Mybbp1a (MYB binding protein (P160) 1a) - Rat Genome Database

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Gene: Mybbp1a (MYB binding protein (P160) 1a) Mus musculus
Analyze
Symbol: Mybbp1a
Name: MYB binding protein (P160) 1a
RGD ID: 62354
MGI Page MGI
Description: Enables E-box binding activity and transcription corepressor activity. Involved in circadian regulation of gene expression and negative regulation of DNA-templated transcription. Acts upstream of or within respiratory electron transport chain. Located in cytoplasm and nucleolus. Part of NLS-dependent protein nuclear import complex. Is expressed in several structures, including alimentary system; brain; genitourinary system; integumental system; and limb. Orthologous to human MYBBP1A (MYB binding protein 1a).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AL024407; AU019902; myb-binding protein 1A; myb-binding protein of 160 kDa; nuclear protein P160; P160; p160M; p160MBP; p67M; p67MBP
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm17230   Gm5184   Gm5703  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391172,332,153 - 72,342,596 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1172,332,181 - 72,342,594 (+)EnsemblGRCm39 Ensembl
GRCm381172,441,327 - 72,451,770 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1172,441,355 - 72,451,768 (+)EnsemblGRCm38mm10GRCm38
MGSCv371172,254,880 - 72,265,052 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361172,257,573 - 72,267,745 (+)NCBIMGSCv36mm8
Celera1179,961,852 - 79,972,017 (+)NCBICelera
Cytogenetic Map11B4NCBI
cM Map1144.29NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
(-)-alpha-phellandrene  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (EXP)
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
2,4-dinitrotoluene  (ISO)
2,6-dinitrotoluene  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
3-chloropropane-1,2-diol  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4-amino-2,6-dinitrotoluene  (ISO)
acrolein  (ISO)
acrylamide  (ISO)
aflatoxin B1  (EXP)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (EXP)
alpha-phellandrene  (ISO)
alpha-pinene  (ISO)
ammonium chloride  (ISO)
amphetamine  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (EXP)
arsenous acid  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (EXP)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
Brodifacoum  (ISO)
caffeine  (ISO)
carbon nanotube  (EXP)
chlorpyrifos  (EXP)
chromium(6+)  (EXP)
cisplatin  (EXP,ISO)
clofibric acid  (ISO)
clozapine  (ISO)
cobalt dichloride  (ISO)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
copper(II) chloride  (ISO)
coumarin  (ISO)
CU-O LINKAGE  (ISO)
cyclosporin A  (EXP,ISO)
DDE  (ISO)
decabromodiphenyl ether  (ISO)
deoxynivalenol  (EXP)
diarsenic trioxide  (ISO)
dicrotophos  (ISO)
dioxygen  (EXP,ISO)
doxorubicin  (ISO)
enzyme inhibitor  (ISO)
ethanol  (EXP)
flutamide  (ISO)
FR900359  (ISO)
genistein  (ISO)
gentamycin  (ISO)
glafenine  (ISO)
ivermectin  (ISO)
methotrexate  (EXP)
methyl methanesulfonate  (ISO)
methylparaben  (ISO)
N-nitrosodiethylamine  (ISO)
nefazodone  (ISO)
ozone  (EXP,ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (ISO)
phenobarbital  (EXP)
pirinixic acid  (EXP)
potassium chromate  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
resveratrol  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (ISO)
sunitinib  (ISO)
temozolomide  (ISO)
tetrachloromethane  (EXP,ISO)
thapsigargin  (EXP)
thioacetamide  (ISO)
tipifarnib  (ISO)
titanium dioxide  (EXP,ISO)
trichostatin A  (ISO)
trimellitic anhydride  (EXP)
triphenyl phosphate  (ISO)
tungsten  (EXP)
urethane  (ISO)
valproic acid  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7671812   PMID:8302594   PMID:9447996   PMID:10349636   PMID:10644447   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11435708   PMID:11544199   PMID:11956195  
PMID:12477932   PMID:12520002   PMID:12769854   PMID:12941609   PMID:14681479   PMID:14691545   PMID:14744933   PMID:15345747   PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073  
PMID:17093407   PMID:17623278   PMID:17875935   PMID:17950690   PMID:18173745   PMID:18287559   PMID:18644868   PMID:19129230   PMID:19279220   PMID:19321449   PMID:20059953   PMID:20085707  
PMID:20211142   PMID:20221700   PMID:20975687   PMID:21194568   PMID:21267068   PMID:21386990   PMID:21873635   PMID:22333916   PMID:22496869   PMID:22645127   PMID:22770845   PMID:23056166  
PMID:23555303   PMID:24134843   PMID:24457600   PMID:25315684   PMID:26044184   PMID:26199344   PMID:27626380   PMID:27746211   PMID:28378742   PMID:28671696   PMID:29513653   PMID:30196744  
PMID:30409884   PMID:30550785   PMID:30595499   PMID:31040226   PMID:31162944   PMID:32325033   PMID:32434143   PMID:36114006   PMID:37142655   PMID:37253089   PMID:37298588   PMID:37839992  
PMID:38064566   PMID:38355793   PMID:38583415  


