Rpn2 (ribophorin II) - Rat Genome Database

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Gene: Rpn2 (ribophorin II) Mus musculus
Analyze
Symbol: Rpn2
Name: ribophorin II
RGD ID: 62367
MGI Page MGI
Description: Predicted to enable ribosome binding activity. Acts upstream of or within protein N-linked glycosylation. Predicted to be located in autophagosome membrane; endoplasmic reticulum; and nuclear body. Predicted to be part of oligosaccharyltransferase complex. Is expressed in several structures, including alimentary system; brain; ear; heart; and integumental system. Orthologous to human RPN2 (ribophorin II).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1300012C06Rik; AV261018; dolichyl-diphosphooligosaccharide--protein glycosyltransferase 63 kDa subunit; dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2; ribophorin-2; Rp; Rpn-2; RPN-II
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392157,121,018 - 157,168,238 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2157,120,937 - 157,168,239 (+)EnsemblGRCm39 Ensembl
GRCm382157,279,098 - 157,326,318 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2157,279,017 - 157,326,319 (+)EnsemblGRCm38mm10GRCm38
MGSCv372157,104,834 - 157,152,054 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362156,970,539 - 157,017,759 (+)NCBIMGSCv36mm8
Celera2163,214,429 - 163,262,680 (+)NCBICelera
Cytogenetic Map2H1NCBI
cM Map278.2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
1,2,4-trimethylbenzene  (ISO)
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
2,4-dinitrotoluene  (ISO)
2,6-dinitrotoluene  (ISO)
2-amino-14,16-dimethyloctadecan-3-ol  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (ISO)
6-propyl-2-thiouracil  (ISO)
aconitine  (ISO)
aflatoxin B1  (EXP,ISO)
amiodarone  (ISO)
ammonium chloride  (ISO)
ampicillin  (ISO)
antirheumatic drug  (ISO)
benzbromarone  (ISO)
benzo[a]pyrene  (EXP,ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (ISO)
bisphenol AF  (ISO)
bisphenol F  (ISO)
caffeine  (ISO)
chlorpyrifos  (EXP)
clobetasol  (EXP)
clofibrate  (EXP,ISO)
clofibric acid  (ISO)
clozapine  (ISO)
cyclosporin A  (EXP,ISO)
decabromodiphenyl ether  (ISO)
dibutyl phthalate  (ISO)
diethylstilbestrol  (ISO)
diuron  (ISO)
doxorubicin  (ISO)
fenthion  (EXP)
folic acid  (EXP)
genistein  (ISO)
gentamycin  (ISO)
glafenine  (ISO)
hydrogen peroxide  (ISO)
ivermectin  (ISO)
L-ethionine  (ISO)
lead(0)  (ISO)
methidathion  (EXP)
metronidazole  (ISO)
N-nitrosodiethylamine  (ISO)
neomycin  (ISO)
nitrates  (EXP)
Nonylphenol  (ISO)
omeprazole  (ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
sodium arsenite  (EXP)
sodium fluoride  (EXP)
T-2 toxin  (ISO)
testosterone  (ISO)
thapsigargin  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
tunicamycin  (ISO)
valproic acid  (ISO)
vancomycin  (ISO)
vinclozolin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. Rat ribophorin II: molecular cloning and chromosomal localization of a highly conserved transmembrane glycoprotein of the rough endoplasmic reticulum. Pirozzi G, etal., Biochem Biophys Res Commun 1991 May 15;176(3):1482-6.
