Rpl9 (ribosomal protein L9) - Rat Genome Database

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Gene: Rpl9 (ribosomal protein L9) Mus musculus
Analyze
Symbol: Rpl9
Name: ribosomal protein L9
RGD ID: 62341
MGI Page MGI
Description: A structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Predicted to act upstream of or within translation. Located in cytoplasm. Part of cytosolic large ribosomal subunit. Is active in synapse. Orthologous to human RPL9 (ribosomal protein L9).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 60S ribosomal protein L9; large ribosomal subunit protein uL6; MGC102393
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm11736   Gm12110   Gm12738   Gm12741   Gm12795   Gm14231   Gm14562   Gm14607   Gm15539   Gm17014   Gm17965   Gm17973   Gm17977   Gm18072   Gm2497   Gm4600   Gm6028   Gm6450   Gm8959   Gm9159   Rpl9-ps1   Rpl9-ps2   Rpl9-ps3   Rpl9-ps4   Rpl9-ps5   Rpl9-ps6   Rpl9-ps7   Rpl9-ps8   Rpl9-ps9  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39565,545,707 - 65,548,774 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl565,545,707 - 65,548,787 (-)EnsemblGRCm39 Ensembl
GRCm38565,388,364 - 65,391,431 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl565,388,364 - 65,391,444 (-)EnsemblGRCm38mm10GRCm38
MGSCv37565,779,603 - 65,782,670 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36565,667,500 - 65,670,127 (-)NCBIMGSCv36mm8
Celera562,665,042 - 62,668,109 (-)NCBICelera
Cytogenetic Map5C3.1NCBI
cM Map533.66NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Structures of the human and Drosophila 80S ribosome. Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome. Ko MS, etal., Hum Mol Genet 1998 Nov;7(12):1967-78.
4. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
5. MGDs mouse GO annotations MGD data from the GO Consortium
6. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7600302   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12904583   PMID:14610273   PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073  
PMID:16452087   PMID:16582619   PMID:21529712   PMID:21873635   PMID:23135726   PMID:23665500   PMID:24457600   PMID:25901680   PMID:26584622   PMID:28378742   PMID:29518331   PMID:30457570  
PMID:30550785   PMID:30595499   PMID:32325033   PMID:32434143   PMID:32554809   PMID:35059969   PMID:36114006   PMID:36517592  


Genomics

Comparative Map Data
Rpl9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39565,545,707 - 65,548,774 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl565,545,707 - 65,548,787 (-)EnsemblGRCm39 Ensembl
GRCm38565,388,364 - 65,391,431 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl565,388,364 - 65,391,444 (-)EnsemblGRCm38mm10GRCm38
MGSCv37565,779,603 - 65,782,670 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36565,667,500 - 65,670,127 (-)NCBIMGSCv36mm8
Celera562,665,042 - 62,668,109 (-)NCBICelera
Cytogenetic Map5C3.1NCBI
cM Map533.66NCBI
RPL9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38439,454,124 - 39,458,922 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl439,452,587 - 39,458,931 (-)EnsemblGRCh38hg38GRCh38
GRCh37439,455,744 - 39,460,542 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36439,132,139 - 39,136,963 (-)NCBINCBI36Build 36hg18NCBI36
Build 34439,278,312 - 39,283,103NCBI
Celera439,893,571 - 39,898,396 (-)NCBICelera
Cytogenetic Map4p14NCBI
HuRef438,780,734 - 38,785,561 (-)NCBIHuRef
CHM1_1439,455,196 - 39,460,021 (-)NCBICHM1_1
T2T-CHM13v2.0439,423,773 - 39,428,574 (-)NCBIT2T-CHM13v2.0
Rpl9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81443,247,536 - 43,250,784 (+)NCBIGRCr8
mRatBN7.21442,893,945 - 42,897,140 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1442,893,942 - 42,897,136 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl39,583,796 - 9,584,625 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1443,247,901 - 43,251,110 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01444,547,820 - 44,551,031 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01443,027,937 - 43,031,148 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01444,524,419 - 44,527,613 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1444,524,416 - 44,527,613 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01444,343,832 - 44,347,026 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41476,274,247 - 76,274,951 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11445,595,501 - 45,598,265 (+)NCBI
Celera1442,044,585 - 42,047,779 (+)NCBICelera
Cytogenetic Map14p11NCBI
Rpl9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554437,907,628 - 7,912,472 (+)NCBIChiLan1.0ChiLan1.0