Genomics

Comparative Map Data
Mybbp1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391172,332,153 - 72,342,596 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1172,332,181 - 72,342,594 (+)EnsemblGRCm39 Ensembl
GRCm381172,441,327 - 72,451,770 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1172,441,355 - 72,451,768 (+)EnsemblGRCm38mm10GRCm38
MGSCv371172,254,880 - 72,265,052 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361172,257,573 - 72,267,745 (+)NCBIMGSCv36mm8
Celera1179,961,852 - 79,972,017 (+)NCBICelera
Cytogenetic Map11B4NCBI
cM Map1144.29NCBI
MYBBP1A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38174,538,904 - 4,555,384 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl174,538,897 - 4,555,386 (-)EnsemblGRCh38hg38GRCh38
GRCh37174,442,199 - 4,458,679 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36174,388,940 - 4,405,430 (-)NCBINCBI36Build 36hg18NCBI36
Build 34174,388,949 - 4,405,393NCBI
Celera174,454,387 - 4,470,874 (-)NCBICelera
Cytogenetic Map17p13.2NCBI
HuRef174,331,585 - 4,348,073 (-)NCBIHuRef
CHM1_1174,451,000 - 4,467,488 (-)NCBICHM1_1
T2T-CHM13v2.0174,428,802 - 4,445,280 (-)NCBIT2T-CHM13v2.0
Mybbp1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81057,555,458 - 57,565,819 (+)NCBIGRCr8
mRatBN7.21057,056,897 - 57,067,258 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1057,056,874 - 57,067,255 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1061,720,100 - 61,730,461 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01061,208,580 - 61,218,941 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01056,707,662 - 56,718,023 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01059,000,400 - 59,010,794 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1059,000,397 - 59,010,903 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01058,739,440 - 58,749,828 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41059,325,648 - 59,335,604 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11059,339,270 - 59,349,227 (+)NCBI
Celera1056,183,820 - 56,193,776 (+)NCBICelera
Cytogenetic Map10q24NCBI
Mybbp1a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546712,390,037 - 12,404,971 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546712,390,371 - 12,405,055 (+)NCBIChiLan1.0ChiLan1.0
MYBBP1A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21912,155,536 - 12,172,025 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11714,123,960 - 14,140,372 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0174,593,741 - 4,610,203 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1174,586,431 - 4,603,097 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl174,586,431 - 4,603,097 (-)Ensemblpanpan1.1panPan2
MYBBP1A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1530,528,141 - 30,538,815 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl530,526,720 - 30,539,483 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha530,724,027 - 30,735,636 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0530,628,664 - 30,640,227 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl530,628,666 - 30,640,228 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1530,594,735 - 30,607,922 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0530,553,266 - 30,564,853 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0530,726,713 - 30,738,313 (-)NCBIUU_Cfam_GSD_1.0
Mybbp1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560254,792,432 - 54,805,953 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366771,095,420 - 1,108,496 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366771,095,022 - 1,108,545 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MYBBP1A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1250,491,044 - 50,506,050 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11250,491,042 - 50,506,085 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21252,489,615 - 52,504,655 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MYBBP1A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1164,019,823 - 4,036,811 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl164,016,222 - 4,036,782 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605917,624,771 - 17,641,765 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mybbp1a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247867,103,811 - 7,118,569 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Mybbp1a
363 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1336
Count of miRNA genes:596
Interacting mature miRNAs:746
Transcripts:ENSMUST00000045633, ENSMUST00000134119, ENSMUST00000144374, ENSMUST00000144923, ENSMUST00000152894, ENSMUST00000155995, ENSMUST00000156833, ENSMUST00000162048
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226783Tibl5_mtibia length 5, 5 week (mouse)1168190826101890826Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166733420100733652Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170691198104691366Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172019649106019734Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5871926685066529Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170691198104691366Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166733420100733652Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170691198104691366Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116483033698830473Mouse
36049792Ars5_mantibody response to SARS-CoV 5, day 7, IgM (mouse)116899082672490826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116483033698830473Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115775466091754758Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115849055574754758Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15850803087695238Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116483033698830473Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170691198104691366Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166733420100733652Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115412675283733652Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
35673314Ari2_mantibody response to influenza 2, day 10, IgG3 (mouse)116899082672490826Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1301078Alcp2_malcohol preference locus 2 (mouse)Not determined117220979684731462Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166733420100733652Mouse
4142316Ity2b_mimmunity to S. typhimurium 2b (mouse)Not determined116707819179813912Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116215600596156153Mouse
36049778Ars6_mantibody response to SARS-CoV 6, day 15, IgM (mouse)116899082672490826Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
36049779Ars7_mantibody response to SARS-CoV 7, day 29, IgG1 (mouse)116899082672490826Mouse
36049790Ars3_mantibody response to SARS-CoV 3, day 7, IgG2b (mouse)116899082672490826Mouse
36049791Ars4_mantibody response to SARS-CoV 4, day 7, IgG3 (mouse)116899082672490826Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166733420100733652Mouse
36049788Ars1_mantibody response to SARS-CoV 1, day 7, IgG1 (mouse)116899082672490826Mouse
36049789Ars2_mantibody response to SARS-CoV 2, day 7, IgG2a+IgG2c (mouse)116899082672490826Mouse
36049786Ars10_mantibody response to SARS-CoV 10, 4 days post-rechallenge, IgG2a+IgG2c (mouse)116899082672490826Mouse
36049787Ars11_mantibody response to SARS-CoV 11, 4 days post-rechallenge, IgM (mouse)116899082672490826Mouse
36049784Ars8_mantibody response to SARS-CoV 8, day 29, IgG2a+IgG2c (mouse)116899082672490826Mouse
36049785Ars9_mantibody response to SARS-CoV 9, day 29, IgM (mouse)116899082672490826Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66733420100733652Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116168682088699728Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162590826109390826Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116331940781830473Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116331940794063918Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse

