient levels (ortholog); COPII-coated vesicle cargo loading (ortholog); endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); PARTICIPATES IN mRNA nuclear export pathway; FOUND IN COPII vesicle coat (ortholog); GATOR2 complex (ortholog); kinetochore (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protein SEC13 homolog; SEC13 homolog, nuclear pore and COPII coat complex component
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Rrattus_CSIRO_v1 - Rrattus_CSIRO_v1 Assembly
Position:
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1632,793,323 - 32,806,474 (+)NCBIRrattus_CSIRO_v1



Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Sec13
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1632,793,323 - 32,806,474 (+)NCBIRrattus_CSIRO_v1
SEC13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38310,300,931 - 10,321,112 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl310,293,131 - 10,321,123 (-)Ensemblhg38GRCh38
GRCh37310,342,615 - 10,362,796 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36310,317,615 - 10,337,855 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34310,317,616 - 10,337,855NCBI
Celera310,278,423 - 10,298,663 (-)NCBICelera
Cytogenetic Map3p25.3NCBI
HuRef310,277,973 - 10,298,216 (-)NCBIHuRef
CHM1_1310,292,741 - 10,312,907 (-)NCBICHM1_1
T2T-CHM13v2.0310,294,231 - 10,314,421 (-)NCBIT2T-CHM13v2.0
Sec13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396113,705,013 - 113,717,642 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6113,705,023 - 113,717,704 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm386113,728,052 - 113,740,681 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6113,728,062 - 113,740,743 (-)Ensemblmm10GRCm38
MGSCv376113,678,046 - 113,690,675 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv366113,693,829 - 113,706,458 (-)NCBIMGSCv36mm8
Celera6115,553,563 - 115,566,192 (-)NCBICelera
Cytogenetic Map6E3NCBI
cM Map652.84NCBI
Sec13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84148,433,344 - 148,446,735 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4148,433,349 - 148,446,755 (-)EnsemblGRCr8
mRatBN7.24146,877,739 - 146,891,130 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4146,875,524 - 146,891,173 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4152,262,389 - 152,275,663 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04148,043,260 - 148,056,534 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04146,671,488 - 146,684,762 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04145,686,186 - 145,699,577 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4145,686,193 - 145,699,577 (-)Ensemblrn6Rnor6.0
Rnor_5.04208,982,585 - 208,995,976 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44149,637,058 - 149,650,449 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4135,432,416 - 135,445,807 (-)NCBICelera
RGSC_v3.14149,881,901 - 149,895,290 (-)NCBI
Cytogenetic Map4q42NCBI
Sec13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555611,707,053 - 1,723,862 (-)Ensembl
ChiLan1.0NW_0049555611,707,053 - 1,723,715 (-)NCBIChiLan1.0ChiLan1.0
SEC13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2210,296,920 - 10,317,714 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1310,301,680 - 10,322,438 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0310,237,101 - 10,257,694 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1310,588,644 - 10,608,754 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl310,588,644 - 10,608,754 (-)EnsemblpanPan2panpan1.1
SEC13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1208,041,485 - 8,075,078 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl208,041,544 - 8,075,076 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha208,075,852 - 8,109,440 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0208,071,236 - 8,104,785 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl208,071,294 - 8,107,266 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1207,793,128 - 7,826,671 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0208,138,831 - 8,172,389 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0208,112,442 - 8,146,040 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Sec13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494215,879,223 - 15,896,270 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366023,013,337 - 3,030,486 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366023,013,490 - 3,030,489 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SEC13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1366,480,169 - 66,524,384 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11366,483,620 - 66,524,411 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21373,547,020 - 73,570,002 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SEC13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12246,336,909 - 46,357,435 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2246,336,829 - 46,355,723 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666041120,179,801 - 120,200,334 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sec13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247315,194,961 - 5,217,821 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247315,194,852 - 5,217,821 (+)NCBIHetGla 1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_032905908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAAIVD010000024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_032905908   ⟹   XP_032761799
Type: CODING
Position:
Black Rat AssemblyChrPosition (strand)Source
Rrattus_CSIRO_v1632,793,323 - 32,806,474 (+)NCBI
Protein Sequences
Protein RefSeqs XP_032761799 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_032761799   ⟸   XM_032905908


Additional Information

Database Acc Id Source(s)
NCBI Gene Sec13 ENTREZGENE