Ptbp1 (polypyrimidine tract binding protein 1) - Rat Genome Database

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Gene: Ptbp1 (polypyrimidine tract binding protein 1) Mus musculus
Analyze
Symbol: Ptbp1
Name: polypyrimidine tract binding protein 1
RGD ID: 62339
MGI Page MGI
Description: Enables RNA binding activity. Involved in negative regulation of mRNA splicing, via spliceosome and negative regulation of neuron differentiation. Acts upstream of with a negative effect on gene expression. Acts upstream of or within neurogenesis and positive regulation of transcription by RNA polymerase II. Located in nucleus. Is expressed in several structures, including brain; central nervous system ganglion; connective tissue; genitourinary system; and sensory organ. Orthologous to human PTBP1 (polypyrimidine tract binding protein 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AA407203; AL033359; D12Mgi4; heterogeneous nuclear ribonucleoprotein I; hnRNP I; HNRPI; polypyrimidine tract-binding protein 1; pPTB; Pt; Ptb; PTB-1; PTB2; PTB3; PTB4
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm14451   Gm14452   Gm18773   Gm18815   Gm2639   Gm4900   Gm8424  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391079,690,502 - 79,700,269 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1079,690,261 - 79,700,605 (+)EnsemblGRCm39 Ensembl
GRCm381079,854,432 - 79,864,435 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1079,854,427 - 79,864,771 (+)EnsemblGRCm38mm10GRCm38
MGSCv371079,317,350 - 79,327,178 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361079,257,809 - 79,267,900 (+)NCBIMGSCv36mm8
Celera1080,869,418 - 80,879,246 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,6-dinitrotoluene  (ISO)
2-methylcholine  (ISO)
3',5'-cyclic UMP  (ISO)
3-chloropropane-1,2-diol  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
7,12-dimethyltetraphene  (ISO)
aconitine  (ISO)
acrolein  (ISO)
acrylamide  (EXP,ISO)
AM-251  (ISO)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (EXP)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (EXP)
bisphenol A  (ISO)
bleomycin A2  (ISO)
bortezomib  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (EXP)
cefaloridine  (ISO)
CGP 52608  (ISO)
choline  (EXP)
chrysene  (EXP)
cisplatin  (ISO)
clofibric acid  (ISO)
cobalt dichloride  (ISO)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
coumarin  (ISO)
coumestrol  (ISO)
Cuprizon  (ISO)
diallyl trisulfide  (ISO)
diazinon  (ISO)
dibutyl phthalate  (ISO)
dicrotophos  (ISO)
dorsomorphin  (ISO)
Enterolactone  (ISO)
enzyme inhibitor  (ISO)
epoxiconazole  (EXP)
fenthion  (EXP)
flutamide  (ISO)
folic acid  (EXP)
FR900359  (ISO)
gentamycin  (ISO)
glutathione  (ISO)
hydrogen cyanide  (EXP)
isoflavones  (ISO)
ivermectin  (ISO)
L-methionine  (EXP)
lead(0)  (ISO)
lipopolysaccharide  (ISO)
mercury atom  (EXP)
mercury(0)  (EXP)
Mesaconitine  (ISO)
methidathion  (EXP)
methotrexate  (ISO)
N-methyl-4-phenylpyridinium  (EXP)
N-nitrosodiethylamine  (EXP,ISO)
ozone  (ISO)
paracetamol  (EXP)
pentachlorophenol  (EXP)
perfluorooctanoic acid  (EXP)
phenobarbital  (EXP)
PhIP  (ISO)
potassium cyanide  (EXP)
quercetin  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (EXP)
sodium fluoride  (EXP)
Soman  (ISO)
testosterone enanthate  (ISO)
tetrachloromethane  (EXP)
tetraphene  (EXP)
thapsigargin  (ISO)
thioacetamide  (ISO)
trimellitic anhydride  (EXP)
triptonide  (EXP)
urethane  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
neuron projection terminus  (ISO)
nucleus  (IBA,IDA,IPI)

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Genetic mapping of 262 loci derived from expressed sequences in a murine interspecific cross using single-strand conformational polymorphism analysis. Brady KP, etal., Genome Res 1997 Nov;7(11):1085-93.
