Syt6 (synaptotagmin VI) - Rat Genome Database
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Gene: Syt6 (synaptotagmin VI) Mus musculus
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Symbol: Syt6
Name: synaptotagmin VI
RGD ID: 62304
Description: Exhibits calcium-dependent protein binding activity; phospholipid binding activity; and protein dimerization activity. Involved in acrosome reaction. Localizes to several cellular components, including cytosol; extrinsic component of membrane; and perinuclear endoplasmic reticulum. Is expressed in several structures, including alimentary system; genitourinary system; integumental system; nervous system; and sensory organ. Orthologous to human SYT6 (synaptotagmin 6); INTERACTS WITH 17beta-estradiol; clofibrate; ethanol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 3110037A08Rik; AW048930; synaptotagmin 6; synaptotagmin-6; sytVI
Orthologs:
Homo sapiens (human) : SYT6 (synaptotagmin 6)  HGNC  Alliance
Rattus norvegicus (Norway rat) : Syt6 (synaptotagmin 6)  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Syt6 (synaptotagmin 6)
Pan paniscus (bonobo/pygmy chimpanzee) : SYT6 (synaptotagmin 6)
Canis lupus familiaris (dog) : SYT6 (synaptotagmin 6)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Syt6 (synaptotagmin 6)
Sus scrofa (pig) : SYT6 (synaptotagmin 6)
Chlorocebus sabaeus (African green monkey) : SYT6 (synaptotagmin 6)
Heterocephalus glaber (naked mole-rat) : Syt6 (synaptotagmin 6)
more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393103,482,561 - 103,552,883 (+)NCBI
GRCm383103,575,245 - 103,645,567 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3103,575,231 - 103,645,569 (+)EnsemblGRCm38mm10GRCm38
MGSCv373103,379,204 - 103,439,102 (+)NCBIGRCm37mm9NCBIm37
MGSCv363103,704,342 - 103,764,239 (+)NCBImm8
Celera3105,781,488 - 105,842,192 (+)NCBICelera
Cytogenetic Map3F2.2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

Additional References at PubMed
PMID:8626542   PMID:8889548   PMID:10349636   PMID:10531344   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12860971   PMID:14681479   PMID:15774481   PMID:16141072   PMID:16141073  
PMID:16407767   PMID:16602821   PMID:17953485   PMID:18554416   PMID:19906978   PMID:20002670   PMID:21104742   PMID:21677750   PMID:21873635   PMID:24154525   PMID:30545844   PMID:30635555  
PMID:30868103   PMID:31818953   PMID:32325033  


Genomics

Comparative Map Data
Syt6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393103,482,561 - 103,552,883 (+)NCBI
GRCm383103,575,245 - 103,645,567 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3103,575,231 - 103,645,569 (+)EnsemblGRCm38mm10GRCm38
MGSCv373103,379,204 - 103,439,102 (+)NCBIGRCm37mm9NCBIm37
MGSCv363103,704,342 - 103,764,239 (+)NCBImm8
Celera3105,781,488 - 105,842,192 (+)NCBICelera
Cytogenetic Map3F2.2NCBI
SYT6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1114,089,291 - 114,153,919 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl1114,089,291 - 114,153,880 (-)EnsemblGRCh38hg38GRCh38
GRCh381114,089,292 - 114,153,869 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371114,631,914 - 114,696,472 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361114,433,437 - 114,497,995 (-)NCBINCBI36hg18NCBI36
Build 341114,346,428 - 114,408,514NCBI
Celera1112,861,141 - 112,925,712 (-)NCBI
Cytogenetic Map1p13.2NCBI
HuRef1112,489,973 - 112,554,564 (-)NCBIHuRef
CHM1_11114,746,727 - 114,811,584 (-)NCBICHM1_1
Syt6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.02206,064,181 - 206,119,034 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2206,064,179 - 206,127,907 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02225,492,367 - 225,547,221 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42198,807,340 - 198,862,227 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12198,770,093 - 198,824,981 (+)NCBI
Celera2183,565,789 - 183,620,107 (+)NCBICelera
Cytogenetic Map2q34NCBI
Syt6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543517,347,011 - 17,405,526 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543517,349,971 - 17,405,526 (-)NCBIChiLan1.0ChiLan1.0
SYT6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11123,453,698 - 123,514,804 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v0188,397,809 - 88,467,493 (+)NCBIMhudiblu_PPA_v0panPan3
