Dctn1 (dynactin 1) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Dctn1 (dynactin 1) Mus musculus
Analyze
Symbol: Dctn1
Name: dynactin 1
RGD ID: 62330
Description: Exhibits microtubule binding activity. Involved in melanosome transport. Localizes to cell leading edge; microtubule cytoskeleton; and protein-containing complex. Predicted to colocalize with retromer complex. Is expressed in brain; embryo; and head. Human ortholog(s) of this gene implicated in Perry syndrome; amyotrophic lateral sclerosis type 1; and distal hereditary motor neuronopathy type 7B. Orthologous to human DCTN1 (dynactin subunit 1); PARTICIPATES IN mitochondria transport pathway; N-cadherin signaling pathway; Huntington's disease pathway; INTERACTS WITH 1,2-dimethylhydrazine; 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 150 kDa dynein-associated polypeptide; AL022633; DAP-150; DP-150; dynactin 1, retrograde axonal transport; dynactin subunit 1; Glue; Glued; p15; p150; p150-glued; p150
Orthologs:
Homo sapiens (human) : DCTN1 (dynactin subunit 1)  HGNC  Alliance
Rattus norvegicus (Norway rat) : Dctn1 (dynactin subunit 1)  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Dctn1 (dynactin subunit 1)
Pan paniscus (bonobo/pygmy chimpanzee) : DCTN1 (dynactin subunit 1)
Canis lupus familiaris (dog) : DCTN1 (dynactin subunit 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Dctn1 (dynactin subunit 1)
Sus scrofa (pig) : DCTN1 (dynactin subunit 1)
Chlorocebus sabaeus (African green monkey) : DCTN1 (dynactin subunit 1)
Heterocephalus glaber (naked mole-rat) : Dctn1 (dynactin subunit 1)
more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39683,142,702 - 83,177,100 (+)NCBI
GRCm38683,165,909 - 83,200,118 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl683,165,920 - 83,200,117 (+)EnsemblGRCm38mm10GRCm38
MGSCv37683,129,583 - 83,150,112 (+)NCBIGRCm37mm9NCBIm37
MGSCv36683,145,512 - 83,165,628 (+)NCBImm8
Celera685,162,534 - 85,183,062 (+)NCBICelera
Cytogenetic Map6C3NCBI
cM Map635.94NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:7671812   PMID:9070275   PMID:9144527   PMID:9806835   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11172053   PMID:11217851   PMID:11544199   PMID:12466851   PMID:12477932  
PMID:12520002   PMID:14581450   PMID:14610273   PMID:15208636   PMID:15242649   PMID:15311282   PMID:15782199   PMID:15987939   PMID:16141072   PMID:16141073   PMID:16632484   PMID:16954346  
PMID:17287360   PMID:17600711   PMID:17932487   PMID:18094236   PMID:18331715   PMID:18477476   PMID:18615096   PMID:18782860   PMID:18799693   PMID:19075109   PMID:19874786   PMID:20019668  
PMID:20360068   PMID:20360680   PMID:21177258   PMID:21677750   PMID:21703543   PMID:21873635   PMID:21961240   PMID:22073305   PMID:22275436   PMID:22442722   PMID:22542186   PMID:22777741  
PMID:22826121   PMID:22887640   PMID:22956769   PMID:23386061   PMID:23523350   PMID:23673330   PMID:23897889   PMID:24457600   PMID:25189619   PMID:25342295   PMID:25533844   PMID:25552654  
PMID:25915474   PMID:26496610   PMID:26765568   PMID:27103069   PMID:27507650   PMID:27565344   PMID:28671696   PMID:29273399   PMID:29490687   PMID:30086304   PMID:30335684   PMID:30457570  
PMID:30562941   PMID:30718399   PMID:30787442   PMID:30923192   PMID:31833472   PMID:32325033  


Genomics

Comparative Map Data
Dctn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39683,142,702 - 83,177,100 (+)NCBI
GRCm38683,165,909 - 83,200,118 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl683,165,920 - 83,200,117 (+)EnsemblGRCm38mm10GRCm38
MGSCv37683,129,583 - 83,150,112 (+)NCBIGRCm37mm9NCBIm37
MGSCv36683,145,512 - 83,165,628 (+)NCBImm8
Celera685,162,534 - 85,183,062 (+)NCBICelera
Cytogenetic Map6C3NCBI
cM Map635.94NCBI
DCTN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl274,361,154 - 74,392,087 (-)EnsemblGRCh38hg38GRCh38
GRCh38274,361,155 - 74,391,866 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37274,588,281 - 74,619,214 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36274,441,790 - 74,461,472 (-)NCBINCBI36hg18NCBI36
Celera274,419,471 - 74,450,404 (-)NCBI
Cytogenetic Map2p13.1NCBI
HuRef274,324,594 - 74,355,527 (-)NCBIHuRef