2. Age-associated alteration of gene expression patterns in mouse oocytes. Hamatani T, etal., Hum Mol Genet 2004 Oct 1;13(19):2263-78. Epub 2004 Aug 18.
3. Alternative splicing: a pivotal step between eukaryotic transcription and translation. Kornblihtt AR, etal., Nat Rev Mol Cell Biol. 2013 Mar;14(3):153-65. doi: 10.1038/nrm3525. Epub 2013 Feb 6.
4. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
5. MGDs mouse GO annotations MGD data from the GO Consortium
6. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7. Comparative maps of human 19p13.3 and mouse chromosome 10 allow identification of sequences at evolutionary breakpoints. Puttagunta R, etal., Genome Res 2000 Sep;10(9):1369-80.
8. Mouse MP Annotation Import Pipeline RGD automated import pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1722210   PMID:7671812   PMID:8654585   PMID:8889548   PMID:10349636   PMID:10716735   PMID:10725249   PMID:10829067   PMID:11003644   PMID:11042159   PMID:11076861   PMID:11217851  
PMID:11231079   PMID:11724819   PMID:11739782   PMID:11781313   PMID:11895477   PMID:12213192   PMID:12477932   PMID:12520002   PMID:12574126   PMID:12904583   PMID:14633994   PMID:14657238  
PMID:15604097   PMID:15670747   PMID:15782199   PMID:15830352   PMID:16033648   PMID:16051233   PMID:16141072   PMID:16141073   PMID:17329592   PMID:17606642   PMID:17679093   PMID:17967808  
PMID:18061163   PMID:18779873   PMID:18799693   PMID:19010962   PMID:19075228   PMID:19667078   PMID:19843185   PMID:20133837   PMID:21063464   PMID:21233130   PMID:21267068   PMID:21423341  
PMID:21518792   PMID:21677750   PMID:21768390   PMID:21873635   PMID:22246437   PMID:22661231   PMID:22705452   PMID:23313552   PMID:23636947   PMID:23937658   PMID:24457600   PMID:24530304  
PMID:24552714   PMID:25219497   PMID:25375251   PMID:25540577   PMID:25800779   PMID:26391954   PMID:26496610   PMID:26705333   PMID:26857472   PMID:27134173   PMID:27565344   PMID:27573846  
PMID:27791185   PMID:27926877   PMID:28296893   PMID:28378742   PMID:29140550   PMID:29358707   PMID:29449584   PMID:29581187   PMID:29990503   PMID:30053257   PMID:30196744   PMID:30333137  
PMID:30401736   PMID:30416150   PMID:30476084   PMID:30496473   PMID:30594394   PMID:30595499   PMID:31499192   PMID:32081131   PMID:32324218   PMID:32325033   PMID:32529543   PMID:32554809  
PMID:32624547   PMID:32710818   PMID:32774357   PMID:32967200   PMID:32968282   PMID:33230847   PMID:33284593   PMID:33421118   PMID:33982775   PMID:34214192   PMID:34854215   PMID:35253879  
PMID:35460072   PMID:35535997   PMID:35545054   PMID:35664063   PMID:35705044   PMID:35705053   PMID:35787431   PMID:35858420   PMID:36114006   PMID:36417873   PMID:36484118   PMID:36718792  
PMID:36721028   PMID:36744439   PMID:36788730   PMID:37002228   PMID:37805473   PMID:37866478  


Genomics

Comparative Map Data
Ptbp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391079,690,502 - 79,700,269 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1079,690,261 - 79,700,605 (+)EnsemblGRCm39 Ensembl
GRCm381079,854,432 - 79,864,435 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1079,854,427 - 79,864,771 (+)EnsemblGRCm38mm10GRCm38
MGSCv371079,317,350 - 79,327,178 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361079,257,809 - 79,267,900 (+)NCBIMGSCv36mm8
Celera1080,869,418 - 80,879,246 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
PTBP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3819797,452 - 812,312 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl19797,075 - 812,327 (+)EnsemblGRCh38hg38GRCh38
GRCh3719797,452 - 812,312 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3619748,411 - 763,327 (+)NCBINCBI36Build 36hg18NCBI36
Build 3419748,410 - 763,327NCBI
Celera193,882 - 18,816 (-)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef19566,615 - 581,055 (+)NCBIHuRef
CHM1_119796,984 - 811,921 (+)NCBICHM1_1
T2T-CHM13v2.019751,931 - 766,786 (+)NCBIT2T-CHM13v2.0
