Nfic (nuclear factor I/C) - Rat Genome Database
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Gene: Nfic (nuclear factor I/C) Mus musculus
Analyze
Symbol: Nfic
Name: nuclear factor I/C
RGD ID: 62308
Description: Predicted to have DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in negative regulation of transcription by RNA polymerase II; odontogenesis of dentin-containing tooth; and positive regulation of transcription by RNA polymerase II. Predicted to localize to fibrillar center and nucleoplasm. Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; retina nuclear layer; and skeletal musculature. Orthologous to human NFIC (nuclear factor I C); PARTICIPATES IN forkhead class A signaling pathway; INTERACTS WITH 1,2-dimethylhydrazine; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 1110019L22Rik; 1500041O16Rik; AA589446; AI746521; CCAAT-box-binding transcription factor; CTF; NF-I/C; NF1-; NF1-C; NFI-C; nuclear factor 1 C-type; nuclear factor 1-C2; nuclear factor 1/C; TGGCA-binding protein
Orthologs:
Homo sapiens (human) : NFIC (nuclear factor I C)  HGNC  Alliance
Rattus norvegicus (Norway rat) : Nfic (nuclear factor I/C)  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Nfic (nuclear factor I C)
Pan paniscus (bonobo/pygmy chimpanzee) : NFIC (nuclear factor I C)
Canis lupus familiaris (dog) : NFIC (nuclear factor I C)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Nfic (nuclear factor I C)
Sus scrofa (pig) : NFIC (nuclear factor I C)
Chlorocebus sabaeus (African green monkey) : NFIC (nuclear factor I C)
Heterocephalus glaber (naked mole-rat) : Nfic (nuclear factor I C)
more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391081,232,025 - 81,267,753 (-)NCBI
GRCm381081,396,191 - 81,431,919 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1081,396,186 - 81,455,635 (-)EnsemblGRCm38mm10GRCm38
MGSCv371080,858,936 - 80,889,918 (-)NCBIGRCm37mm9NCBIm37
MGSCv361080,799,320 - 80,830,302 (-)NCBImm8
Celera1082,417,224 - 82,449,357 (-)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,6-dinitrotoluene  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (EXP)
4-hydroxynon-2-enal  (EXP)
4-vinylcyclohexene dioxide  (EXP)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (ISO)
acetaldehyde  (EXP)
aflatoxin B1  (ISO)
amiodarone  (ISO)
ammonium chloride  (ISO)
amphetamine  (ISO)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (ISO)
bisphenol F  (EXP)
buta-1,3-diene  (EXP)
butanal  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (EXP)
cisplatin  (ISO)
clofibrate  (EXP)
crotonaldehyde  (ISO)
cyclosporin A  (ISO)
dicrotophos  (ISO)
dimethylarsinic acid  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
entinostat  (ISO)
ethanol  (EXP)
finasteride  (ISO)
flutamide  (ISO)
folic acid  (EXP)
furan  (ISO)
gentamycin  (ISO)
glycidol  (ISO)
isoprenaline  (EXP)
methapyrilene  (ISO)
methoxychlor  (EXP)
N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine  (EXP)
naphthalene  (EXP)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
phenobarbital  (EXP)
phenylmercury acetate  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
progesterone  (EXP)
SB 431542  (ISO)
selenium atom  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
tamoxifen  (EXP)
tert-butyl hydroperoxide  (EXP)
toluene  (ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)
vorinostat  (ISO)
zebularine  (ISO)
zinc atom  (EXP)
zinc(0)  (EXP)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:8889548   PMID:9052991   PMID:9056636   PMID:10085123   PMID:10087299   PMID:10349636   PMID:10486208   PMID:10762365   PMID:10922068   PMID:10959417   PMID:11042159   PMID:11076861  
PMID:12477932   PMID:12529411   PMID:12568726   PMID:12955085   PMID:14610273   PMID:15226823   PMID:15632069   PMID:15637146   PMID:16141072   PMID:16141073   PMID:16847321   PMID:17150988  
PMID:17186943   PMID:17553984   PMID:17760551   PMID:17967808   PMID:18287559   PMID:18799693   PMID:19153194   PMID:19386589   PMID:19706729   PMID:19752192   PMID:19888897   PMID:20059953  