RPL9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2339,643,523 - 39,648,358 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1439,835,560 - 39,840,380 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0433,782,911 - 33,787,737 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1439,635,067 - 39,639,897 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl439,635,067 - 39,639,810 (-)Ensemblpanpan1.1panPan2
RPL9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1372,989,526 - 72,993,944 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl372,989,592 - 72,993,949 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha375,536,388 - 75,540,806 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0373,762,952 - 73,767,372 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl373,763,031 - 73,769,192 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1373,029,545 - 73,033,963 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0373,175,818 - 73,180,235 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0373,562,350 - 73,566,771 (+)NCBIUU_Cfam_GSD_1.0
Rpl9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528539,229,936 - 39,234,941 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049364827,063,294 - 7,068,235 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl830,694,388 - 30,699,189 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1830,693,198 - 30,699,189 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2832,308,212 - 32,314,218 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RPL9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12710,850,523 - 10,855,303 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604757,242,697 - 57,247,408 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpl9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248704,825,786 - 4,830,404 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248704,825,745 - 4,830,404 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rpl9
39 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1148
Count of miRNA genes:494
Interacting mature miRNAs:593
Transcripts:ENSMUST00000057885, ENSMUST00000118543, ENSMUST00000120094, ENSMUST00000127874, ENSMUST00000128074, ENSMUST00000140879, ENSMUST00000147660, ENSMUST00000147966, ENSMUST00000150815, ENSMUST00000151917
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301693Sle6_msystemic lupus erythematosus susceptibility 6 (mouse)Not determined5889069387841837Mouse
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
11353827Hplq1_mhot plate latency 1 (mouse)53157045865570458Mouse
4140990Lgq6_mlate growth QTL 6 (mouse)Not determined32133234100777931Mouse
4141219W10q16_mweight 10 weeks QTL 16 (mouse)Not determined32133234100777931Mouse
10043995Hbnr9_mHeligmosomoides bakeri nematode resistance 9 (mouse)Not determined53348866767488876Mouse
1301845Lxw4_mlupus BXSB x NZW 4 (mouse)Not determined53569446269694594Mouse
11049561Lmr24e_mleishmaniasis resistance 24e (mouse)53569446269694594Mouse
11049559Lmr24c_mleishmaniasis resistance 24c (mouse)53569446269694594Mouse
11049558Lmr24b_mleishmaniasis resistance 24b (mouse)53569446269694594Mouse
1301223Hdlq7_mHDL QTL 7 (mouse)Not determined53585456869854714Mouse
13464252Ahl10_mage related hearing loss, early onset 10 (mouse)53585456869854714Mouse
4141647Hrvhf1_mheart rate variability, high frequency 1 (mouse)Not determined3643342370433423Mouse
1301170Lith13_mlithogenic gene 13 (mouse)Not determined53649448670494598Mouse
1301524Lmb2_mlupus in MRL and B6 F2 cross (mouse)Not determined537581488112465722Mouse
13464246Ahl11_mage related hearing loss, early onset 11 (mouse)53764377771643896Mouse
1300951Gbvq1_mgallstone bladder volume QTL 1 (mouse)Not determined53811168172111798Mouse
13464245Ahl12_mage related hearing loss, early onset 12 (mouse)53811168172111798Mouse
1301698Pcfm4_mperiosteal circumference and femur length 4 (mouse)Not determined54458584378585965Mouse
13207584Mwmlpt4_mMorris water maze latency to platform, training, 4 (mouse)54632260680322606Mouse
13207588Mwmlpa4_mMorris water maze latency to platform, all, 4 (mouse)54632260680322606Mouse
14746981Manh57_mmandible shape 57 (mouse)54716974281169742Mouse
11041665Lmr24_mleishmaniasis resistance 24 (mouse)552694462107321041Mouse
11041899Lmr24a_mleishmaniasis resistance 24a (mouse)552694462107321041Mouse
4142064Tmc1m4_mTmc1 modifier 4 (mouse)Not determined554500177127001072Mouse
1301243Bmd2_mbone mineral density 2 (mouse)Not determined555388334100455525Mouse
4142317Rgcs1_mretinal ganglion cell susceptible 1 (mouse)Not determined55388334108762627Mouse
13464248Ahl13_mage related hearing loss, early onset 13 (mouse)55564587489645995Mouse
10043962Obq27_mobesity QTL 27 (mouse)Not determined55628565590285655Mouse