Ptbp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8710,493,199 - 10,502,957 (-)NCBIGRCr8
mRatBN7.279,842,574 - 9,852,332 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl79,842,574 - 9,852,397 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx712,723,282 - 12,733,019 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0714,601,365 - 14,611,102 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0712,461,256 - 12,471,001 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0712,663,965 - 12,673,723 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl712,663,965 - 12,673,718 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0712,833,687 - 12,843,445 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4711,355,538 - 11,365,188 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera78,017,276 - 8,027,027 (-)NCBICelera
Cytogenetic Map7q11NCBI
Ptbp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554956,987,182 - 7,002,492 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554956,990,565 - 7,002,492 (-)NCBIChiLan1.0ChiLan1.0
PTBP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2205,128,176 - 5,143,164 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1194,366,061 - 4,381,063 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v019319,953 - 334,945 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.119766,372 - 781,888 (+)NCBIpanpan1.1PanPan1.1panPan2
PTBP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12057,806,450 - 57,818,435 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2057,807,826 - 57,818,359 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2057,608,475 - 57,620,432 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02058,548,741 - 58,560,735 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2058,548,741 - 58,560,697 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12057,603,413 - 57,615,372 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02058,083,168 - 58,095,128 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02058,286,193 - 58,298,155 (-)NCBIUU_Cfam_GSD_1.0
Ptbp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118217,507,888 - 217,518,465 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936588316,167 - 327,044 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936588316,348 - 326,895 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PTBP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl277,551,562 - 77,563,134 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1277,551,562 - 77,563,153 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2278,360,161 - 78,371,916 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PTBP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.16546,010 - 560,086 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl6545,964 - 562,630 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660818,365,736 - 8,379,517 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ptbp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248287,750,323 - 7,762,589 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248287,750,419 - 7,762,645 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ptbp1
219 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3825
Count of miRNA genes:805
Interacting mature miRNAs:1061
Transcripts:ENSMUST00000057343, ENSMUST00000095457, ENSMUST00000099958, ENSMUST00000164385, ENSMUST00000165153, ENSMUST00000165704, ENSMUST00000165724, ENSMUST00000168216, ENSMUST00000168683, ENSMUST00000168988, ENSMUST00000169091, ENSMUST00000169483, ENSMUST00000169580, ENSMUST00000171216, ENSMUST00000171599, ENSMUST00000172282
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357740Obsty3_mobesity 3 (mouse)Not determined108235478116190980Mouse
1301386Sysbp1_msystolic blood pressure 1 (mouse)Not determined101010826587401095Mouse
1357825Kidpq2_mkidney weight percentage QTL 2 (mouse)Not determined101270405184079784Mouse