PMID:20178747   PMID:20211142   PMID:20729551   PMID:21267068   PMID:21270437   PMID:21873635   PMID:22195013   PMID:22228435   PMID:24801901   PMID:24952961   PMID:25293436   PMID:25349111  
PMID:26293299   PMID:30091046   PMID:31138677   PMID:32098917   PMID:32759468  


Genomics

Comparative Map Data
Nfic
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391081,232,025 - 81,267,753 (-)NCBI
GRCm381081,396,191 - 81,431,919 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1081,396,186 - 81,455,635 (-)EnsemblGRCm38mm10GRCm38
MGSCv371080,858,936 - 80,889,918 (-)NCBIGRCm37mm9NCBIm37
MGSCv361080,799,320 - 80,830,302 (-)NCBImm8
Celera1082,417,224 - 82,449,357 (-)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
NFIC
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl193,314,403 - 3,469,217 (+)EnsemblGRCh38hg38GRCh38
GRCh38193,359,630 - 3,469,217 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37193,359,561 - 3,469,215 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36193,310,616 - 3,414,603 (+)NCBINCBI36hg18NCBI36
Build 34193,317,572 - 3,414,603NCBI
Celera193,296,412 - 3,400,416 (+)NCBI
Cytogenetic Map19p13.3NCBI
HuRef193,125,600 - 3,235,130 (+)NCBIHuRef
CHM1_1193,359,193 - 3,468,863 (+)NCBICHM1_1
Nfic
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0711,151,941 - 11,179,544 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl711,152,038 - 11,177,664 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0711,315,473 - 11,346,698 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.479,768,135 - 9,793,584 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.179,788,771 - 9,793,584 (+)NCBI
Celera76,478,006 - 6,497,550 (+)NCBICelera
Cytogenetic Map7q11NCBI
Nfic
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554955,095,450 - 5,139,442 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554955,095,219 - 5,139,561 (-)NCBIChiLan1.0ChiLan1.0
NFIC
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1193,340,343 - 3,446,810 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl193,294,319 - 3,440,417 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0192,387,226 - 2,495,475 (+)NCBIMhudiblu_PPA_v0panPan3
NFIC
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2055,914,855 - 56,014,907 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12055,920,614 - 55,980,307 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Nfic
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365881,928,661 - 1,963,525 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NFIC
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl275,193,304 - 75,297,380 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1275,193,113 - 75,262,490 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2275,687,011 - 75,711,260 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NFIC
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl63,135,480 - 3,227,601 (+)Ensembl
ChlSab1.163,128,553 - 3,232,485 (+)NCBI
Nfic
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248285,896,957 - 5,946,512 (-)NCBI

Position Markers
AW822021  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381081,396,302 - 81,396,577UniSTSGRCm38
MGSCv371080,859,047 - 80,859,322UniSTSGRCm37
Celera1082,417,335 - 82,417,610UniSTS
Cytogenetic Map10C1UniSTS
cM Map1043.0UniSTS
Whitehead/MRC_RH10925.12UniSTS
RH124965  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10C1UniSTS
cM Map1043.0UniSTS
AI746521  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381081,396,279 - 81,396,366UniSTSGRCm38
MGSCv371080,859,024 - 80,859,111UniSTSGRCm37
Celera1082,417,312 - 82,417,399UniSTS
Cytogenetic Map10C1UniSTS
cM Map1043.0UniSTS
Whitehead/MRC_RH10926.22UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357740Obsty3_mobesity 3 (mouse)Not determined108359714116355075Mouse
1301386Sysbp1_msystolic blood pressure 1 (mouse)Not determined101023252187565233Mouse
1357825Kidpq2_mkidney weight percentage QTL 2 (mouse)Not determined101282830784243920Mouse
1357656Hrtq3_mheart weight QTL 3 (mouse)Not determined101282830784243920Mouse