10044005Ahl7_mage related hearing loss 7 (mouse)Not determined55833050292330641Mouse
11040591Lmr3c_mleishmaniasis resistance 3c (mouse)55960280193602980Mouse
11040592Lmr3d_mleishmaniasis resistance 3d (mouse)55960280193602980Mouse
11040589Lmr3a_mleishmaniasis resistance 3a (mouse)55960280193602980Mouse
11040590Lmr3b_mleishmaniasis resistance 3b (mouse)55960280193602980Mouse
1301843Listr1_mlisteriosis resistance 1 (mouse)Not determined56024608194246203Mouse
13464247Ahl14_mage related hearing loss, early onset 14 (mouse)56040306294403160Mouse
11252124Modvl6_mmodifier of vacuolated lens 6 (mouse)56265056896650688Mouse
4142428Modvl1_mmodifier of vacuolated lens 1 (mouse)Not determined6265056896650688Mouse
1301010ahl2_mage related hearing loss 2 (mouse)Not determined56265056896650688Mouse
13464250Ahl15_mage related hearing loss, early onset 15 (mouse)56265056896650688Mouse
10045972Tir5_mtrypanosome infection response 5 (mouse)Not determined563705442104387065Mouse
11049560Lmr24d_mleishmaniasis resistance 24d (mouse)56437487798374996Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_011292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC136513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF260271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK012331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK012445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK017388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK017427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK050296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK053431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK084278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK088166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC013165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC069963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC081435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC083166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC083329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC086937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC089319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC093526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY072215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U17331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U17332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000057885   ⟹   ENSMUSP00000109399
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl565,545,707 - 65,548,787 (-)Ensembl
GRCm38.p6 Ensembl565,388,364 - 65,391,444 (-)Ensembl
RefSeq Acc Id: ENSMUST00000118543   ⟹   ENSMUSP00000113391
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl565,545,707 - 65,548,348 (-)Ensembl
GRCm38.p6 Ensembl565,388,364 - 65,391,005 (-)Ensembl
RefSeq Acc Id: ENSMUST00000120094   ⟹   ENSMUSP00000113704
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl565,545,821 - 65,548,723 (-)Ensembl
GRCm38.p6 Ensembl565,388,478 - 65,391,380 (-)Ensembl
RefSeq Acc Id: ENSMUST00000127874   ⟹   ENSMUSP00000115577
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl565,545,707 - 65,548,742 (-)Ensembl
GRCm38.p6 Ensembl565,388,364 - 65,391,399 (-)Ensembl
RefSeq Acc Id: ENSMUST00000128074
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl565,546,260 - 65,548,334 (-)Ensembl
GRCm38.p6 Ensembl565,388,917 - 65,390,991 (-)Ensembl
RefSeq Acc Id: ENSMUST00000140879
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl565,545,708 - 65,548,741 (-)Ensembl
GRCm38.p6 Ensembl565,388,365 - 65,391,398 (-)Ensembl
RefSeq Acc Id: ENSMUST00000147660
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl565,546,020 - 65,548,724 (-)Ensembl
GRCm38.p6 Ensembl565,388,677 - 65,391,381 (-)Ensembl
RefSeq Acc Id: ENSMUST00000147966
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl565,545,750 - 65,546,716 (-)Ensembl
GRCm38.p6 Ensembl565,388,407 - 65,389,373 (-)Ensembl
RefSeq Acc Id: ENSMUST00000150815   ⟹   ENSMUSP00000143264
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl565,545,707 - 65,548,176 (-)Ensembl
GRCm38.p6 Ensembl565,388,364 - 65,390,833 (-)Ensembl
RefSeq Acc Id: ENSMUST00000151917
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl565,545,707 - 65,546,257 (-)Ensembl
GRCm38.p6 Ensembl565,388,364 - 65,388,914 (-)Ensembl
RefSeq Acc Id: ENSMUST00000196667   ⟹   ENSMUSP00000142883
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl565,545,721 - 65,548,329 (-)Ensembl
GRCm38.p6 Ensembl565,388,378 - 65,390,986 (-)Ensembl
RefSeq Acc Id: NM_011292   ⟹   NP_035422
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39565,545,707 - 65,548,774 (-)NCBI
GRCm38565,388,364 - 65,391,431 (-)ENTREZGENE
