Cntn6 (contactin 6) - Rat Genome Database

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Gene: Cntn6 (contactin 6) Mus musculus
Analyze
Symbol: Cntn6
Name: contactin 6
RGD ID: 62300
MGI Page MGI
Description: Predicted to have cell-cell adhesion mediator activity. Involved in positive regulation of Notch signaling pathway. Localizes to anchored component of presynaptic membrane and parallel fiber to Purkinje cell synapse. Is expressed in brain; spinal cord; and tooth. Orthologous to human CNTN6 (contactin 6); PARTICIPATES IN Notch signaling pathway; INTERACTS WITH benzo[a]pyrene; crocidolite asbestos; ethanol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: contactin-6; mNB-3; NB-; NB-3; neural recognition molecule NB-3
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396104,469,566 - 104,840,367 (+)NCBIGRCm39mm39
GRCm39 Ensembl6104,469,751 - 104,840,367 (+)Ensembl
GRCm386104,492,662 - 104,863,406 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6104,492,790 - 104,863,406 (+)EnsemblGRCm38mm10GRCm38
MGSCv376104,443,038 - 104,813,400 (+)NCBIGRCm37mm9NCBIm37
MGSCv366104,458,817 - 104,829,179 (+)NCBImm8
Celera6106,329,247 - 106,700,735 (+)NCBICelera
Cytogenetic Map6E1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10717476   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:12884264   PMID:15082708   PMID:15489334   PMID:16141072   PMID:16141073  
PMID:16284245   PMID:16701205   PMID:18046458   PMID:19672956   PMID:20176085   PMID:21267068   PMID:21622556   PMID:21745462   PMID:21873635   PMID:21935948   PMID:21969550   PMID:24559674  
PMID:24952961   PMID:24997765   PMID:25074942   PMID:25826454   PMID:26939565   PMID:27192985   PMID:27539848   PMID:27571008   PMID:28018171   PMID:28558017   PMID:29369566   PMID:30106251  
PMID:30156464   PMID:31098770   PMID:31578377  


Genomics

Comparative Map Data
Cntn6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396104,469,566 - 104,840,367 (+)NCBIGRCm39mm39
GRCm39 Ensembl6104,469,751 - 104,840,367 (+)Ensembl
GRCm386104,492,662 - 104,863,406 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6104,492,790 - 104,863,406 (+)EnsemblGRCm38mm10GRCm38
MGSCv376104,443,038 - 104,813,400 (+)NCBIGRCm37mm9NCBIm37
MGSCv366104,458,817 - 104,829,179 (+)NCBImm8
Celera6106,329,247 - 106,700,735 (+)NCBICelera
Cytogenetic Map6E1NCBI
CNTN6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl31,092,658 - 1,404,217 (+)EnsemblGRCh38hg38GRCh38
GRCh383978,021 - 1,404,217 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3731,134,708 - 1,445,901 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3631,109,629 - 1,420,278 (+)NCBINCBI36hg18NCBI36
Build 3431,109,628 - 1,420,278NCBI
Celera31,075,093 - 1,385,666 (+)NCBI
Cytogenetic Map3p26.3NCBI
HuRef31,074,692 - 1,385,318 (+)NCBIHuRef
CHM1_131,084,171 - 1,395,326 (+)NCBICHM1_1
Cntn6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24137,354,886 - 137,751,712 (+)NCBI
Rnor_6.0 Ensembl4136,512,201 - 136,904,355 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.04136,512,201 - 136,904,355 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04200,983,505 - 201,373,876 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44140,078,007 - 140,450,348 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14140,322,847 - 140,695,189 (+)NCBI
Celera4126,104,412 - 126,491,956 (+)NCBICelera
Cytogenetic Map4q41NCBI
Cntn6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542111,797,071 - 12,111,490 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542111,797,270 - 12,111,353 (-)NCBIChiLan1.0ChiLan1.0
CNTN6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.131,133,190 - 1,442,037 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl31,133,190 - 1,442,622 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v031,021,854 - 1,339,952 (+)NCBIMhudiblu_PPA_v0panPan3
CNTN6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12015,903,412 - 16,175,131 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2015,903,591 - 16,175,319 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2015,863,581 - 16,135,157 (-)NCBI
ROS_Cfam_1.02015,927,123 - 16,198,432 (-)NCBI
UMICH_Zoey_3.12015,625,321 - 15,896,382 (-)NCBI
UNSW_CanFamBas_1.02015,960,722 - 16,232,142 (-)NCBI
UU_Cfam_GSD_1.02015,958,282 - 16,228,793 (-)NCBI
Cntn6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049428,153,000 - 8,438,320 (+)NCBI