SYT6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1751,864,774 - 51,924,676 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11751,859,564 - 51,923,044 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Syt6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049366902,435,573 - 2,497,332 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SYT6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4106,425,692 - 106,486,931 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14106,420,614 - 106,485,468 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24116,560,038 - 116,622,295 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SYT6
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl2019,512,540 - 19,563,038 (+)Ensembl
ChlSab1.12019,497,218 - 19,561,621 (+)NCBI
Syt6
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247729,753,485 - 9,810,815 (-)NCBI

Position Markers
Syt6  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map3F3UniSTS
cM Map3 UniSTS
RH142700  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm383103,602,284 - 103,602,464UniSTSGRCm38
MGSCv373103,406,207 - 103,406,387UniSTSGRCm37
Celera3105,808,626 - 105,808,806UniSTS
Cytogenetic Map3F3UniSTS
AW048930  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm383103,634,879 - 103,634,976UniSTSGRCm38
MGSCv373103,438,802 - 103,438,899UniSTSGRCm37
Celera3105,841,892 - 105,841,989UniSTS
Cytogenetic Map3F3UniSTS
Whitehead/MRC_RH31230.24UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33200000142700000Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316000000109800000Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316450000130370000Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328900000119100000Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330013439147599053Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337120713143647422Mouse
13208566Bmiq5_mbody mass index QTL 5 (mouse)341000000116000000Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352300000137500000Mouse
25314313Syncl1_msynaptonemal complex length 1 (mouse)368000000128600000Mouse
11251721Ewc3_methanol withdrawal and consumption 3 (mouse)369661247103661247Mouse
1301422Sle11_msystematic lupus erythematosus susceptibility 11 (mouse)Not determined370301597104301735Mouse
1300982Lmr11_mleishmaniasis resistance 11 (mouse)Not determined372232660106232787Mouse
11049572Lmr11c_mleishmaniasis resistance 11c (mouse)372232660106232787Mouse
1300595Tmevd2_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 2 (mouse)Not determined375555995109556242Mouse
1301392Eae3_msusceptibility to experimental allergic encephalomyelitis 3 (mouse)Not determined379641414113641521Mouse
1301947Pcfm3_mperiosteal circumference and femur length 3 (mouse)Not determined381177336115177481Mouse
1301904Iba2_minduction of brown adipocytes 2 (mouse)Not determined382239727116239868Mouse
11039507Ltpr3g_mLeishmania tropica response 3g (mouse)383556675117556821Mouse
11039508Ltpr3f_mLeishmania tropica response 3f (mouse)383556675117556821Mouse
11039509Ltpr3e_mLeishmania tropica response 3e (mouse)383556675117556821Mouse
11039510Ltpr3d_mLeishmania tropica response 3d (mouse)383556675117556821Mouse
11039511Ltpr3c_mLeishmania tropica response 3c (mouse)383556675117556821Mouse
11039512Ltpr3b_mLeishmania tropica response 3b (mouse)383556675117556821Mouse
11041900Lmr11a_mleishmaniasis resistance 11a (mouse)383556675117556821Mouse
1301272Cfsw1_mcystic fibrosis survival to weaning 1 (mouse)Not determined383975596117975728Mouse
4142099Cq3_mcholesterol QTL 3 (mouse)Not determined384981602118981751Mouse
14746984Manh54_mmandible shape 54 (mouse)385381836119381836Mouse
1357583Sle18_msystematic lupus erythematosus susceptibility 18 (mouse)Not determined387301597125522587Mouse
12738440Twq3_mtestis weight QTL 3 (mouse)387320699121320699Mouse
4142178Ctrq2_mC. trachomatis resistance QTL 2 (mouse)Not determined389232660137747247Mouse
10766455Sle22_msystematic lupus erythematosus susceptibility 22 (mouse)390469620124469756Mouse
14747001Mancz4_mmandible centroid size 4 (mouse)390470701124470701Mouse
1302052Etohcta4_methanol conditioned taste aversion 4 (mouse)Not determined391092789125101432Mouse
1301349Pgia26_mproteoglycan induced arthritis 26 (mouse)Not determined392344217126344334Mouse
27226732Tibmd3_mtibia midshaft diameter 3, 10 week (mouse)396700000148100000Mouse
10043955Wt10q4_mbody weight, 10 weeks, QTL 4 (mouse)Not determined398830392132830548Mouse
11533920Mvb3_mmodifier of vibrator 3 (mouse)398841635132841734Mouse
