Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Sepsis | | ISO | RPL9 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:27978524 | |
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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Sepsis | | ISO | RPL9 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:27978524 | |
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# | Reference Title | Reference Citation |
1. | Structures of the human and Drosophila 80S ribosome. | Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104. |
2. | Functional annotation of a full-length mouse cDNA collection. | Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90. |
3. | Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome. | Ko MS, etal., Hum Mol Genet 1998 Nov;7(12):1967-78. |
4. | Electronic Transfer of Homolog Data | MGD and Homologene mouse data transfer |
5. | MGDs mouse GO annotations | MGD data from the GO Consortium |
6. | Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. | Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73. |
7. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
8. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
PMID:7600302 | PMID:10349636 | PMID:10922068 | PMID:11042159 | PMID:11076861 | PMID:12477932 | PMID:12904583 | PMID:14610273 | PMID:15489334 | PMID:15782199 | PMID:16141072 | PMID:16141073 |
PMID:16452087 | PMID:16582619 | PMID:21529712 | PMID:21873635 | PMID:23135726 | PMID:23665500 | PMID:24457600 | PMID:25901680 | PMID:26584622 | PMID:28378742 | PMID:29518331 | PMID:30457570 |
PMID:30550785 | PMID:30595499 | PMID:32325033 | PMID:32434143 | PMID:32554809 | PMID:35059969 | PMID:36114006 | PMID:36517592 |
Rpl9 (Mus musculus - house mouse) |
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RPL9 (Homo sapiens - human) |
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Rpl9 (Rattus norvegicus - Norway rat) |
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Rpl9 (Chinchilla lanigera - long-tailed chinchilla) |
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RPL9 (Pan paniscus - bonobo/pygmy chimpanzee) |
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RPL9 (Canis lupus familiaris - dog) |
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Rpl9 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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RPL9 (Sus scrofa - pig) |
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RPL9 (Chlorocebus sabaeus - green monkey) |
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Rpl9 (Heterocephalus glaber - naked mole-rat) |
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Variants in Rpl9
39 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
RefSeq Transcripts | NM_011292 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
GenBank Nucleotide | AC136513 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
AF260271 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK012331 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK012445 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK017388 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK017427 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK050296 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK053431 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK084278 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK088166 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK153562 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK159980 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK168326 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK169217 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK191132 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK204218 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC013165 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC069963 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC081435 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC083166 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC083329 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC086937 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC089319 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC093526 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BY072215 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH466524 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
U17331 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
U17332 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSMUST00000057885 ⟹ ENSMUSP00000109399 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000118543 ⟹ ENSMUSP00000113391 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000120094 ⟹ ENSMUSP00000113704 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000127874 ⟹ ENSMUSP00000115577 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000128074 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000140879 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000147660 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000147966 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000150815 ⟹ ENSMUSP00000143264 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000151917 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000196667 ⟹ ENSMUSP00000142883 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | NM_011292 ⟹ NP_035422 | ||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||