1357656Hrtq3_mheart weight QTL 3 (mouse)Not determined101270405184079784Mouse
1357864Scfpq1_msubcutaneous fat pad percentage QTL 1 (mouse)Not determined101270405184079784Mouse
39128215Lwq17_mliver weight QTL 17 (mouse)101270405184079784Mouse
4141956Egq7_mearly growth QTL 7 (mouse)Not determined1270405184079784Mouse
4141943W6q6_mweight 6 weeks QTL 6 (mouse)Not determined1270405184079784Mouse
4142272W10q5_mweight 10 weeks QTL 5 (mouse)Not determined1270405184079784Mouse
4142380W3q11_mweight 3 weeks QTL 11 (mouse)Not determined1270405184079784Mouse
1302067Scc9_mcolon tumor susceptibility 9 (mouse)Not determined1018259333125575232Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1018875748129635869Mouse
1558757Eae34_mexperimental allergic encephalomyelitis susceptibility 34 (mouse)Not determined1021408154114217230Mouse
26884403Cvht8_mcranial vault height 8, 16 week (mouse)102287589991035862Mouse
26884426Cvht1_mcranial vault height 1, 5 week (mouse)1024675898121035905Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039175996129635869Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039175996129635869Mouse
26884411Bzwq8_mbi-zygomatic width QTL 8, 10 week (mouse)1044876096115935905Mouse
26884407Bzwq14_mbi-zygomatic width QTL 14, 16 wee (mouse)1045476096120635905Mouse
4142313Angvq1_mangiogenesis by VEGF QTL 1 (mouse)Not determined4672040382491121Mouse
1302150Bbaa18_mB.burgdorferi-associated arthritis 18 (mouse)Not determined104933801283338157Mouse
10045641Jckm3_mjuvenile cystic kidney modifier 3 (mouse)Not determined104984818783848412Mouse
1300597Skull14_mskull morphology 14 (mouse)Not determined104984818783848412Mouse
4142169Pbwg16_mpostnatal body weight growth 16 (mouse)Not determined104984818783848412Mouse
1357737Hpcr2_mhepatocarcinogen resistance 2 (mouse)Not determined104984822283848397Mouse
1301966Lifespan2_mlife span 2 (mouse)Not determined104984822283848397Mouse
1301502Eae17_msusceptibility to experimental allergic encephalomyelitis 17 (mouse)Not determined105109149085091639Mouse
1300882Ath17_matherosclerosis 17 (mouse)Not determined105109149085091639Mouse
1301380Cia8_mcollagen induced arthritis QTL 8 (mouse)Not determined105149340082491121Mouse
14746991Manh68_mmandible shape 68 (mouse)105228049786280497Mouse
1301787Bsc1_mbrain size control 1 (mouse)Not determined105851696992517096Mouse
26884450Sklq15_mskull length QTL 15, 16 week (mouse)1059335822122335905Mouse
13208560Wght9_mweight 9 (mouse)1059835822120835905Mouse
26884424Zlq9_mzygomatic length QTL 9, 16 week (mouse)1063935779115935905Mouse
1302060El3_mepilepsy 3 (mouse)Not determined106549093899491121Mouse
1300533Aem3_manti-erythrocyte autoantibody modifier 3 (mouse)Not determined106549093899491121Mouse
1301737Insq9_minsulin QTL 9 (mouse)Not determined106549093899491121Mouse
1302035Lmb4_mlupus in MRL and B6 F2 cross (mouse)Not determined106684818792258673Mouse
26884447Sklq9_mskull length QTL 9, 10 week (mouse)1067335830111735905Mouse
26884430Zlq5_mzygomatic length QTL 5, 10 week (mouse)1067835830124835905Mouse
26884405Huml2_mhumerus length 2, 5 week (mouse)1069735830130430862Mouse
11039497Ltpr5a_mLeishmania tropica response 5a (mouse)1073506901107507047Mouse
4142107Obrq12_mobesity resistance QTL 12 (mouse)Not determined7398721682491121Mouse
11353832Pcholq4_mplasma cholesterol QTL 4 (mouse)1073987216125515907Mouse
11353843Gluq1_mblood glucose QTL 1 (mouse)1073987216125515907Mouse
1357632Vtbt9_mvertebral trabecular bone trait 9 (mouse)Not determined1075338568109338767Mouse
4142137Femwf3_mfemur work to failure 3 (mouse)Not determined75338568109338767Mouse
1300975Fembrs3_mfemur breaking strength 3 (mouse)Not determined1075338568109338767Mouse
11251717Siim1_mstress induced immobility 1 (mouse)1078381268112381268Mouse

Markers in Region
Ptbp1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10C1UniSTS
cM Map1043.0UniSTS
RH124575  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10C1UniSTS
cM Map1043.0UniSTS