MGSCv37565,779,603 - 65,782,670 (-)RGD
Celera562,665,042 - 62,668,109 (-)RGD
cM Map5 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_035422 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA85685 (Get FASTA)   NCBI Sequence Viewer  
  AAA85686 (Get FASTA)   NCBI Sequence Viewer  
  AAF70508 (Get FASTA)   NCBI Sequence Viewer  
  AAH13165 (Get FASTA)   NCBI Sequence Viewer  
  AAH81435 (Get FASTA)   NCBI Sequence Viewer  
  AAH83166 (Get FASTA)   NCBI Sequence Viewer  
  AAH83329 (Get FASTA)   NCBI Sequence Viewer  
  AAH86937 (Get FASTA)   NCBI Sequence Viewer  
  AAH89319 (Get FASTA)   NCBI Sequence Viewer  
  AAH93526 (Get FASTA)   NCBI Sequence Viewer  
  BAB28167 (Get FASTA)   NCBI Sequence Viewer  
  BAB28244 (Get FASTA)   NCBI Sequence Viewer  
  BAB30725 (Get FASTA)   NCBI Sequence Viewer  
  BAB30739 (Get FASTA)   NCBI Sequence Viewer  
  BAC39154 (Get FASTA)   NCBI Sequence Viewer  
  BAC40185 (Get FASTA)   NCBI Sequence Viewer  
  BAE32097 (Get FASTA)   NCBI Sequence Viewer  
  BAE35531 (Get FASTA)   NCBI Sequence Viewer  
  BAE40265 (Get FASTA)   NCBI Sequence Viewer  
  BAE40988 (Get FASTA)   NCBI Sequence Viewer  
  EDL37736 (Get FASTA)   NCBI Sequence Viewer  
  EDL37738 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000109399
  ENSMUSP00000109399.3
  ENSMUSP00000113391.2
  ENSMUSP00000113704.2
  ENSMUSP00000115577.3
  ENSMUSP00000142883.2
  ENSMUSP00000143264.2
GenBank Protein P51410 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_035422   ⟸   NM_011292
- UniProtKB: Q9JK58 (UniProtKB/Swiss-Prot),   P51410 (UniProtKB/Swiss-Prot),   Q5EBQ6 (UniProtKB/TrEMBL),   A0A140T8T4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000143264   ⟸   ENSMUST00000150815
RefSeq Acc Id: ENSMUSP00000113391   ⟸   ENSMUST00000118543
RefSeq Acc Id: ENSMUSP00000115577   ⟸   ENSMUST00000127874
RefSeq Acc Id: ENSMUSP00000113704   ⟸   ENSMUST00000120094
RefSeq Acc Id: ENSMUSP00000142883   ⟸   ENSMUST00000196667
RefSeq Acc Id: ENSMUSP00000109399   ⟸   ENSMUST00000057885
Protein Domains
Large ribosomal subunit protein uL6 alpha-beta

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P51410-F1-model_v2 AlphaFold P51410 1-192 view protein structure

Promoters
RGD ID:6886772
Promoter ID:EPDNEW_M6834
Type:initiation region
Name:Rpl9_1
Description:Mus musculus ribosomal protein L9 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38565,391,400 - 65,391,460EPDNEW
RGD ID:6838272
Promoter ID:MM_KWN:42379
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   Brain,   ES_Cell,   Kidney,   Liver,   MEF_B6
Transcripts:OTTMUST00000070290,   OTTMUST00000070291
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36565,779,946 - 65,781,582 (-)MPROMDB
RGD ID:6838303
Promoter ID:MM_KWN:42380
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000118543,   ENSMUST00000120094,   OTTMUST00000070247,   OTTMUST00000070248,   OTTMUST00000070250,   OTTMUST00000070257,   OTTMUST00000070284,   OTTMUST00000070286,   OTTMUST00000070292,   UC008XNO.1,   UC008XNR.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36565,781,661 - 65,782,912 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1298373 AgrOrtholog
Ensembl Genes ENSMUSG00000047215 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000057885 ENTREZGENE
  ENSMUST00000057885.13 UniProtKB/Swiss-Prot
  ENSMUST00000118543.8 UniProtKB/TrEMBL
  ENSMUST00000120094.5 UniProtKB/Swiss-Prot
  ENSMUST00000127874.6 UniProtKB/TrEMBL
  ENSMUST00000150815.6 UniProtKB/TrEMBL
  ENSMUST00000196667.5 UniProtKB/TrEMBL
Gene3D-CATH 3.90.930.12 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ribosomal_L6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_L6_a/b-dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_L6_a/b-dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_L6_CS2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:20005 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1298373 ENTREZGENE
NCBI Gene 20005 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11655 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ribosomal_L6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rpl9 PhenoGen
PIRSF Ribosomal_L6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE RIBOSOMAL_L6_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF56053 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JES3_MOUSE UniProtKB/TrEMBL
  A0A0G2JFQ3_MOUSE UniProtKB/TrEMBL
  A0A140T8T4 ENTREZGENE
  D3YZT0_MOUSE UniProtKB/TrEMBL
  D3Z629_MOUSE UniProtKB/TrEMBL
  P51410 ENTREZGENE
  Q5EBQ6 ENTREZGENE, UniProtKB/TrEMBL
  Q5M9J5_MOUSE UniProtKB/TrEMBL
  Q9JK58 ENTREZGENE
  RL9_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q9JK58 UniProtKB/Swiss-Prot