Markers in Region
RH136313  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381256,190,912 - 56,191,110UniSTSGRCm38
GRCm381172,451,256 - 72,451,451UniSTSGRCm38
MGSCv371172,264,758 - 72,264,953UniSTSGRCm37
MGSCv371257,291,899 - 57,292,097UniSTSGRCm37
Celera1257,339,685 - 57,339,883UniSTS
Celera1179,971,723 - 79,971,918UniSTS
Cytogenetic Map11B4UniSTS
Cytogenetic Map12C1UniSTS
cM Map1140.0UniSTS
RH125539  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381172,451,272 - 72,451,376UniSTSGRCm38
MGSCv371172,264,774 - 72,264,878UniSTSGRCm37
Celera1179,971,739 - 79,971,843UniSTS
Cytogenetic Map11B4UniSTS
cM Map1140.0UniSTS
UniSTS:236851  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381256,190,476 - 56,190,737UniSTSGRCm38
GRCm381172,450,720 - 72,451,082UniSTSGRCm38
MGSCv371172,264,222 - 72,264,584UniSTSGRCm37
MGSCv371257,291,463 - 57,291,724UniSTSGRCm37
Celera1257,339,249 - 57,339,510UniSTS
Celera1179,971,187 - 79,971,549UniSTS
Cytogenetic Map11B4UniSTS
Cytogenetic Map12C1UniSTS
cM Map1140.0UniSTS