UniSTS:236919  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381298,218,427 - 98,218,621UniSTSGRCm38
GRCm381079,864,115 - 79,864,309UniSTSGRCm38
MGSCv371299,456,637 - 99,456,831UniSTSGRCm37
MGSCv371079,326,860 - 79,327,054UniSTSGRCm37
Celera1080,878,928 - 80,879,122UniSTS
Celera1299,444,899 - 99,445,093UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map12EUniSTS
cM Map1043.0UniSTS
cM Map1248.0UniSTS
Ptb  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381079,864,239 - 79,864,399UniSTSGRCm38
MGSCv371079,326,984 - 79,327,144UniSTSGRCm37
Celera1080,879,052 - 80,879,212UniSTS
Cytogenetic Map10C1UniSTS
cM Map1043.0UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001077363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001283013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001407385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001407387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001407389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001407391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001407393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_008956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_176355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_176356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_176357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB074753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB074764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC151846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI843041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK033319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK037607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK041143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK043824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK044956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK050498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK051669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK053926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK082600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK088126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK088483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK149941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK172712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK187502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK187634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK187795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK192876 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK220042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC006069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC006666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC007472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC008531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC028848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC066210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC086489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY167466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA977830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ075278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X52101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000057343   ⟹   ENSMUSP00000059481
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1079,690,486 - 79,699,258 (+)Ensembl
GRCm38.p6 Ensembl1079,854,652 - 79,863,424 (+)Ensembl
RefSeq Acc Id: ENSMUST00000095457   ⟹   ENSMUSP00000093109
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1079,690,502 - 79,700,193 (+)Ensembl
GRCm38.p6 Ensembl1079,854,668 - 79,864,359 (+)Ensembl
RefSeq Acc Id: ENSMUST00000099958
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1079,690,475 - 79,695,447 (+)Ensembl
GRCm38.p6 Ensembl1079,854,641 - 79,859,613 (+)Ensembl
RefSeq Acc Id: ENSMUST00000164385