SpeTri2.0NW_0049365771,108,502 - 1,393,706 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CNTN6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1357,719,847 - 58,014,975 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11357,754,233 - 58,014,830 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21363,983,503 - 64,013,215 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CNTN6
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12237,212,995 - 37,518,060 (+)NCBI
ChlSab1.1 Ensembl2237,343,770 - 37,517,626 (+)Ensembl
Cntn6
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477311,059,466 - 11,417,825 (+)NCBI

Position Markers
27.MHAa93g3.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386104,589,175 - 104,589,341UniSTSGRCm38
MGSCv376104,539,169 - 104,539,335UniSTSGRCm37
Celera6106,425,628 - 106,425,794UniSTS
Cytogenetic Map6E2UniSTS
Whitehead_YAC6 UniSTS
D6Mit36  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386104,503,360 - 104,503,555UniSTSGRCm38
MGSCv376104,453,354 - 104,453,549UniSTSGRCm37
Celera6106,339,647 - 106,339,842UniSTS
Cytogenetic Map6E2UniSTS
cM Map646.0UniSTS
Whitehead Genetic640.4UniSTS
Whitehead_YAC6 UniSTS
Cntn6  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6E2UniSTS
cM Map6 UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671575060105575178Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671981024105981170Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671981024105981170Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673500000134700000Mouse
1301320Ots1_movarian teratoma susceptibility 1 (mouse)Not determined675447583104503555Mouse
10043901Pfat5_mpredicted fat percentage 5 (mouse)Not determined675607306109607450Mouse
10412208Cypr4_mcytokine production 4 (mouse)Not determined675716503109716697Mouse
1357875Pfat2_mpredicted fat percentage 2 (mouse)Not determined676463949110464093Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678629504121115387Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683713869147052561Mouse
11251720Ewc4_methanol withdrawal and consumption 4 (mouse)684122513118122513Mouse
1301687Mnic2_mmacronutrient intake (mouse)Not determined686806805113544602Mouse
1301744Hdlq11_mHDL QTL 11 (mouse)Not determined687503360121503555Mouse
1301262Gasa3_mgastritis type A susceptibility locus 3 (mouse)Not determined689005405123005603Mouse
1301244Ichs_mimmediate cutaneous hypersensitivity QTL (mouse)Not determined690795610124795846Mouse
4141578Obrq1_mobesity resistance QTL 1 (mouse)Not determined92607306112004738Mouse
11353842Bmiq4_mbody mass index QTL 4 (mouse)692607306146429238Mouse
1301292Cfbw2_mcystic fibrosis body weight 2 (mouse)Not determined695004651129004738Mouse
1300704Cia3_mcollagen induced arthritis QTL 3 (mouse)Not determined696347325130347522Mouse
11040599Lmr4b_mleishmaniasis resistance 4b (mouse)696347325130347522Mouse
4141940W6q5_mweight 6 weeks QTL 5 (mouse)Not determined96655951146633626Mouse
4142416Egq11_mearly growth QTL 11 (mouse)Not determined96655951146633626Mouse
1357555Tesq2_mtestis weight QTL 2 (mouse)Not determined696655951146633626Mouse
10043923Bhr7_mbronchial hyperresponsiveness 7 (mouse)Not determined698242853132242977Mouse
1301518Bbaa5_mB.burgdorferi-associated arthritis 5 (mouse)Not determined698506837145935444Mouse
1301923Lith6_mlithogenic gene 6 (mouse)Not determined698717516132717715Mouse
1301915Chab3_mcholesterol absorption 3 (mouse)Not determined698931748132940036Mouse
1302131Bmd8_mbone mineral density 8 (mouse)Not determined699155128133155267Mouse
1300887Pabr1_mplasma apolipoprotein B (human) regulator 1 (mouse)Not determined6103777444136423692Mouse
1300958Tmevd1_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 1 (mouse)Not determined6104503360106005603Mouse
12910776Hcga4b_mhome cage activity 4b (mouse)6104503360110960065Mouse
1301509Sluc3_msusceptibility to lung cancer 3 (mouse)Not determined6104503360127042975Mouse
1357806Aaj3_manxiety in A/J 3 (mouse)Not determined6104503360136423692Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:316
Count of miRNA genes:156
Interacting mature miRNAs:168
Transcripts:ENSMUST00000089215, ENSMUST00000161070, ENSMUST00000161413, ENSMUST00000161446, ENSMUST00000162872