CHM1_1274,517,708 - 74,548,641 (-)NCBICHM1_1
Dctn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.04114,876,770 - 114,896,567 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4114,876,770 - 114,896,573 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04179,465,836 - 179,485,633 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44117,390,323 - 117,410,119 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14117,634,803 - 117,654,601 (+)NCBI
Celera4104,678,158 - 104,697,955 (+)NCBICelera
Cytogenetic Map4q34NCBI
Dctn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542411,392,812 - 11,413,140 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542411,362,240 - 11,413,140 (+)NCBIChiLan1.0ChiLan1.0
DCTN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A75,934,408 - 75,965,012 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A75,934,752 - 75,953,296 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A74,428,060 - 74,458,574 (-)NCBIMhudiblu_PPA_v0panPan3
DCTN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1748,728,270 - 48,759,147 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11748,728,096 - 48,759,187 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dctn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936556601,550 - 632,321 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DCTN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl368,643,247 - 68,673,604 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1368,642,562 - 68,673,605 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2371,751,232 - 71,779,855 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DCTN1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl1432,885,623 - 32,916,145 (+)Ensembl
ChlSab1.11432,885,483 - 32,916,491 (+)NCBI
Dctn1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474929,105,310 - 29,135,124 (+)NCBI

Position Markers
RH125419  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3811115,657,228 - 115,657,424UniSTSGRCm38
GRCm38683,199,878 - 83,200,074UniSTSGRCm38
MGSCv37683,149,872 - 83,150,068UniSTSGRCm37
MGSCv3711115,518,542 - 115,518,738UniSTSGRCm37
Celera11127,425,476 - 127,425,672UniSTS
Celera685,182,822 - 85,183,018UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map6C3UniSTS
cM Map1175.0UniSTS
cM Map634.9UniSTS
D6Umi3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38683,185,222 - 83,185,403UniSTSGRCm38
MGSCv37683,135,216 - 83,135,397UniSTSGRCm37
Celera685,168,157 - 85,168,338UniSTS
Cytogenetic Map6C3UniSTS
cM Map638.87UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487426034Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63866962592607450Mouse
1300618Pgia19_mproteoglycan induced arthritis 19 (mouse)Not determined64531405987426034Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1301254Skts11_mskin tumor susceptibility 11 (mouse)Not determined65117915085179300Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
4141028Mclr_mmethylcholanthrene lymphoma resistance (mouse)Not determined5437342788379171Mouse
15039373Adip28_madiposity 28 (mouse)65630821190308211Mouse
15039375Bw41_mbody weight QTL 41 (mouse)65630821190308211Mouse
1558977Skmw10_mskeletal muscle weight 10 (mouse)Not determined65844758392447710Mouse
10043972Obq28_mobesity QTL 28 (mouse)Not determined65854043392540433Mouse
1301740Bwq2_mbody weight QTL 2 (mouse)Not determined66005768094057799Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66348473897484905Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666713869100714031Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670425898104426034Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670425898104426034Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670425898104426034Mouse
4141990Etax6_methanol induced ataxia 6 (mouse)Not determined7132262186275719Mouse
1302020Bbaa20_mB.burgdorferi-associated arthritis 20 (mouse)Not determined67132262193464093Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671575060105575178Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671981024105981170Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671981024105981170Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673500000134700000Mouse