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1079,697,572 - 79,698,884 (+)Ensembl
GRCm38.p6 Ensembl1079,861,738 - 79,863,050 (+)Ensembl
RefSeq Acc Id: ENSMUST00000165153
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1079,690,467 - 79,699,652 (+)Ensembl
GRCm38.p6 Ensembl1079,854,633 - 79,863,818 (+)Ensembl
RefSeq Acc Id: ENSMUST00000165704   ⟹   ENSMUSP00000127783
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1079,690,463 - 79,700,605 (+)Ensembl
GRCm38.p6 Ensembl1079,854,629 - 79,864,771 (+)Ensembl
RefSeq Acc Id: ENSMUST00000165724   ⟹   ENSMUSP00000130749
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1079,695,484 - 79,698,887 (+)Ensembl
GRCm38.p6 Ensembl1079,859,650 - 79,863,053 (+)Ensembl
RefSeq Acc Id: ENSMUST00000168216
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1079,690,501 - 79,694,878 (+)Ensembl
GRCm38.p6 Ensembl1079,854,667 - 79,859,044 (+)Ensembl
RefSeq Acc Id: ENSMUST00000168683   ⟹   ENSMUSP00000132383
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1079,690,872 - 79,694,930 (+)Ensembl
GRCm38.p6 Ensembl1079,855,038 - 79,859,096 (+)Ensembl
RefSeq Acc Id: ENSMUST00000168988
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1079,690,439 - 79,695,546 (+)Ensembl
GRCm38.p6 Ensembl1079,854,605 - 79,859,712 (+)Ensembl
RefSeq Acc Id: ENSMUST00000169091   ⟹   ENSMUSP00000128449
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1079,694,606 - 79,695,221 (+)Ensembl
GRCm38.p6 Ensembl1079,858,772 - 79,859,387 (+)Ensembl
RefSeq Acc Id: ENSMUST00000169483   ⟹   ENSMUSP00000127507
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1079,690,501 - 79,695,198 (+)Ensembl
GRCm38.p6 Ensembl1079,854,667 - 79,859,364 (+)Ensembl
RefSeq Acc Id: ENSMUST00000169580
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1079,697,851 - 79,700,266 (+)Ensembl
GRCm38.p6 Ensembl1079,862,017 - 79,864,432 (+)Ensembl
RefSeq Acc Id: ENSMUST00000171216
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1079,694,828 - 79,695,959 (+)Ensembl
GRCm38.p6 Ensembl1079,858,994 - 79,860,125 (+)Ensembl
RefSeq Acc Id: ENSMUST00000171599   ⟹   ENSMUSP00000131296
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1079,690,499 - 79,694,848 (+)Ensembl
GRCm38.p6 Ensembl1079,854,665 - 79,859,014 (+)Ensembl
RefSeq Acc Id: ENSMUST00000172282   ⟹   ENSMUSP00000126192
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1079,690,261 - 79,700,266 (+)Ensembl
GRCm38.p6 Ensembl1079,854,427 - 79,864,432 (+)Ensembl
RefSeq Acc Id: NM_001077363   ⟹   NP_001070831
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391079,690,502 - 79,700,269 (+)NCBI
GRCm381079,854,432 - 79,864,435 (+)NCBI
MGSCv371079,317,350 - 79,327,178 (+)RGD
Celera1080,869,245 - 80,879,248 (+)NCBI
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001283013   ⟹   NP_001269942
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391079,690,502 - 79,700,269 (+)NCBI
GRCm381079,854,432 - 79,864,435 (+)NCBI
Celera1080,869,245 - 80,879,248 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001407385   ⟹   NP_001394314
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391079,690,502 - 79,700,269 (+)NCBI
RefSeq Acc Id: NM_001407387   ⟹   NP_001394316
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391079,690,869 - 79,700,269 (+)NCBI
RefSeq Acc Id: NM_001407389   ⟹   NP_001394318
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391079,690,502 - 79,700,269 (+)NCBI
RefSeq Acc Id: NM_001407391   ⟹   NP_001394320
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391079,690,502 - 79,700,269 (+)NCBI
RefSeq Acc Id: NM_001407393   ⟹   NP_001394322
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391079,690,869 - 79,700,269 (+)NCBI
RefSeq Acc Id: NM_008956   ⟹   NP_032982
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391079,690,502 - 79,700,269 (+)NCBI
GRCm381079,854,432 - 79,864,435 (+)NCBI
MGSCv371079,317,350 - 79,327,178 (+)RGD
Celera1080,869,245 - 80,879,248 (+)NCBI