1357864Scfpq1_msubcutaneous fat pad percentage QTL 1 (mouse)Not determined101282830784243920Mouse
1357893Lvrq4_mliver weight QTL 4 (mouse)Not determined101282830784243920Mouse
4142380W3q11_mweight 3 weeks QTL 11 (mouse)Not determined1282830784243920Mouse
4141943W6q6_mweight 6 weeks QTL 6 (mouse)Not determined1282830784243920Mouse
4141956Egq7_mearly growth QTL 7 (mouse)Not determined1282830784243920Mouse
4142272W10q5_mweight 10 weeks QTL 5 (mouse)Not determined1282830784243920Mouse
39128215Lwq17_mliver weight QTL 17 (mouse)101282830784243920Mouse
1302067Scc9_mcolon tumor susceptibility 9 (mouse)Not determined1018383585125739363Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1019000000129800000Mouse
1558757Eae34_mexperimental allergic encephalomyelitis susceptibility 34 (mouse)Not determined1021532255114381325Mouse
26884403Cvht8_mcranial vault height 8, 16 week (mouse)102300000091200000Mouse
26884426Cvht1_mcranial vault height 1, 5 week (mouse)1024800000121200000Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039300000129800000Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039300000129800000Mouse
26884411Bzwq8_mbi-zygomatic width QTL 8, 10 week (mouse)1045000000116100000Mouse
26884407Bzwq14_mbi-zygomatic width QTL 14, 16 wee (mouse)1045600000120800000Mouse
4142313Angvq1_mangiogenesis by VEGF QTL 1 (mouse)Not determined4684430782655287Mouse
1302150Bbaa18_mB.burgdorferi-associated arthritis 18 (mouse)Not determined104950223383502378Mouse
4142169Pbwg16_mpostnatal body weight growth 16 (mouse)Not determined105001240884012633Mouse
1300597Skull14_mskull morphology 14 (mouse)Not determined105001240884012633Mouse
10045641Jckm3_mjuvenile cystic kidney modifier 3 (mouse)Not determined105001240884012633Mouse
1301966Lifespan2_mlife span 2 (mouse)Not determined105001244384012618Mouse
1357737Hpcr2_mhepatocarcinogen resistance 2 (mouse)Not determined105001244384012618Mouse
1300882Ath17_matherosclerosis 17 (mouse)Not determined105125566085255809Mouse
1301502Eae17_msusceptibility to experimental allergic encephalomyelitis 17 (mouse)Not determined105125566085255809Mouse
1301380Cia8_mcollagen induced arthritis QTL 8 (mouse)Not determined105161730482655287Mouse
14746991Manh68_mmandible shape 68 (mouse)105244466786444667Mouse
1301787Bsc1_mbrain size control 1 (mouse)Not determined105868113592681262Mouse
26884450Sklq15_mskull length QTL 15, 16 week (mouse)1059500000122500000Mouse
13208560Wght9_mweight 9 (mouse)1060000000121000000Mouse
26884424Zlq9_mzygomatic length QTL 9, 16 week (mouse)1064100000116100000Mouse
1302060El3_mepilepsy 3 (mouse)Not determined106565510499655287Mouse
1300533Aem3_manti-erythrocyte autoantibody modifier 3 (mouse)Not determined106565510499655287Mouse
1301737Insq9_minsulin QTL 9 (mouse)Not determined106565510499655287Mouse
1302035Lmb4_mlupus in MRL and B6 F2 cross (mouse)Not determined106701240892422811Mouse
26884447Sklq9_mskull length QTL 9, 10 week (mouse)1067500000111900000Mouse
26884430Zlq5_mzygomatic length QTL 5, 10 week (mouse)1068000000125000000Mouse
26884405Huml2_mhumerus length 2, 5 week (mouse)1069900000132500000Mouse
11039497Ltpr5a_mLeishmania tropica response 5a (mouse)1073671039107671185Mouse
4142107Obrq12_mobesity resistance QTL 12 (mouse)Not determined7415138482655287Mouse
11353832Pcholq4_mplasma cholesterol QTL 4 (mouse)1074151384125680038Mouse
11353843Gluq1_mblood glucose QTL 1 (mouse)1074151384125680038Mouse
1300975Fembrs3_mfemur breaking strength 3 (mouse)Not determined1075502706109502905Mouse
4142137Femwf3_mfemur work to failure 3 (mouse)Not determined75502706109502905Mouse
1357632Vtbt9_mvertebral trabecular bone trait 9 (mouse)Not determined1075502706109502905Mouse
11251717Siim1_mstress induced immobility 1 (mouse)1078545406112545406Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:5256
Count of miRNA genes:819
Interacting mature miRNAs:1119
Transcripts:ENSMUST00000020461, ENSMUST00000078185, ENSMUST00000105321, ENSMUST00000117966, ENSMUST00000140916, ENSMUST00000152670