1301320Ots1_movarian teratoma susceptibility 1 (mouse)Not determined675447583104503555Mouse
1301571Arrd1_mage-related retinal degeneration 1 (mouse)Not determined67554435692607450Mouse
1300674Nidd3n_mnon-insulin-dependent diabetes mellitus 3 in NSY (mouse)Not determined67554435694225955Mouse
10412195Efw_mepididymal fat weight (mouse)Not determined67554435694225955Mouse
10043901Pfat5_mpredicted fat percentage 5 (mouse)Not determined675607306109607450Mouse
10412208Cypr4_mcytokine production 4 (mouse)Not determined675716503109716697Mouse
1357875Pfat2_mpredicted fat percentage 2 (mouse)Not determined676463949110464093Mouse
14697704Stsl4_mSalmonella typhimurium susceptibility locus 4 (mouse)67710000090000000Mouse
13824985Alh1_mamplitude of lateral head displacement 1 (mouse)67800000097000000Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678629504121115387Mouse
14696731Pairq1_mP. aeruginosa infection resistance QTL 1 (mouse)681500000102200000Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3335
Count of miRNA genes:682
Interacting mature miRNAs:866
Transcripts:ENSMUST00000077407, ENSMUST00000113907, ENSMUST00000113913, ENSMUST00000113918, ENSMUST00000113919, ENSMUST00000123313, ENSMUST00000127824, ENSMUST00000130212, ENSMUST00000130917, ENSMUST00000141680, ENSMUST00000153793, ENSMUST00000154420
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001198866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001198867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001347310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_007835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017321379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC007636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC160400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK157867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK172261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK187538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199428 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC066061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY198890 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY235563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF162175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ210377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U60312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000077407   ⟹   ENSMUSP00000076623
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl683,165,920 - 83,200,116 (+)Ensembl
RefSeq Acc Id: ENSMUST00000113907   ⟹   ENSMUSP00000109540
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl683,185,946 - 83,200,117 (+)Ensembl
RefSeq Acc Id: ENSMUST00000113913   ⟹   ENSMUSP00000109546
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl683,165,951 - 83,200,117 (+)Ensembl
RefSeq Acc Id: ENSMUST00000113918   ⟹   ENSMUSP00000109551
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl683,179,589 - 83,200,116 (+)Ensembl
RefSeq Acc Id: ENSMUST00000113919   ⟹   ENSMUSP00000109552
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl683,179,586 - 83,199,970 (+)Ensembl
RefSeq Acc Id: ENSMUST00000123313
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl683,188,611 - 83,189,607 (+)Ensembl
RefSeq Acc Id: ENSMUST00000127824
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl683,194,344 - 83,195,580 (+)Ensembl
RefSeq Acc Id: ENSMUST00000130212   ⟹   ENSMUSP00000115838
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl683,166,004 - 83,189,582 (+)Ensembl
RefSeq Acc Id: ENSMUST00000130917
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl683,195,102 - 83,196,068 (+)Ensembl
RefSeq Acc Id: ENSMUST00000141680   ⟹   ENSMUSP00000121538
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl683,179,613 - 83,189,153 (+)Ensembl
RefSeq Acc Id: ENSMUST00000153793
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl683,197,014 - 83,198,616 (+)Ensembl
RefSeq Acc Id: ENSMUST00000154420
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl683,194,543 - 83,195,287 (+)Ensembl
RefSeq Acc Id: NM_001198866   ⟹   NP_001185795
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39683,142,906 - 83,177,099 (+)NCBI
GRCm38683,165,924 - 83,200,117 (+)NCBI