12792984Modn1_mmodifier of Dstn neovascularization 1 (mouse)398841635132841734Mouse
1302114Tbs1_mtuberculosis severity 1 (mouse)Not determined399130456133130601Mouse
1300752Ap6q_malcohol preference 6 QTL (mouse)Not determined3100465596147339967Mouse
26884419Bzwq6_mbi-zygomatic width QTL 6, 10 week (mouse)3100700000137500000Mouse
4141312Cia21_mcollagen induced arthritis 21 (mouse)Not determined3100747868103837463Mouse
8655600Cia5b_mcollagen induced arthritis QTL 5b (mouse)Not determined3100747868103837463Mouse
27226733Tibmd6_mtibia midshaft diameter 6, 16 week (mouse)3101400000150100000Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:5534
Count of miRNA genes:891
Interacting mature miRNAs:1310
Transcripts:ENSMUST00000090697, ENSMUST00000117221, ENSMUST00000118117, ENSMUST00000118563, ENSMUST00000121834, ENSMUST00000132325, ENSMUST00000136049, ENSMUST00000151985, ENSMUST00000183637
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001276676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001276677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001276679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001276680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001276681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_018800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006501704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006501705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006501706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006501707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006501708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003954360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003954361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003954362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004941361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_375546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_375547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB026803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB026809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB026810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC123057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK019424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK044551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK135051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC050760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC065065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU562289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ058838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU210935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000090697   ⟹   ENSMUSP00000088196
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl3103,575,281 - 103,635,179 (+)Ensembl
RefSeq Acc Id: ENSMUST00000117221   ⟹   ENSMUSP00000113373
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl3103,576,126 - 103,635,178 (+)Ensembl
RefSeq Acc Id: ENSMUST00000118117   ⟹   ENSMUSP00000112486
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl3103,576,142 - 103,627,556 (+)Ensembl
RefSeq Acc Id: ENSMUST00000118563   ⟹   ENSMUSP00000113287
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl3103,576,142 - 103,645,569 (+)Ensembl
RefSeq Acc Id: ENSMUST00000121834   ⟹   ENSMUSP00000112997
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl3103,575,231 - 103,630,946 (+)Ensembl
RefSeq Acc Id: ENSMUST00000132325   ⟹   ENSMUSP00000116324
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl3103,575,282 - 103,635,179 (+)Ensembl
RefSeq Acc Id: ENSMUST00000136049   ⟹   ENSMUSP00000118124
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl3103,575,300 - 103,632,768 (+)Ensembl
RefSeq Acc Id: ENSMUST00000151985   ⟹   ENSMUSP00000119688
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl3103,575,378 - 103,630,927 (+)Ensembl
RefSeq Acc Id: ENSMUST00000183637   ⟹   ENSMUSP00000138874
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl3103,576,081 - 103,587,240 (+)Ensembl
RefSeq Acc Id: ENSMUST00000239027   ⟹   ENSMUSP00000159100
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl3103,575,378 - 103,632,518 (+)Ensembl
RefSeq Acc Id: NM_001276676   ⟹   NP_001263605
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393103,482,561 - 103,542,495 (+)NCBI
GRCm383103,575,245 - 103,635,179 (+)NCBI
Celera3105,781,489 - 105,854,109 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001276677   ⟹   NP_001263606