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_017383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006506381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006506382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006506383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006506384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011241409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017321678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017321679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036166284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036166285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036166286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036166287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036166288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036166289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036166290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036166291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036166292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003956233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004942984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004942985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB032602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB032603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC116110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC117728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC153023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC153990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK052972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK140013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC076594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000089215   ⟹   ENSMUSP00000086623
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6104,492,922 - 104,863,406 (+)Ensembl
RefSeq Acc Id: ENSMUST00000161070   ⟹   ENSMUSP00000124714
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6104,492,811 - 104,863,248 (+)Ensembl
RefSeq Acc Id: ENSMUST00000161413
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6104,493,054 - 104,571,662 (+)Ensembl
RefSeq Acc Id: ENSMUST00000161446   ⟹   ENSMUSP00000124531
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6104,492,790 - 104,642,949 (+)Ensembl
RefSeq Acc Id: ENSMUST00000162872   ⟹   ENSMUSP00000124025
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6104,493,248 - 104,863,401 (+)Ensembl
RefSeq Acc Id: NM_017383   ⟹   NP_059079
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396104,470,005 - 104,840,367 (+)NCBI
GRCm386104,493,044 - 104,863,406 (+)NCBI
MGSCv376104,443,038 - 104,813,400 (+)RGD
Celera6106,329,247 - 106,700,735 (+)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006506381   ⟹   XP_006506444
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396104,524,543 - 104,840,367 (+)NCBI
GRCm386104,547,560 - 104,863,406 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006506382   ⟹   XP_006506445
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396104,469,623 - 104,840,367 (+)NCBI
GRCm386104,492,733 - 104,863,406 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006506383   ⟹   XP_006506446
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396104,469,657 - 104,840,367 (+)NCBI
GRCm386104,492,733 - 104,863,406 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006506384   ⟹   XP_006506447
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396104,469,632 - 104,840,367 (+)NCBI
GRCm386104,492,671 - 104,863,406 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011241409   ⟹   XP_011239711
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396104,469,566 - 104,840,367 (+)NCBI
GRCm386104,492,662 - 104,863,406 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017321678   ⟹   XP_017177167
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396104,469,657 - 104,840,367 (+)NCBI
GRCm386104,492,733 - 104,863,406 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017321679   ⟹   XP_017177168
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396104,469,671 - 104,840,367 (+)NCBI
GRCm386104,493,259 - 104,863,406 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036166284   ⟹   XP_036022177
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396104,470,222 - 104,840,367 (+)NCBI
RefSeq Acc Id: XM_036166285   ⟹   XP_036022178
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396104,469,671 - 104,840,367 (+)NCBI
RefSeq Acc Id: XM_036166286   ⟹   XP_036022179
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396104,524,543 - 104,840,367 (+)NCBI
RefSeq Acc Id: XM_036166287   ⟹   XP_036022180
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396104,469,669 - 104,840,367 (+)NCBI
RefSeq Acc Id: XM_036166288   ⟹   XP_036022181
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396104,469,669 - 104,840,367 (+)NCBI
RefSeq Acc Id: XM_036166289   ⟹   XP_036022182
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396104,470,237 - 104,840,367 (+)NCBI