Celera685,148,828 - 85,183,062 (+)ENTREZGENE
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001198867   ⟹   NP_001185796
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39683,142,906 - 83,177,099 (+)NCBI
GRCm38683,165,924 - 83,200,117 (+)NCBI
Celera685,148,828 - 85,183,062 (+)ENTREZGENE
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001347310   ⟹   NP_001334239
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39683,162,928 - 83,177,099 (+)NCBI
GRCm38683,185,946 - 83,200,117 (+)NCBI
Sequence:
RefSeq Acc Id: NM_007835   ⟹   NP_031861
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39683,156,571 - 83,177,100 (+)NCBI
GRCm38683,179,589 - 83,200,118 (+)NCBI
MGSCv37683,129,583 - 83,150,112 (+)RGD
Celera685,148,828 - 85,183,062 (+)ENTREZGENE
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006505485   ⟹   XP_006505548
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39683,156,568 - 83,177,099 (+)NCBI
GRCm38683,179,586 - 83,200,117 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505486   ⟹   XP_006505549
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39683,156,568 - 83,177,099 (+)NCBI
GRCm38683,179,586 - 83,200,117 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505487   ⟹   XP_006505550
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39683,156,568 - 83,177,099 (+)NCBI
GRCm38683,179,586 - 83,200,117 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505488   ⟹   XP_006505551
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39683,156,576 - 83,177,099 (+)NCBI
GRCm38683,179,594 - 83,200,117 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505489   ⟹   XP_006505552
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39683,156,568 - 83,177,099 (+)NCBI
GRCm38683,179,586 - 83,200,117 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505490   ⟹   XP_006505553
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39683,142,720 - 83,177,099 (+)NCBI
GRCm38683,165,909 - 83,200,117 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505491   ⟹   XP_006505554
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39683,156,568 - 83,177,099 (+)NCBI
GRCm38683,179,586 - 83,200,117 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505492   ⟹   XP_006505555
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39683,142,720 - 83,177,099 (+)NCBI
GRCm38683,165,909 - 83,200,117 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505493   ⟹   XP_006505556
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39683,142,702 - 83,177,099 (+)NCBI
GRCm38683,165,909 - 83,200,117 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505494   ⟹   XP_006505557
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39683,142,904 - 83,177,099 (+)NCBI
GRCm38683,166,009 - 83,200,117 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505495   ⟹   XP_006505558
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39683,160,960 - 83,177,099 (+)NCBI
GRCm38683,183,976 - 83,200,117 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505496   ⟹   XP_006505559
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39683,156,568 - 83,174,293 (+)NCBI
GRCm38683,179,586 - 83,197,309 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017321379   ⟹   XP_017176868
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39683,156,568 - 83,177,099 (+)NCBI
GRCm38683,179,586 - 83,200,117 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030255135   ⟹   XP_030110995
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39683,142,904 - 83,177,099 (+)NCBI
GRCm38683,165,968 - 83,200,117 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030255136   ⟹   XP_030110996
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39683,142,720 - 83,177,099 (+)NCBI
GRCm38683,165,909 - 83,200,117 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030255137   ⟹   XP_030110997
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39683,142,944 - 83,177,099 (+)NCBI
GRCm38683,165,962 - 83,200,117 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036165800   ⟹   XP_036021693
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39683,148,322 - 83,177,099 (+)NCBI
RefSeq Acc Id: XM_036165802   ⟹   XP_036021695