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393103,482,561 - 103,538,285 (+)NCBI
GRCm383103,575,245 - 103,630,969 (+)NCBI
Celera3105,781,489 - 105,854,109 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001276679   ⟹   NP_001263608
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393103,482,598 - 103,538,285 (+)NCBI
GRCm383103,575,282 - 103,630,969 (+)NCBI
Celera3105,781,489 - 105,854,109 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001276680   ⟹   NP_001263609
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393103,483,442 - 103,552,883 (+)NCBI
GRCm383103,576,126 - 103,645,567 (+)NCBI
Celera3105,781,489 - 105,854,109 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001276681   ⟹   NP_001263610
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393103,483,442 - 103,542,495 (+)NCBI
GRCm383103,576,126 - 103,635,179 (+)NCBI
Celera3105,781,489 - 105,854,109 (+)NCBI
Sequence:
RefSeq Acc Id: NM_018800   ⟹   NP_061270
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393103,482,561 - 103,542,495 (+)NCBI
GRCm383103,575,245 - 103,635,179 (+)NCBI
MGSCv373103,379,204 - 103,439,102 (+)RGD
Celera3105,781,489 - 105,854,109 (+)NCBI
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006501704   ⟹   XP_006501767
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393103,482,613 - 103,542,494 (+)NCBI
GRCm383103,575,246 - 103,635,178 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006501705   ⟹   XP_006501768
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393103,482,694 - 103,542,494 (+)NCBI
GRCm383103,575,378 - 103,635,178 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006501706   ⟹   XP_006501769
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393103,483,346 - 103,542,494 (+)NCBI
GRCm383103,576,030 - 103,635,178 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006501707   ⟹   XP_006501770
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393103,482,922 - 103,542,494 (+)NCBI
GRCm383103,575,994 - 103,635,178 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006501708   ⟹   XP_006501771
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393103,483,387 - 103,542,494 (+)NCBI
GRCm383103,576,071 - 103,635,178 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030252690   ⟹   XP_030108550
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393103,483,400 - 103,542,494 (+)NCBI
GRCm383103,576,081 - 103,635,178 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036163164   ⟹   XP_036019057
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393103,486,688 - 103,542,494 (+)NCBI
RefSeq Acc Id: XM_036163165   ⟹   XP_036019058
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393103,482,564 - 103,542,494 (+)NCBI
RefSeq Acc Id: XR_003954360
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393103,483,402 - 103,542,494 (+)NCBI
GRCm383103,576,082 - 103,635,178 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003954361
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393103,483,308 - 103,542,494 (+)NCBI
GRCm383103,575,992 - 103,635,178 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003954362
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393103,482,927 - 103,542,494 (+)NCBI
GRCm383103,575,994 - 103,635,178 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004941361
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393103,486,688 - 103,542,494 (+)NCBI
RefSeq Acc Id: XR_375546
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393103,482,694 - 103,542,494 (+)NCBI
GRCm383103,575,378 - 103,635,178 (+)NCBI
Sequence:
RefSeq Acc Id: XR_375547
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393103,482,563 - 103,542,494 (+)NCBI
GRCm383103,575,249 - 103,635,178 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_061270   ⟸   NM_018800
- Peptide Label: isoform 1
- UniProtKB: Q9R0N8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001263605   ⟸   NM_001276676
- Peptide Label: isoform 2
- UniProtKB: Q05BE2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001263606   ⟸   NM_001276677
- Peptide Label: isoform 3
- UniProtKB: Q6P1H9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001263608   ⟸   NM_001276679
- Peptide Label: isoform 3
- UniProtKB: Q6P1H9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001263609   ⟸   NM_001276680
- Peptide Label: isoform 4
- UniProtKB: Q3UY13 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001263610   ⟸   NM_001276681