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_016776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF345640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF345929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK083908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK143469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK143487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK149747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK155074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK187734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL662812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC004078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC015070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC020280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC048858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC052889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC060167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ305435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN716759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U63648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000045633   ⟹   ENSMUSP00000044827
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1172,332,181 - 72,342,594 (+)Ensembl
GRCm38.p6 Ensembl1172,441,355 - 72,451,768 (+)Ensembl
Ensembl Acc Id: ENSMUST00000134119
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1172,334,598 - 72,335,389 (+)Ensembl
GRCm38.p6 Ensembl1172,443,772 - 72,444,563 (+)Ensembl
Ensembl Acc Id: ENSMUST00000144374
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1172,339,043 - 72,341,831 (+)Ensembl
GRCm38.p6 Ensembl1172,448,217 - 72,451,005 (+)Ensembl
Ensembl Acc Id: ENSMUST00000144923
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1172,341,400 - 72,341,928 (+)Ensembl
GRCm38.p6 Ensembl1172,450,574 - 72,451,102 (+)Ensembl
Ensembl Acc Id: ENSMUST00000152894
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1172,332,181 - 72,342,594 (+)Ensembl
GRCm38.p6 Ensembl1172,441,355 - 72,451,768 (+)Ensembl
Ensembl Acc Id: ENSMUST00000155995
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1172,340,464 - 72,341,532 (+)Ensembl
GRCm38.p6 Ensembl1172,449,638 - 72,450,706 (+)Ensembl
Ensembl Acc Id: ENSMUST00000156833
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1172,332,203 - 72,334,399 (+)Ensembl
GRCm38.p6 Ensembl1172,441,377 - 72,443,573 (+)Ensembl
Ensembl Acc Id: ENSMUST00000162048
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1172,332,183 - 72,342,055 (+)Ensembl
GRCm38.p6 Ensembl1172,441,357 - 72,451,229 (+)Ensembl
RefSeq Acc Id: NM_016776   ⟹   NP_058056
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391172,332,153 - 72,342,596 (+)NCBI
GRCm381172,441,327 - 72,451,770 (+)NCBI
MGSCv371172,254,880 - 72,265,052 (+)RGD
Celera1179,961,852 - 79,972,017 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_058056   ⟸   NM_016776
- UniProtKB: Q8R4X2 (UniProtKB/Swiss-Prot),   Q80Y66 (UniProtKB/Swiss-Prot),   O35851 (UniProtKB/Swiss-Prot),   Q99KP0 (UniProtKB/Swiss-Prot),   Q7TPV4 (UniProtKB/Swiss-Prot),   Q3U2W2 (UniProtKB/TrEMBL),   A0JLT5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000044827   ⟸   ENSMUST00000045633

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q7TPV4-F1-model_v2 AlphaFold Q7TPV4 1-1344 view protein structure

Promoters
RGD ID:6821355
Promoter ID:MM_KWN:8320
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000100899,   OTTMUST00000013809,   OTTMUST00000018358,   OTTMUST00000018359
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361172,254,516 - 72,255,016 (+)MPROMDB
RGD ID:6821361
Promoter ID:MM_KWN:8321
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell
Transcripts:OTTMUST00000018363
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361172,256,961 - 72,257,461 (+)MPROMDB
RGD ID:6821363
Promoter ID:MM_KWN:8322
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Liver,   Lung
Transcripts:OTTMUST00000018362
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361172,260,921 - 72,261,737 (+)MPROMDB
RGD ID:6821360
Promoter ID:MM_KWN:8323
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Lung
Transcripts:OTTMUST00000018361
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361172,262,686 - 72,263,186 (+)MPROMDB
RGD ID:6821362
Promoter ID:MM_KWN:8324
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Liver,   Lung
Transcripts:OTTMUST00000018360
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361172,263,571 - 72,264,187 (+)MPROMDB
RGD ID:8675440
Promoter ID:EPDNEW_M15751
Type:initiation region
Name:Mybbp1a_1
Description:Mus musculus MYB binding protein 1a , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381172,441,370 - 72,441,430EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:106181 AgrOrtholog
Ensembl Genes ENSMUSG00000040463 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000045633 ENTREZGENE
  ENSMUST00000045633.6 UniProtKB/Swiss-Prot
InterPro ARM-type_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DNA_pol_V/MYBBP1A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:18432 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:106181 ENTREZGENE
NCBI Gene 18432 ENTREZGENE
PANTHER MYB-BINDING PROTEIN 1A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR13213 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DNA_pol_phi UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Mybbp1a PhenoGen
Superfamily-SCOP SSF48371 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0JLT5 ENTREZGENE, UniProtKB/TrEMBL
  MBB1A_MOUSE UniProtKB/Swiss-Prot
  O35851 ENTREZGENE
  Q3TLF6_MOUSE UniProtKB/TrEMBL
  Q3U2W2 ENTREZGENE, UniProtKB/TrEMBL
  Q7TPV4 ENTREZGENE
  Q80Y66 ENTREZGENE
  Q8R4X2 ENTREZGENE
  Q99KP0 ENTREZGENE
UniProt Secondary O35851 UniProtKB/Swiss-Prot
  Q80Y66 UniProtKB/Swiss-Prot
  Q8R4X2 UniProtKB/Swiss-Prot
  Q99KP0 UniProtKB/Swiss-Prot