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39683,142,720 - 83,177,099 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001185795 (Get FASTA)   NCBI Sequence Viewer  
  NP_001185796 (Get FASTA)   NCBI Sequence Viewer  
  NP_001334239 (Get FASTA)   NCBI Sequence Viewer  
  NP_031861 (Get FASTA)   NCBI Sequence Viewer  
  XP_006505548 (Get FASTA)   NCBI Sequence Viewer  
  XP_006505549 (Get FASTA)   NCBI Sequence Viewer  
  XP_006505550 (Get FASTA)   NCBI Sequence Viewer  
  XP_006505551 (Get FASTA)   NCBI Sequence Viewer  
  XP_006505552 (Get FASTA)   NCBI Sequence Viewer  
  XP_006505553 (Get FASTA)   NCBI Sequence Viewer  
  XP_006505554 (Get FASTA)   NCBI Sequence Viewer  
  XP_006505555 (Get FASTA)   NCBI Sequence Viewer  
  XP_006505556 (Get FASTA)   NCBI Sequence Viewer  
  XP_006505557 (Get FASTA)   NCBI Sequence Viewer  
  XP_006505558 (Get FASTA)   NCBI Sequence Viewer  
  XP_006505559 (Get FASTA)   NCBI Sequence Viewer  
  XP_017176868 (Get FASTA)   NCBI Sequence Viewer  
  XP_030110995 (Get FASTA)   NCBI Sequence Viewer  
  XP_030110996 (Get FASTA)   NCBI Sequence Viewer  
  XP_030110997 (Get FASTA)   NCBI Sequence Viewer  
  XP_036021693 (Get FASTA)   NCBI Sequence Viewer  
  XP_036021695 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB57773 (Get FASTA)   NCBI Sequence Viewer  
  AAH66061 (Get FASTA)   NCBI Sequence Viewer  
  BAE34241 (Get FASTA)   NCBI Sequence Viewer  
  BAE37079 (Get FASTA)   NCBI Sequence Viewer  
  BAE42418 (Get FASTA)   NCBI Sequence Viewer  
  BAE42912 (Get FASTA)   NCBI Sequence Viewer  
  EDK99073 (Get FASTA)   NCBI Sequence Viewer  
  O08788 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_031861   ⟸   NM_007835
- Peptide Label: isoform 1
- UniProtKB: O08788 (UniProtKB/Swiss-Prot),   Q3TRF1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001185795   ⟸   NM_001198866
- Peptide Label: isoform 2
- UniProtKB: E9Q3M3 (UniProtKB/TrEMBL),   Q6NZM3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001185796   ⟸   NM_001198867
- Peptide Label: isoform 3
- UniProtKB: E9Q586 (UniProtKB/TrEMBL),   Q6NZM3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006505553   ⟸   XM_006505490
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_006505555   ⟸   XM_006505492
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_006505556   ⟸   XM_006505493
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_006505557   ⟸   XM_006505494
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_006505548   ⟸   XM_006505485
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006505559   ⟸   XM_006505496
- Peptide Label: isoform X15
- Sequence:
RefSeq Acc Id: XP_006505549   ⟸   XM_006505486
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006505550   ⟸   XM_006505487
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006505551   ⟸   XM_006505488
- Peptide Label: isoform X4
- UniProtKB: E9Q3M3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006505552   ⟸   XM_006505489
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_006505554   ⟸   XM_006505491
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_006505558   ⟸   XM_006505495
- Peptide Label: isoform X14
- UniProtKB: D3YX34 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017176868   ⟸   XM_017321379
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_030110996   ⟸   XM_030255136
- Peptide Label: isoform X11
RefSeq Acc Id: XP_030110997   ⟸   XM_030255137
- Peptide Label: isoform X13
RefSeq Acc Id: XP_030110995   ⟸   XM_030255135
- Peptide Label: isoform X4
RefSeq Acc Id: NP_001334239   ⟸   NM_001347310
- Peptide Label: isoform 4
RefSeq Acc Id: ENSMUSP00000115838   ⟸   ENSMUST00000130212
RefSeq Acc Id: ENSMUSP00000109540   ⟸   ENSMUST00000113907
RefSeq Acc Id: ENSMUSP00000109552   ⟸   ENSMUST00000113919
RefSeq Acc Id: ENSMUSP00000109551   ⟸   ENSMUST00000113918
RefSeq Acc Id: ENSMUSP00000109546   ⟸   ENSMUST00000113913
RefSeq Acc Id: ENSMUSP00000076623   ⟸   ENSMUST00000077407
RefSeq Acc Id: ENSMUSP00000121538   ⟸   ENSMUST00000141680
RefSeq Acc Id: XP_036021695   ⟸   XM_036165802
- Peptide Label: isoform X7
RefSeq Acc Id: XP_036021693   ⟸   XM_036165800
- Peptide Label: isoform X4
Protein Domains
CAP-Gly   Dynactin

