Crybb3 (crystallin, beta B3) - Rat Genome Database

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Gene: Crybb3 (crystallin, beta B3) Mus musculus
Analyze
Symbol: Crybb3
Name: crystallin, beta B3
RGD ID: 62272
MGI Page MGI
Description: Predicted to be a structural constituent of eye lens. Predicted to be involved in lens development in camera-type eye and visual perception. Is expressed in eye; gut; and male reproductive gland or organ. Human ortholog(s) of this gene implicated in cataract 22 multiple types. Orthologous to human CRYBB3 (crystallin beta B3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AI852419; beta-B3 crystallin; beta-crystallin B3
RGD Orthologs
Human
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395113,223,705 - 113,230,102 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5113,223,705 - 113,229,450 (-)EnsemblGRCm39 Ensembl
GRCm385113,075,839 - 113,082,236 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5113,075,839 - 113,081,584 (-)EnsemblGRCm38mm10GRCm38
MGSCv375113,504,859 - 113,510,604 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365113,316,142 - 113,320,953 (-)NCBIMGSCv36mm8
Celera5110,195,719 - 110,201,458 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map555.38NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7789995   PMID:8575764   PMID:8889548   PMID:8954727   PMID:9693140   PMID:10349636   PMID:10595510   PMID:10603348   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11309658  
PMID:11381063   PMID:11714668   PMID:12466851   PMID:12477932   PMID:15489334   PMID:15593327   PMID:16141072   PMID:16141073   PMID:21436445   PMID:21677750   PMID:21873635   PMID:21998302  
PMID:24194600   PMID:27326458   PMID:27626380   PMID:28552735   PMID:30646012   PMID:30683901   PMID:36293380  