RefSeq Acc Id: XM_036166290   ⟹   XP_036022183
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396104,524,539 - 104,840,367 (+)NCBI
RefSeq Acc Id: XM_036166291   ⟹   XP_036022184
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396104,469,664 - 104,840,367 (+)NCBI
RefSeq Acc Id: XM_036166292   ⟹   XP_036022185
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396104,469,632 - 104,840,367 (+)NCBI
RefSeq Acc Id: XR_003956233
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396104,469,566 - 104,840,367 (+)NCBI
GRCm386104,492,662 - 104,863,406 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004942984
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396104,524,515 - 104,840,367 (+)NCBI
RefSeq Acc Id: XR_004942985
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396104,469,632 - 104,840,367 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_059079   ⟸   NM_017383
- Peptide Label: precursor
- UniProtKB: Q9JMB8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006506447   ⟸   XM_006506384
- Peptide Label: isoform X2
- UniProtKB: Q9JMB8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006506445   ⟸   XM_006506382
- Peptide Label: isoform X1
- UniProtKB: Q9JMB8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006506446   ⟸   XM_006506383
- Peptide Label: isoform X1
- UniProtKB: Q9JMB8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006506444   ⟸   XM_006506381
- Peptide Label: isoform X1
- UniProtKB: Q9JMB8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011239711   ⟸   XM_011241409
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017177167   ⟸   XM_017321678
- Peptide Label: isoform X1
- UniProtKB: Q9JMB8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017177168   ⟸   XM_017321679
- Peptide Label: isoform X1
- UniProtKB: Q9JMB8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000086623   ⟸   ENSMUST00000089215
RefSeq Acc Id: ENSMUSP00000124025   ⟸   ENSMUST00000162872
RefSeq Acc Id: ENSMUSP00000124531   ⟸   ENSMUST00000161446
RefSeq Acc Id: ENSMUSP00000124714   ⟸   ENSMUST00000161070
RefSeq Acc Id: XP_036022185   ⟸   XM_036166292
- Peptide Label: isoform X4
RefSeq Acc Id: XP_036022184   ⟸   XM_036166291
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036022180   ⟸   XM_036166287
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036022181   ⟸   XM_036166288
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036022178   ⟸   XM_036166285
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036022177   ⟸   XM_036166284
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036022182   ⟸   XM_036166289
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036022183   ⟸   XM_036166290
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036022179   ⟸   XM_036166286
- Peptide Label: isoform X1
Promoters
RGD ID:6890560
Promoter ID:EPDNEW_M8731
Type:initiation region
Name:Cntn6_1
Description:Mus musculus contactin 6 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm386104,493,065 - 104,493,125EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1858223 AgrOrtholog
Ensembl Genes ENSMUSG00000030092 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000086623 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000124025 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000124531 UniProtKB/TrEMBL
  ENSMUSP00000124714 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000089215 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000161070 UniProtKB/TrEMBL
  ENSMUST00000161446 UniProtKB/TrEMBL
  ENSMUST00000162872 UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro FN3_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FN3_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_I-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_sub UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:53870 UniProtKB/Swiss-Prot
MGD MGI:1858223 ENTREZGENE
NCBI Gene 53870 ENTREZGENE
Pfam fn3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  I-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cntn6 PhenoGen
PROSITE FN3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IG_LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART FN3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IGc2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00409 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF49265 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt CNTN6_MOUSE UniProtKB/Swiss-Prot
  E0CXE3_MOUSE UniProtKB/TrEMBL
  E0CY26_MOUSE UniProtKB/TrEMBL
  Q9JMB8 ENTREZGENE
UniProt Secondary Q8C6X1 UniProtKB/Swiss-Prot