Position: |
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Sequence: |
Protein RefSeqs | NP_035422 | (Get FASTA) | NCBI Sequence Viewer |
GenBank Protein | AAA85685 | (Get FASTA) | NCBI Sequence Viewer |
AAA85686 | (Get FASTA) | NCBI Sequence Viewer | |
AAF70508 | (Get FASTA) | NCBI Sequence Viewer | |
AAH13165 | (Get FASTA) | NCBI Sequence Viewer | |
AAH81435 | (Get FASTA) | NCBI Sequence Viewer | |
AAH83166 | (Get FASTA) | NCBI Sequence Viewer | |
AAH83329 | (Get FASTA) | NCBI Sequence Viewer | |
AAH86937 | (Get FASTA) | NCBI Sequence Viewer | |
AAH89319 | (Get FASTA) | NCBI Sequence Viewer | |
AAH93526 | (Get FASTA) | NCBI Sequence Viewer | |
BAB28167 | (Get FASTA) | NCBI Sequence Viewer | |
BAB28244 | (Get FASTA) | NCBI Sequence Viewer | |
BAB30725 | (Get FASTA) | NCBI Sequence Viewer | |
BAB30739 | (Get FASTA) | NCBI Sequence Viewer | |
BAC39154 | (Get FASTA) | NCBI Sequence Viewer | |
BAC40185 | (Get FASTA) | NCBI Sequence Viewer | |
BAE32097 | (Get FASTA) | NCBI Sequence Viewer | |
BAE35531 | (Get FASTA) | NCBI Sequence Viewer | |
BAE40265 | (Get FASTA) | NCBI Sequence Viewer | |
BAE40988 | (Get FASTA) | NCBI Sequence Viewer | |
EDL37736 | (Get FASTA) | NCBI Sequence Viewer | |
EDL37738 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSMUSP00000109399 | ||
ENSMUSP00000109399.3 | |||
ENSMUSP00000113391.2 | |||
ENSMUSP00000113704.2 | |||
ENSMUSP00000115577.3 | |||
ENSMUSP00000142883.2 | |||
ENSMUSP00000143264.2 | |||
GenBank Protein | P51410 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_035422 ⟸ NM_011292 |
- UniProtKB: | Q9JK58 (UniProtKB/Swiss-Prot), P51410 (UniProtKB/Swiss-Prot), Q5EBQ6 (UniProtKB/TrEMBL), A0A140T8T4 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | ENSMUSP00000143264 ⟸ ENSMUST00000150815 |
RefSeq Acc Id: | ENSMUSP00000113391 ⟸ ENSMUST00000118543 |
RefSeq Acc Id: | ENSMUSP00000115577 ⟸ ENSMUST00000127874 |
RefSeq Acc Id: | ENSMUSP00000113704 ⟸ ENSMUST00000120094 |
RefSeq Acc Id: | ENSMUSP00000142883 ⟸ ENSMUST00000196667 |
RefSeq Acc Id: | ENSMUSP00000109399 ⟸ ENSMUST00000057885 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-P51410-F1-model_v2 | AlphaFold | P51410 | 1-192 | view protein structure |
RGD ID: | 6886772 | ||||||||
Promoter ID: | EPDNEW_M6834 | ||||||||
Type: | initiation region | ||||||||
Name: | Rpl9_1 | ||||||||
Description: | Mus musculus ribosomal protein L9 , mRNA. | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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RGD ID: | 6838272 | ||||||||
Promoter ID: | MM_KWN:42379 | ||||||||
Type: | CpG-Island | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, BoneMarrow_0Hour, Brain, ES_Cell, Kidney, Liver, MEF_B6 | ||||||||
Transcripts: | OTTMUST00000070290, OTTMUST00000070291 | ||||||||
Position: |
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RGD ID: | 6838303 | ||||||||
Promoter ID: | MM_KWN:42380 | ||||||||
Type: | CpG-Island | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | 3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, 3T3L1_Day6, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen | ||||||||
Transcripts: | ENSMUST00000118543, ENSMUST00000120094, OTTMUST00000070247, OTTMUST00000070248, OTTMUST00000070250, OTTMUST00000070257, OTTMUST00000070284, OTTMUST00000070286, OTTMUST00000070292, UC008XNO.1, UC008XNR.1 | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | MGI:1298373 | AgrOrtholog |
Ensembl Genes | ENSMUSG00000047215 | Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Ensembl Transcript | ENSMUST00000057885 | ENTREZGENE |
ENSMUST00000057885.13 | UniProtKB/Swiss-Prot | |
ENSMUST00000118543.8 | UniProtKB/TrEMBL | |
ENSMUST00000120094.5 | UniProtKB/Swiss-Prot | |
ENSMUST00000127874.6 | UniProtKB/TrEMBL | |
ENSMUST00000150815.6 | UniProtKB/TrEMBL | |
ENSMUST00000196667.5 | UniProtKB/TrEMBL | |
Gene3D-CATH | 3.90.930.12 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
InterPro | Ribosomal_L6 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Ribosomal_L6_a/b-dom | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Ribosomal_L6_a/b-dom_sf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Ribosomal_L6_CS2 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
KEGG Report | mmu:20005 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
MGD | MGI:1298373 | ENTREZGENE |
NCBI Gene | 20005 | ENTREZGENE |
PANTHER | 60S RIBOSOMAL PROTEIN L9 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PTHR11655 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Pfam | Ribosomal_L6 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PhenoGen | Rpl9 | PhenoGen |
PIRSF | Ribosomal_L6 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PROSITE | RIBOSOMAL_L6_2 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Superfamily-SCOP | SSF56053 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
UniProt | A0A0G2JES3_MOUSE | UniProtKB/TrEMBL |
A0A0G2JFQ3_MOUSE | UniProtKB/TrEMBL | |
A0A140T8T4 | ENTREZGENE | |
D3YZT0_MOUSE | UniProtKB/TrEMBL | |
D3Z629_MOUSE | UniProtKB/TrEMBL | |
P51410 | ENTREZGENE | |
Q5EBQ6 | ENTREZGENE, UniProtKB/TrEMBL | |
Q5M9J5_MOUSE | UniProtKB/TrEMBL | |
Q9JK58 | ENTREZGENE | |
RL9_MOUSE | UniProtKB/Swiss-Prot | |
UniProt Secondary | Q9JK58 | UniProtKB/Swiss-Prot |