- Peptide Label: isoform 3
- UniProtKB: Q05BE2 (UniProtKB/TrEMBL),   Q6P1H9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006501768   ⟸   XM_006501705
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006501767   ⟸   XM_006501704
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006501769   ⟸   XM_006501706
- Peptide Label: isoform X3
- UniProtKB: Q05BE2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006501770   ⟸   XM_006501707
- Peptide Label: isoform X3
- UniProtKB: Q05BE2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006501771   ⟸   XM_006501708
- Peptide Label: isoform X3
- UniProtKB: Q05BE2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030108550   ⟸   XM_030252690
- Peptide Label: isoform X3
RefSeq Acc Id: ENSMUSP00000088196   ⟸   ENSMUST00000090697
RefSeq Acc Id: ENSMUSP00000138874   ⟸   ENSMUST00000183637
RefSeq Acc Id: ENSMUSP00000113287   ⟸   ENSMUST00000118563
RefSeq Acc Id: ENSMUSP00000112486   ⟸   ENSMUST00000118117
RefSeq Acc Id: ENSMUSP00000116324   ⟸   ENSMUST00000132325
RefSeq Acc Id: ENSMUSP00000119688   ⟸   ENSMUST00000151985
RefSeq Acc Id: ENSMUSP00000159100   ⟸   ENSMUST00000239027
RefSeq Acc Id: ENSMUSP00000113373   ⟸   ENSMUST00000117221
RefSeq Acc Id: ENSMUSP00000118124   ⟸   ENSMUST00000136049
RefSeq Acc Id: ENSMUSP00000112997   ⟸   ENSMUST00000121834
RefSeq Acc Id: XP_036019058   ⟸   XM_036163165
- Peptide Label: isoform X4
RefSeq Acc Id: XP_036019057   ⟸   XM_036163164
- Peptide Label: isoform X3
Protein Domains
C2

Promoters
RGD ID:6881864
Promoter ID:EPDNEW_M4383
Type:initiation region
Name:Syt6_2
Description:Mus musculus synaptotagmin VI , transcript variant 6, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M4384  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm383103,575,281 - 103,575,341EPDNEW
RGD ID:6881866
Promoter ID:EPDNEW_M4384
Type:single initiation site
Name:Syt6_1
Description:Mus musculus synaptotagmin VI , transcript variant 6, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M4383  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm383103,576,216 - 103,576,276EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1859544 AgrOrtholog
Ensembl Genes ENSMUSG00000027849 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000088196 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000112486 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000112997 UniProtKB/Swiss-Prot
  ENSMUSP00000113287 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000113373 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000116324 UniProtKB/TrEMBL
  ENSMUSP00000118124 UniProtKB/TrEMBL
  ENSMUSP00000119688 UniProtKB/TrEMBL
  ENSMUSP00000138874 UniProtKB/TrEMBL
  ENSMUSP00000159100 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000090697 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000117221 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000118117 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000118563 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000121834 UniProtKB/Swiss-Prot
  ENSMUST00000132325 UniProtKB/TrEMBL
  ENSMUST00000136049 UniProtKB/TrEMBL
  ENSMUST00000151985 UniProtKB/TrEMBL
  ENSMUST00000183637 UniProtKB/TrEMBL
  ENSMUST00000239027 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.150 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro C2_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Synaptotagmin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SYT6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:54524 UniProtKB/Swiss-Prot
MGD MGI:1859544 ENTREZGENE
NCBI Gene 54524 ENTREZGENE
PANTHER PTHR10024:SF45 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PF00168 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Syt6 PhenoGen
PRINTS C2DOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SYNAPTOTAGMN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE PS50004 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SM00239 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniGene Mm.488213 ENTREZGENE
  Mm.88818 ENTREZGENE
UniProt A0A5F8MPS8_MOUSE UniProtKB/TrEMBL
  D6RHQ5_MOUSE UniProtKB/TrEMBL
  D6RIM4_MOUSE UniProtKB/TrEMBL
  Q05BE2 ENTREZGENE, UniProtKB/TrEMBL
  Q3UY13 ENTREZGENE, UniProtKB/TrEMBL
  Q6P1H9 ENTREZGENE, UniProtKB/TrEMBL
  Q8C8S6_MOUSE UniProtKB/TrEMBL
  Q9R0N8 ENTREZGENE, UniProtKB/Swiss-Prot
  V9GWX4_MOUSE UniProtKB/TrEMBL
UniProt Secondary E9QJV2 UniProtKB/Swiss-Prot
  Q9QUK7 UniProtKB/Swiss-Prot