7. Mouse MP Annotation Import Pipeline RGD automated import pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:2066112   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:14681479   PMID:15489334   PMID:15782199  
PMID:16141072   PMID:16141073   PMID:18554416   PMID:18724378   PMID:18799693   PMID:19549781   PMID:21267068   PMID:21677750   PMID:21873635   PMID:22083510   PMID:24457600   PMID:25332179  
PMID:26167872   PMID:27113764   PMID:27889896   PMID:28378742   PMID:29530978   PMID:30550785   PMID:30973865   PMID:31831667   PMID:32783947   PMID:35670107   PMID:38355793   PMID:38551359  


Genomics

Comparative Map Data
Rpn2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392157,121,018 - 157,168,238 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2157,120,937 - 157,168,239 (+)EnsemblGRCm39 Ensembl
GRCm382157,279,098 - 157,326,318 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2157,279,017 - 157,326,319 (+)EnsemblGRCm38mm10GRCm38
MGSCv372157,104,834 - 157,152,054 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362156,970,539 - 157,017,759 (+)NCBIMGSCv36mm8
Celera2163,214,429 - 163,262,680 (+)NCBICelera
Cytogenetic Map2H1NCBI
cM Map278.2NCBI
RPN2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382037,179,330 - 37,241,619 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2037,178,410 - 37,241,619 (+)EnsemblGRCh38hg38GRCh38
GRCh372035,807,733 - 35,870,022 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362035,240,888 - 35,303,440 (+)NCBINCBI36Build 36hg18NCBI36
Build 342035,240,887 - 35,303,437NCBI
Celera2032,515,047 - 32,577,306 (+)NCBICelera
Cytogenetic Map20q11.23NCBI
HuRef2032,542,723 - 32,605,618 (+)NCBIHuRef
CHM1_12035,710,383 - 35,772,982 (+)NCBICHM1_1
T2T-CHM13v2.02038,903,678 - 38,965,687 (+)NCBIT2T-CHM13v2.0
Rpn2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83166,361,955 - 166,409,272 (+)NCBIGRCr8
mRatBN7.23145,941,787 - 145,989,271 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3145,941,839 - 145,989,543 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3149,767,433 - 149,814,629 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03158,268,659 - 158,316,011 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03156,009,739 - 156,057,338 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03153,398,373 - 153,445,633 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3153,398,130 - 153,445,632 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03158,274,303 - 158,321,478 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43147,976,544 - 148,023,743 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13147,882,452 - 147,929,652 (+)NCBI
Celera3144,647,439 - 144,694,686 (+)NCBICelera
Cytogenetic Map3q42NCBI
Rpn2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542224,497,228 - 24,550,439 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542224,497,288 - 24,550,439 (-)NCBIChiLan1.0ChiLan1.0
RPN2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22142,906,739 - 42,968,993 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12042,900,027 - 42,962,091 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02033,501,275 - 33,563,523 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12034,616,651 - 34,678,131 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2034,616,651 - 34,678,127 (+)Ensemblpanpan1.1panPan2
RPN2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12425,827,524 - 25,884,813 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2425,827,450 - 25,955,742 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2425,475,694 - 25,533,721 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02426,524,313 - 26,582,092 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2426,524,373 - 26,584,009 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12425,801,956 - 25,859,617 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02425,906,817 - 25,964,620 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02426,396,000 - 26,453,865 (+)NCBIUU_Cfam_GSD_1.0
Rpn2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640174,728,719 - 174,788,494 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365613,960,818 - 4,021,369 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365613,960,979 - 4,020,792 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPN2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1740,322,368 - 40,378,858 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11740,322,364 - 40,378,866 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21745,858,843 - 45,874,957 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RPN2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1226,503,344 - 26,563,958 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl226,503,597 - 26,564,142 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605075,383,645 - 75,444,405 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpn2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248422,349,707 - 2,419,462 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248422,349,837 - 2,419,262 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rpn2