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_008688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_026756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006513335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC155937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC159474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF111265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF358455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF358456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF358457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF358458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF358459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF358460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK003826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK005387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK087539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK155258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC019956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC055405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY226699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U57635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y07692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y07693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000020461   ⟹   ENSMUSP00000020461
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1081,399,138 - 81,427,173 (-)Ensembl
RefSeq Acc Id: ENSMUST00000078185   ⟹   ENSMUSP00000077317
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1081,399,138 - 81,427,114 (-)Ensembl
RefSeq Acc Id: ENSMUST00000105321   ⟹   ENSMUSP00000100958
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1081,396,186 - 81,427,187 (-)Ensembl
RefSeq Acc Id: ENSMUST00000117966   ⟹   ENSMUSP00000113046
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1081,400,953 - 81,431,005 (-)Ensembl
RefSeq Acc Id: ENSMUST00000140916   ⟹   ENSMUSP00000114469
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1081,400,769 - 81,407,641 (-)Ensembl
RefSeq Acc Id: ENSMUST00000152670
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1081,399,196 - 81,400,554 (-)Ensembl
RefSeq Acc Id: ENSMUST00000221817   ⟹   ENSMUSP00000152790
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1081,400,953 - 81,455,635 (-)Ensembl
RefSeq Acc Id: NM_008688   ⟹   NP_032714
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391081,232,025 - 81,263,007 (-)NCBI
GRCm381081,396,191 - 81,427,173 (-)NCBI
MGSCv371080,858,936 - 80,889,918 (-)RGD
Celera1082,417,224 - 82,449,357 (-)RGD
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_026756   ⟹   NP_081032
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391081,232,025 - 81,263,007 (-)NCBI
GRCm381081,396,191 - 81,427,173 (-)NCBI
MGSCv371080,858,936 - 80,889,918 (-)RGD
Celera1082,417,224 - 82,449,357 (-)RGD
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006513335   ⟹   XP_006513398
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391081,232,025 - 81,267,753 (-)NCBI
GRCm381081,396,191 - 81,431,919 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030244940   ⟹   XP_030100800
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391081,232,025 - 81,267,753 (-)NCBI
GRCm381081,396,191 - 81,431,919 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_081032   ⟸   NM_026756
- Peptide Label: isoform b
- UniProtKB: Q3UHA6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_032714   ⟸   NM_008688
- Peptide Label: isoform a
- UniProtKB: P70255 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006513398   ⟸   XM_006513335
- Peptide Label: isoform X1
- UniProtKB: P70255 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030100800   ⟸   XM_030244940
- Peptide Label: isoform X2
RefSeq Acc Id: ENSMUSP00000100958   ⟸   ENSMUST00000105321
RefSeq Acc Id: ENSMUSP00000020461   ⟸   ENSMUST00000020461
RefSeq Acc Id: ENSMUSP00000114469   ⟸   ENSMUST00000140916
RefSeq Acc Id: ENSMUSP00000152790   ⟸   ENSMUST00000221817
RefSeq Acc Id: ENSMUSP00000077317   ⟸   ENSMUST00000078185
RefSeq Acc Id: ENSMUSP00000113046   ⟸   ENSMUST00000117966