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_176355
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391079,690,502 - 79,700,269 (+)NCBI
RefSeq Acc Id: NR_176356
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391079,690,502 - 79,700,269 (+)NCBI
RefSeq Acc Id: NR_176357
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391079,690,502 - 79,700,269 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001070831 (Get FASTA)   NCBI Sequence Viewer  
  NP_001269942 (Get FASTA)   NCBI Sequence Viewer  
  NP_001394314 (Get FASTA)   NCBI Sequence Viewer  
  NP_001394316 (Get FASTA)   NCBI Sequence Viewer  
  NP_001394318 (Get FASTA)   NCBI Sequence Viewer  
  NP_001394320 (Get FASTA)   NCBI Sequence Viewer  
  NP_001394322 (Get FASTA)   NCBI Sequence Viewer  
  NP_032982 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH06666 (Get FASTA)   NCBI Sequence Viewer  
  AAH07472 (Get FASTA)   NCBI Sequence Viewer  
  AAH28848 (Get FASTA)   NCBI Sequence Viewer  
  AAH66210 (Get FASTA)   NCBI Sequence Viewer  
  AAH86489 (Get FASTA)   NCBI Sequence Viewer  
  BAB86943 (Get FASTA)   NCBI Sequence Viewer  
  BAC28230 (Get FASTA)   NCBI Sequence Viewer  
  BAC29560 (Get FASTA)   NCBI Sequence Viewer  
  BAC30837 (Get FASTA)   NCBI Sequence Viewer  
  BAC31665 (Get FASTA)   NCBI Sequence Viewer  
  BAC32158 (Get FASTA)   NCBI Sequence Viewer  
  BAC34292 (Get FASTA)   NCBI Sequence Viewer  
  BAC34712 (Get FASTA)   NCBI Sequence Viewer  
  BAC38544 (Get FASTA)   NCBI Sequence Viewer  
  BAC40161 (Get FASTA)   NCBI Sequence Viewer  
  BAC40383 (Get FASTA)   NCBI Sequence Viewer  
  BAC65159 (Get FASTA)   NCBI Sequence Viewer  
  BAE29183 (Get FASTA)   NCBI Sequence Viewer  
  BAE29899 (Get FASTA)   NCBI Sequence Viewer  
  BAE30277 (Get FASTA)   NCBI Sequence Viewer  
  BAE32096 (Get FASTA)   NCBI Sequence Viewer  
  BAE37269 (Get FASTA)   NCBI Sequence Viewer  
  BAE40295 (Get FASTA)   NCBI Sequence Viewer  
  BAE43140 (Get FASTA)   NCBI Sequence Viewer  
  CAA36321 (Get FASTA)   NCBI Sequence Viewer  
  EDL31643 (Get FASTA)   NCBI Sequence Viewer  
  EDL31645 (Get FASTA)   NCBI Sequence Viewer  
  EDL31646 (Get FASTA)   NCBI Sequence Viewer  
  EDL31647 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000059481.10
  ENSMUSP00000093109
  ENSMUSP00000093109.5
  ENSMUSP00000126192
  ENSMUSP00000126192.2
  ENSMUSP00000127507.2
  ENSMUSP00000127783
  ENSMUSP00000127783.2
  ENSMUSP00000128449.2
  ENSMUSP00000130749.2
  ENSMUSP00000131296.2
  ENSMUSP00000132383.2
GenBank Protein P17225 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_001070831   ⟸   NM_001077363
- Peptide Label: isoform 1
- UniProtKB: Q8BGJ5 (UniProtKB/Swiss-Prot),   P17225 (UniProtKB/Swiss-Prot),   Q922I7 (UniProtKB/TrEMBL),   Q5RJV5 (UniProtKB/TrEMBL),   Q6NZB8 (UniProtKB/TrEMBL),   Q8K144 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_032982   ⟸   NM_008956
- Peptide Label: isoform 2
- UniProtKB: Q3T984 (UniProtKB/TrEMBL),   Q3UBR5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001269942   ⟸   NM_001283013
- Peptide Label: isoform 3
- UniProtKB: Q8CB58 (UniProtKB/TrEMBL),   Q3T984 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000126192   ⟸   ENSMUST00000172282
RefSeq Acc Id: ENSMUSP00000131296   ⟸   ENSMUST00000171599
RefSeq Acc Id: ENSMUSP00000127783   ⟸   ENSMUST00000165704
RefSeq Acc Id: ENSMUSP00000130749   ⟸   ENSMUST00000165724
RefSeq Acc Id: ENSMUSP00000127507   ⟸   ENSMUST00000169483
RefSeq Acc Id: ENSMUSP00000128449   ⟸   ENSMUST00000169091
RefSeq Acc Id: ENSMUSP00000093109   ⟸   ENSMUST00000095457
RefSeq Acc Id: ENSMUSP00000132383   ⟸   ENSMUST00000168683
RefSeq Acc Id: ENSMUSP00000059481   ⟸   ENSMUST00000057343
RefSeq Acc Id: NP_001394318   ⟸   NM_001407389
- Peptide Label: isoform 5
- UniProtKB: Q3U5I2 (UniProtKB/TrEMBL),   Q5RJV5 (UniProtKB/TrEMBL),   Q6NZB8 (UniProtKB/TrEMBL),   Q8K144 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001394314   ⟸   NM_001407385