2730 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1702
Count of miRNA genes:667
Interacting mature miRNAs:816
Transcripts:ENSMUST00000029171, ENSMUST00000116380, ENSMUST00000123639, ENSMUST00000125311, ENSMUST00000126248, ENSMUST00000127252, ENSMUST00000141934, ENSMUST00000142463, ENSMUST00000149924, ENSMUST00000150349, ENSMUST00000156007
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301907Rends_mrenal disease susceptibility (mouse)Not determined2135699221169699361Mouse
1301783Bhr1_mbronchial hyperresponsiveness 1 (mouse)Not determined2142593476178442452Mouse
12790983Bwq12_mbody weight QTL 12 (mouse)2148238204181755017Mouse
1301019Bmd6_mbone mineral density 6 (mouse)Not determined2151778297181755017Mouse
12910799Pwgrq2_mpre-weaning growth rate QTL 2 (mouse)2118589253160611165Mouse
1558939Gnf1_mgrowth and fatness 1 (mouse)Not determined2143773445169117924Mouse
13825247Agoc2_magouti coat color QTL 2 (mouse)2151841920159841920Mouse
12910795Pwbwq5_mpost-weaning body weight QTL 5 (mouse)2118589253160611165Mouse
1300867Lore2_mloss of righting induced by ethanol 2 (mouse)Not determined2144515861180896594Mouse
1558917Gct8_mgranulosa cell tumorigenesis 8 (mouse)Not determined2149236907181755017Mouse
12910812Pwgrq1_mpre-weaning growth rate QTL 1 (mouse)2118589253160611165Mouse
12910814Pwbwq1_mpre-weaning body weight QTL 1 (mouse)2118589253160611165Mouse
14747002Mancz3_mmandible centroid size 3 (mouse)2152329820181755017Mouse
1300751Bdt1_mbone density traits 1 (mouse)Not determined2149988902181755017Mouse
1300622Cfld1_mcystic fibrosis lung disease 1 (mouse)Not determined2155823920181755017Mouse
10054066Bwq9_mbody weight QTL 9 (mouse)Not determined2135699221169699361Mouse
1301822Pgia2_mproteoglycan induced arthritis 2 (mouse)Not determined2123937311157937424Mouse
10043956Gnf5_mgrowth and fatness 5 (mouse)Not determined2135699221169699361Mouse
1558842Tailq2_mtail length QTL 2 (mouse)Not determined2151640941162737074Mouse
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265269746162518926Mouse
10412080Hylaq2_mHyperlocomotor activity related QTL 2 (mouse)Not determined2151640941164119146Mouse
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285724269180896594Mouse
1357862Epfq1_mepididymal fat pad weight QTL 1 (mouse)Not determined2151640941162737074Mouse
1301031Bdln3_mbody length 3 (mouse)Not determined2127664019161664118Mouse
11341717Rvfs1_mRift Valley fever susceptibility 1 (mouse)2135432544173449616Mouse
4141703Chlq13_mcirculating hormone level QTL 13 (mouse)Not determined2135699221169699361Mouse
1357484Bsbob_mBSB obesity (mouse)Not determined2143773445165665019Mouse
27226788Feml13_mfemur length 13, 10 week (mouse)2102630345159941920Mouse
4142211Nilac3_mnicotine induced locomotor activity 3 (mouse)Not determined2148664893181755017Mouse
1558867Gnf3_mgrowth and fatness 3 (mouse)Not determined2152699221169117924Mouse
11038701Ltpr2e_mLeishmania tropica response 2e (mouse)2150212221181755017Mouse
11038702Ltpr2_mLeishmania tropica response 2 (mouse)2103095716167212356Mouse
1301588Hrec_mhemotopoietic response to early cytokines (mouse)Not determined2154553217159428450Mouse
4142450Lmr16_mleishmaniasis resistance 16 (mouse)Not determined2150212221181755017Mouse
1301085Lrnx10_mlearning-contextual 10 (mouse)Not determined2150212221181755017Mouse
11353826Bdln10_mbody length 10 (mouse)2140441482174441482Mouse
1558852Gnf2_mgrowth and fatness 2 (mouse)Not determined2152699221162197085Mouse
1300806Aod4_mautoimmune ovarian dysgenesis 4 (mouse)Not determined2145228719179228841Mouse
4141033Wg2d_mweight gain in high growth mice 2d (mouse)Not determined143773445160303008Mouse
1357772Scfq1_msubcutaneous fat pad weight QTL 1 (mouse)Not determined2151640941162737074Mouse
1301961Bts1_mbladder tumor susceptibility 1 (mouse)Not determined2132024159166024330Mouse
1301618Bglu1_mblood glucose level 1 (mouse)Not determined2117942930174324863Mouse
27226749Femd10_mfemur midshaft diameter 10, 16 week (mouse)2124441920168241920Mouse
1302143Bwq5_mbody weight (mouse)Not determined2127664019161664118Mouse
1302013Tbbmd3_mtotal body bone mineral density 3 (mouse)Not determined2145196949179197085Mouse
12880427V25Dq3_mvitamin D inactive form serum level QTL 3 (mouse)2129341920163341920Mouse
13504830Bacsq1_mbaculum shape QTL 1 (mouse)2145716184161016184Mouse
12801456Intmrm1_mintima/media ratio modifier 1 (mouse)2142428347176428450Mouse