Promoters
RGD ID:6839170
Promoter ID:MM_KWN:46587
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Lung
Transcripts:ENSMUST00000113918,   OTTMUST00000060251,   OTTMUST00000060255
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36683,129,411 - 83,129,911 (+)MPROMDB
RGD ID:6839169
Promoter ID:MM_KWN:46588
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Lung
Transcripts:ENSMUST00000113907
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36683,135,851 - 83,136,351 (+)MPROMDB
RGD ID:6839171
Promoter ID:MM_KWN:46589
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000060256
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36683,137,701 - 83,138,952 (+)MPROMDB
RGD ID:6839172
Promoter ID:MM_KWN:46590
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000060257,   OTTMUST00000060258
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36683,143,501 - 83,144,001 (+)MPROMDB
RGD ID:6839174
Promoter ID:MM_KWN:46591
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Liver,   Lung
Transcripts:OTTMUST00000060259
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36683,144,151 - 83,145,272 (+)MPROMDB
RGD ID:6839173
Promoter ID:MM_KWN:46592
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Lung
Transcripts:OTTMUST00000060260
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36683,146,851 - 83,147,352 (+)MPROMDB
RGD ID:6890148
Promoter ID:EPDNEW_M8525
Type:initiation region
Name:Dctn1_1
Description:Mus musculus dynactin 1 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M8526  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38683,165,939 - 83,165,999EPDNEW
RGD ID:6890150
Promoter ID:EPDNEW_M8526
Type:initiation region
Name:Dctn1_2
Description:Mus musculus dynactin 1 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M8525  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38683,179,589 - 83,179,649EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:107745 AgrOrtholog
Ensembl Genes ENSMUSG00000031865 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000076623 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000109540 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000109546 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000109551 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000109552 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000115838 UniProtKB/TrEMBL
  ENSMUSP00000121538 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000077407 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000113907 UniProtKB/TrEMBL
  ENSMUST00000113913 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000113918 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000113919 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000130212 UniProtKB/TrEMBL
  ENSMUST00000141680 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.190 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro CAP-Gly_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CAP-Gly_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DCTN1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Dynactin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:13191 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:107745 ENTREZGENE
NCBI Gene 13191 ENTREZGENE
PANTHER PTHR18916:SF75 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CAP_GLY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Dynactin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Dctn1 PhenoGen
PROSITE CAP_GLY_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CAP_GLY_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART CAP_GLY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF74924 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniGene Mm.6919 ENTREZGENE
UniProt D3YX34 ENTREZGENE, UniProtKB/TrEMBL
  D3YYG9_MOUSE UniProtKB/TrEMBL
  D3Z2M9_MOUSE UniProtKB/TrEMBL
  DCTN1_MOUSE UniProtKB/Swiss-Prot
  E9Q3M3 ENTREZGENE, UniProtKB/TrEMBL
  E9Q586 ENTREZGENE, UniProtKB/TrEMBL
  O08788 ENTREZGENE
  Q3T9V8_MOUSE UniProtKB/TrEMBL
  Q3TB96_MOUSE UniProtKB/TrEMBL
  Q3TRF1 ENTREZGENE, UniProtKB/TrEMBL
  Q6NZM3 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary E9QLJ1 UniProtKB/Swiss-Prot
  Q3TZG7 UniProtKB/Swiss-Prot