- Peptide Label: isoform 4
- UniProtKB: Q5RJV5 (UniProtKB/TrEMBL),   Q6NZB8 (UniProtKB/TrEMBL),   Q8K144 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001394320   ⟸   NM_001407391
- Peptide Label: isoform 6
- UniProtKB: Q3T984 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001394316   ⟸   NM_001407387
- Peptide Label: isoform 4
- UniProtKB: Q5RJV5 (UniProtKB/TrEMBL),   Q6NZB8 (UniProtKB/TrEMBL),   Q8K144 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001394322   ⟸   NM_001407393
- Peptide Label: isoform 6
- UniProtKB: Q3T984 (UniProtKB/TrEMBL)
Protein Domains
RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P17225-F1-model_v2 AlphaFold P17225 1-527 view protein structure

Promoters
RGD ID:6819773
Promoter ID:MM_KWN:4792
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day6,   BoneMarrow_4Hour,   Brain,   Lung,   MEF_B4,   MEF_B6
Transcripts:NM_001077363,   NM_008956,   UC007GAD.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361079,317,194 - 79,317,694 (+)MPROMDB
RGD ID:6819772
Promoter ID:MM_KWN:4793
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000057343
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361079,318,446 - 79,319,707 (+)MPROMDB
RGD ID:6846772
Promoter ID:MM_ACW:5321
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   Brain,   Kidney,   MEF_B4
Transcripts:PTBP1.JSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361079,321,779 - 79,322,279 (+)MPROMDB
RGD ID:6846773
Promoter ID:MM_ACW:5322
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:PTBP1.FSEP07,   PTBP1.ISEP07,   PTBP1.NSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361079,322,301 - 79,325,232 (+)MPROMDB
RGD ID:8672560
Promoter ID:EPDNEW_M14310
Type:initiation region
Name:Ptbp1_1
Description:Mus musculus polypyrimidine tract binding protein 1 , transcriptvariant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381079,854,668 - 79,854,728EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:97791 AgrOrtholog
Ensembl Genes ENSMUSG00000006498 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000057343.16 UniProtKB/TrEMBL
  ENSMUST00000095457 ENTREZGENE
  ENSMUST00000095457.11 UniProtKB/TrEMBL
  ENSMUST00000165704 ENTREZGENE
  ENSMUST00000165704.8 UniProtKB/Swiss-Prot
  ENSMUST00000165724.8 UniProtKB/TrEMBL
  ENSMUST00000168683.2 UniProtKB/TrEMBL
  ENSMUST00000169091.2 UniProtKB/TrEMBL
  ENSMUST00000169483.8 UniProtKB/TrEMBL
  ENSMUST00000171599.8 UniProtKB/TrEMBL
  ENSMUST00000172282 ENTREZGENE
  ENSMUST00000172282.8 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.70.330 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro HnRNP-L/PTB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTBP1_RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTBP1_RRM1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTBP1_RRM3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:19205 UniProtKB/Swiss-Prot
MGD MGI:97791 ENTREZGENE
NCBI Gene 19205 ENTREZGENE
PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  POLYPYRIMIDINE TRACT-BINDING PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ptbp1 PhenoGen
PROSITE RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt E9PZ39_MOUSE UniProtKB/TrEMBL
  E9Q0W3_MOUSE UniProtKB/TrEMBL
  E9Q279_MOUSE UniProtKB/TrEMBL
  E9QMW9_MOUSE UniProtKB/TrEMBL
  F7AXP1_MOUSE UniProtKB/TrEMBL
  F7DCW4_MOUSE UniProtKB/TrEMBL
  P17225 ENTREZGENE, UniProtKB/Swiss-Prot
  Q3T984 ENTREZGENE, UniProtKB/TrEMBL
  Q3TQW3_MOUSE UniProtKB/TrEMBL
  Q3U5I2 ENTREZGENE, UniProtKB/TrEMBL
  Q3UBR5 ENTREZGENE, UniProtKB/TrEMBL
  Q5RJV5 ENTREZGENE, UniProtKB/TrEMBL
  Q6NZB8 ENTREZGENE, UniProtKB/TrEMBL
  Q80T07_MOUSE UniProtKB/TrEMBL
  Q8BGJ5 ENTREZGENE
  Q8C2R5_MOUSE UniProtKB/TrEMBL
  Q8CB58 ENTREZGENE, UniProtKB/TrEMBL
  Q8K144 ENTREZGENE, UniProtKB/TrEMBL
  Q8R509_MOUSE UniProtKB/TrEMBL
  Q922I7 ENTREZGENE
  Q923A7_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q8BGJ5 UniProtKB/Swiss-Prot
  Q922I7 UniProtKB/Swiss-Prot