1357537Lith12_mlithogenic gene 12 (mouse)Not determined2156196464181755017Mouse
11049566Lmr28e_mleishmaniasis resistance 28e (mouse)2133144911167145058Mouse
12801461Intim1_mintima modifier 1 (mouse)2142428347176428450Mouse
11049567Lmr28f_mleishmaniasis resistance 28f (mouse)2133144911167145058Mouse
1301865Hdlq19_mHDL QTL 19 (mouse)Not determined2145518775179518926Mouse
12910520Scgq3_mspontaneous crescentic glomerulonephritis QTL 3 (mouse)2151709273174389124Mouse
1300846Pbwg11_mpostnatal body weight growth 11 (mouse)Not determined2138966600172966729Mouse

Markers in Region
RH125137  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382157,325,826 - 157,325,985UniSTSGRCm38
MGSCv372157,151,562 - 157,151,721UniSTSGRCm37
Celera2163,262,187 - 163,262,346UniSTS
Cytogenetic Map2H1UniSTS
cM Map291.0UniSTS
Rpn2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2H1UniSTS
cM Map291.0UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001355163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001355164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001355165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_019642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006499021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006499024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030248863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036159776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036159778 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK004968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK018761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK087923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166778 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205729 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK220078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL669828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC010509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC046806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D31717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000029171   ⟹   ENSMUSP00000029171
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2157,121,066 - 157,168,239 (+)Ensembl
GRCm38.p6 Ensembl2157,279,146 - 157,326,319 (+)Ensembl
Ensembl Acc Id: ENSMUST00000116380   ⟹   ENSMUSP00000112081
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2157,120,979 - 157,168,239 (+)Ensembl
GRCm38.p6 Ensembl2157,279,059 - 157,326,319 (+)Ensembl
Ensembl Acc Id: ENSMUST00000123639
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2157,156,471 - 157,158,128 (+)Ensembl
GRCm38.p6 Ensembl2157,314,551 - 157,316,208 (+)Ensembl
Ensembl Acc Id: ENSMUST00000125311
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2157,136,762 - 157,137,273 (+)Ensembl
GRCm38.p6 Ensembl2157,294,842 - 157,295,353 (+)Ensembl
Ensembl Acc Id: ENSMUST00000126248
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2157,125,503 - 157,167,655 (+)Ensembl
GRCm38.p6 Ensembl2157,283,583 - 157,325,735 (+)Ensembl
Ensembl Acc Id: ENSMUST00000127252
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2157,121,346 - 157,167,976 (+)Ensembl
GRCm38.p6 Ensembl2157,279,426 - 157,326,056 (+)Ensembl
Ensembl Acc Id: ENSMUST00000141934
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2157,158,097 - 157,164,391 (+)Ensembl
GRCm38.p6 Ensembl2157,316,177 - 157,322,471 (+)Ensembl
Ensembl Acc Id: ENSMUST00000142463
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2157,120,937 - 157,131,481 (+)Ensembl
GRCm38.p6 Ensembl2157,279,017 - 157,289,561 (+)Ensembl
Ensembl Acc Id: ENSMUST00000149924
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2157,161,703 - 157,164,080 (+)Ensembl
GRCm38.p6 Ensembl2157,319,783 - 157,322,160 (+)Ensembl
Ensembl Acc Id: ENSMUST00000150349
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2157,121,489 - 157,132,631 (+)Ensembl
GRCm38.p6 Ensembl2157,279,569 - 157,290,711 (+)Ensembl
Ensembl Acc Id: ENSMUST00000156007
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2157,123,863 - 157,132,512 (+)Ensembl
GRCm38.p6 Ensembl2157,281,943 - 157,290,592 (+)Ensembl
RefSeq Acc Id: NM_001355163   ⟹   NP_001342092
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392157,121,018 - 157,168,238 (+)NCBI
GRCm382157,279,098 - 157,326,318 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001355164   ⟹   NP_001342093
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392157,123,950 - 157,168,238 (+)NCBI
GRCm382157,282,030 - 157,326,318 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001355165   ⟹   NP_001342094
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392157,121,346 - 157,168,238 (+)NCBI
GRCm382157,279,426 - 157,326,318 (+)NCBI