Protein Domains
CTF/NF-I

Promoters
RGD ID:6819663
Promoter ID:MM_KWN:4998
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   Brain,   ES_Cell,   Kidney,   Lung
Transcripts:OTTMUST00000075336
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361080,862,821 - 80,864,132 (-)MPROMDB
RGD ID:6819664
Promoter ID:MM_KWN:4999
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   Brain,   Kidney,   Liver,   Lung,   MEF_B6,   Spleen
Transcripts:OTTMUST00000075337
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361080,870,251 - 80,871,312 (-)MPROMDB
RGD ID:6819661
Promoter ID:MM_KWN:5001
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   Brain,   Kidney,   Liver,   Lung,   Spleen
Transcripts:OTTMUST00000075334,   OTTMUST00000075335,   UC007GHX.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361080,883,046 - 80,884,497 (-)MPROMDB
RGD ID:6819662
Promoter ID:MM_KWN:5002
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   BoneMarrow_0Hour,   Liver,   Lung,   MEF_B4
Transcripts:ENSMUST00000105319,   ENSMUST00000105320,   NM_008688,   OTTMUST00000075329,   OTTMUST00000075333
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361080,889,571 - 80,890,071 (-)MPROMDB
RGD ID:6819665
Promoter ID:MM_KWN:5003
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   Lung
Transcripts:UC007GIA.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361080,893,046 - 80,894,352 (-)MPROMDB
RGD ID:8672808
Promoter ID:EPDNEW_M14435
Type:multiple initiation site
Name:AK005387_1
Description:n/a
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381081,400,631 - 81,400,691EPDNEW
RGD ID:8672810
Promoter ID:EPDNEW_M14436
Type:initiation region
Name:Nfic_1
Description:Mus musculus nuclear factor I/C , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381081,427,157 - 81,427,217EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:109591 AgrOrtholog
Ensembl Genes ENSMUSG00000055053 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000020461 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000077317 UniProtKB/Swiss-Prot
  ENSMUSP00000100958 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000113046 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000114469 UniProtKB/TrEMBL
  ENSMUSP00000152790 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000020461 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000078185 UniProtKB/Swiss-Prot
  ENSMUST00000105321 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000117966 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000140916 UniProtKB/TrEMBL
  ENSMUST00000221817 UniProtKB/TrEMBL
InterPro CTF/NFI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CTF/NFI_DNA-bd-dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CTF/NFI_DNA-bd_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CTF/NFI_DNA-bd_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MAD_homology1_Dwarfin-type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:18029 UniProtKB/Swiss-Prot
MGD MGI:109591 ENTREZGENE
NCBI Gene 18029 ENTREZGENE
PANTHER PTHR11492 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CTF_NFI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MH1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NfI_DNAbd_pre-N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Nfic PhenoGen
PROSITE CTF_NFI_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CTF_NFI_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART DWA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniGene Mm.426936 ENTREZGENE
  Mm.453078 ENTREZGENE
UniProt A0A1Y7VK55_MOUSE UniProtKB/TrEMBL
  F6XYU7_MOUSE UniProtKB/TrEMBL
  NFIC_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3UHA6 ENTREZGENE, UniProtKB/TrEMBL
  Q9D188_MOUSE UniProtKB/TrEMBL
UniProt Secondary O09072 UniProtKB/Swiss-Prot
  P70256 UniProtKB/Swiss-Prot
  Q3U2I9 UniProtKB/Swiss-Prot
  Q99MA3 UniProtKB/Swiss-Prot
  Q99MA4 UniProtKB/Swiss-Prot
  Q99MA5 UniProtKB/Swiss-Prot
  Q99MA6 UniProtKB/Swiss-Prot
  Q99MA7 UniProtKB/Swiss-Prot
  Q99MA8 UniProtKB/Swiss-Prot
  Q9R1G3 UniProtKB/Swiss-Prot