Sequence:
RefSeq Acc Id: NM_019642   ⟹   NP_062616
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392157,121,018 - 157,168,238 (+)NCBI
GRCm382157,279,098 - 157,326,318 (+)NCBI
MGSCv372157,104,834 - 157,152,054 (+)RGD
Celera2163,214,429 - 163,262,680 (+)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006499021   ⟹   XP_006499084
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392157,121,509 - 157,167,977 (+)NCBI
GRCm382157,279,679 - 157,326,057 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006499024   ⟹   XP_006499087
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392157,121,302 - 157,167,977 (+)NCBI
GRCm382157,279,382 - 157,326,057 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030248863   ⟹   XP_030104723
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392157,121,235 - 157,167,980 (+)NCBI
GRCm382157,279,315 - 157,326,058 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036159776   ⟹   XP_036015669
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392157,121,516 - 157,167,979 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036159778   ⟹   XP_036015671
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392157,122,960 - 157,167,979 (+)NCBI
Sequence:
RefSeq Acc Id: NP_062616   ⟸   NM_019642
- Peptide Label: isoform 2 precursor
- UniProtKB: Q9DBG6 (UniProtKB/Swiss-Prot),   Q3TKY0 (UniProtKB/Swiss-Prot),   A2ACG6 (UniProtKB/Swiss-Prot),   Q91XH0 (UniProtKB/Swiss-Prot),   Q61833 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006499087   ⟸   XM_006499024
- Peptide Label: isoform X1
- UniProtKB: A2ACG7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006499084   ⟸   XM_006499021
- Peptide Label: isoform X3
- UniProtKB: Q61833 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001342092   ⟸   NM_001355163
- Peptide Label: isoform 1 precursor
- UniProtKB: A2ACG7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030104723   ⟸   XM_030248863
- Peptide Label: isoform X2
- UniProtKB: A2ACG7 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001342094   ⟸   NM_001355165
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001342093   ⟸   NM_001355164
- Peptide Label: isoform 3 precursor
- UniProtKB: A2ACG7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000029171   ⟸   ENSMUST00000029171
Ensembl Acc Id: ENSMUSP00000112081   ⟸   ENSMUST00000116380
RefSeq Acc Id: XP_036015669   ⟸   XM_036159776
- Peptide Label: isoform X4
- UniProtKB: Q3U505 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036015671   ⟸   XM_036159778
- Peptide Label: isoform X5
- UniProtKB: Q61833 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9DBG6-F1-model_v2 AlphaFold Q9DBG6 1-631 view protein structure

Promoters
RGD ID:6832611
Promoter ID:MM_KWN:32680
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4
Transcripts:OTTMUST00000038674,   OTTMUST00000038675,   OTTMUST00000038676,   OTTMUST00000038678,   OTTMUST00000038679
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362157,104,671 - 157,105,171 (+)MPROMDB
RGD ID:6832612
Promoter ID:MM_KWN:32686
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:OTTMUST00000038684
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362157,140,761 - 157,141,261 (+)MPROMDB
RGD ID:6879456
Promoter ID:EPDNEW_M3179
Type:initiation region
Name:Rpn2_2
Description:Mus musculus ribophorin II , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M3180  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382157,279,006 - 157,279,066EPDNEW
RGD ID:6879458
Promoter ID:EPDNEW_M3180
Type:initiation region
Name:Rpn2_1
Description:Mus musculus ribophorin II , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M3179  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382157,279,311 - 157,279,371EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:98085 AgrOrtholog
Ensembl Genes ENSMUSG00000027642 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000029171 ENTREZGENE
  ENSMUST00000029171.6 UniProtKB/TrEMBL
  ENSMUST00000116380 ENTREZGENE
  ENSMUST00000116380.9 UniProtKB/Swiss-Prot
  ENSMUST00000127252 ENTREZGENE
InterPro Swp1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:20014 UniProtKB/Swiss-Prot
MGD MGI:98085 ENTREZGENE
NCBI Gene 20014 ENTREZGENE
PANTHER DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12640 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ribophorin_II UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rpn2 PhenoGen
UniProt A2ACG6 ENTREZGENE
  A2ACG7 ENTREZGENE, UniProtKB/TrEMBL
  Q3TKY0 ENTREZGENE
  Q3U505 ENTREZGENE, UniProtKB/TrEMBL
  Q61833 ENTREZGENE, UniProtKB/TrEMBL
  Q91XH0 ENTREZGENE
  Q9DBG6 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary A2ACG6 UniProtKB/Swiss-Prot
  Q3TKY0 UniProtKB/Swiss-Prot
  Q91XH0 UniProtKB/Swiss-Prot