Genomics

Comparative Map Data
Crybb3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395113,223,705 - 113,230,102 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5113,223,705 - 113,229,450 (-)EnsemblGRCm39 Ensembl
GRCm385113,075,839 - 113,082,236 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5113,075,839 - 113,081,584 (-)EnsemblGRCm38mm10GRCm38
MGSCv375113,504,859 - 113,510,604 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365113,316,142 - 113,320,953 (-)NCBIMGSCv36mm8
Celera5110,195,719 - 110,201,458 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map555.38NCBI
CRYBB3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382225,199,858 - 25,207,359 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2225,199,858 - 25,207,359 (+)EnsemblGRCh38hg38GRCh38
GRCh372225,595,825 - 25,603,326 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362223,925,825 - 23,933,324 (+)NCBINCBI36Build 36hg18NCBI36
Build 342223,920,378 - 23,927,878NCBI
Celera229,400,151 - 9,407,652 (+)NCBICelera
Cytogenetic Map22q11.23ENTREZGENE
HuRef228,543,498 - 8,551,008 (+)NCBIHuRef
CHM1_12225,554,439 - 25,561,949 (+)NCBICHM1_1
T2T-CHM13v2.02225,661,043 - 25,668,545 (+)NCBIT2T-CHM13v2.0
Crybb3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81249,217,554 - 49,222,565 (+)NCBIGRCr8
mRatBN7.21243,557,103 - 43,562,120 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1243,557,103 - 43,562,120 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1244,723,508 - 44,728,481 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01245,336,319 - 45,341,332 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01244,396,847 - 44,401,860 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01249,564,991 - 49,571,008 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1249,565,992 - 49,571,006 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01251,337,630 - 51,343,640 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1245,152,881 - 45,157,892 (+)NCBICelera
Cytogenetic Map12q16NCBI
Crybb3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545545,435 - 51,234 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545545,499 - 50,694 (-)NCBIChiLan1.0ChiLan1.0
CRYBB3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12619,276,101 - 19,291,412 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2619,284,927 - 19,291,421 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2619,141,787 - 19,157,078 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02619,641,363 - 19,656,690 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2619,650,217 - 19,656,578 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12619,346,681 - 19,361,954 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02619,612,455 - 19,627,728 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02619,678,184 - 19,697,071 (+)NCBIUU_Cfam_GSD_1.0
Crybb3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118115,565,045 - 115,571,143 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936657299,468 - 305,695 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936657299,598 - 305,662 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CRYBB3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1443,193,060 - 43,199,626 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11443,191,007 - 43,199,631 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21445,901,197 - 45,909,742 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CRYBB3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1198,298,700 - 8,306,669 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl198,300,683 - 8,306,522 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045118,500,930 - 118,508,329 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Crybb3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247471,888,103 - 1,893,334 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247471,883,074 - 1,894,158 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Crybb3
267 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2361
Count of miRNA genes:606
Interacting mature miRNAs:718
Transcripts:ENSMUST00000076069, ENSMUST00000117143, ENSMUST00000118226, ENSMUST00000119627, ENSMUST00000120506, ENSMUST00000131708, ENSMUST00000134039, ENSMUST00000136352, ENSMUST00000140352, ENSMUST00000153382, ENSMUST00000155042
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
4142064Tmc1m4_mTmc1 modifier 4 (mouse)Not determined554500177127001072Mouse
26884395Humsd2_mhumerus midshaft diameter 2, 10 week (mouse)570057343132528839Mouse
27226719Tibw6_mtibia width 6, proximal, 16 week (mouse)572857343139985755Mouse
25314315Mlh1fc4_mMLH1 foci count 4 (mouse)574460661132528839Mouse
13506928Recrq8_mrecombination rate in male meiosis QTL 8 (mouse)574460661132528839Mouse
1357431Cia27_mcollagen induced arthritis 27 (mouse)Not determined575315348120018629Mouse
10401246Bglu13_mblood glucose level 13 (mouse)Not determined579539640113539786Mouse
10755524Mono1_mmonocyte differential 1 (mouse)580849259114849259Mouse
1301419Cypr3_mcytokine production 3 (mouse)Not determined581019649115019803Mouse
10401245Bglu18_mblood glucose level 18 (mouse)Not determined582838468116838597Mouse
13464242Ahl17_mage related hearing loss, early onset 17 (mouse)582838468116838597Mouse
10043958Chldq12_mcholesterol and HDL QTL 12 (mouse)Not determined587386871121387065Mouse
1301126Bwem1_mbody weight day 30 males 1 (mouse)Not determined587386871121387065Mouse
13464241Ahl18_mage related hearing loss, early onset 18 (mouse)587386871121387065Mouse
1300801Drb2_mdopamine receptor binding 2 (mouse)Not determined587386871121387065Mouse
1301399Cpfd3_mcerebellum pattern fissures (mouse)Not determined587386871121387065Mouse
1357725Eae39_mexperimental allergic encephalomyelitis 39 (mouse)Not determined589418876118864028Mouse
1300968Skts4_mskin tumor susceptibility 4 (mouse)Not determined589418876124238239Mouse
1301362Prnr1_mprion resistance 1 (mouse)Not determined589418876146787935Mouse
11049562Lmr24f_mleishmaniasis resistance 24f (mouse)590320962124321041Mouse
1301457Cfsw2_mcystic fibrosis survival to weaning 2 (mouse)Not determined590561006124561151Mouse
1300993Hycdc_mhypercapnic duty cycle (mouse)Not determined590561006124561151Mouse
9587780Afw16_mabdominal fat weight QTL 16 (mouse)Not determined592830166126830285Mouse
1301974Chab7_mcholesterol absorption 7 (mouse)Not determined595233214129233330Mouse
1357644Egrd1_mearly growth rate, direct effect 1 (mouse)Not determined595434580129434786Mouse
10402486Dipa1_mdrug induced psychomotor activation 1 (mouse)Not determined595465549129465722Mouse
13464244Ahl19_mage related hearing loss, early onset 19 (mouse)595465549129465722Mouse
1558774Lith17_mlithogenic gene 17 (mouse)Not determined595465549129465722Mouse
1300940Actd3_mactivity-distance traveled 3 (mouse)Not determined596320385130320533Mouse
1300659Pcd8ts1_mp-glycoprotein positive CD8 T cell subset 1 (mouse)Not determined597021753131021986Mouse
1301858Smdq1_msegregation of mitochondrial DNA QTL 1 (mouse)Not determined597021753131021986Mouse
10045978Tir10_mtrypanosome infection response 10 (mouse)Not determined598019649114021986Mouse
1301042Elmaz1_melevated maze behavior 1 (mouse)Not determined598019649116876624Mouse
4141519Hmtb5_mhemostasis and thrombosis bleeding time 5 (mouse)Not determined99949422126882944Mouse
12904945Tammq2_mtibialis anterior muscle mass QTL 2 (mouse)5100665965134665965Mouse
12904959Smmq1_msoleus muscle mass QTL 1 (mouse)5100665965134665965Mouse
12859290Criq2_mCitrobacter rodentium infection QTL 2 (mouse)5101332579135332579Mouse
1301624Aevm2_mautoimmune extremity vasculitis in MRL mice 2 (mouse)Not determined5101863832135864028Mouse
14746986Manh58_mmandible shape 58 (mouse)5102446283136446283Mouse
11532736Sluc33b_msusceptibility to lung cancer 33b (mouse)5102945037136945196Mouse
25314310Syncl4_msynaptonemal complex length 4 (mouse)5103047866115538059Mouse
25314317Sccor3_msynaptonemal complex length to mean MLH1 count ratio 3 (mouse)5104347866114738061Mouse
11528550Sluc33_msusceptibility to lung cancer 33 (mouse)5104386871120711986Mouse
1357886Diht_mdopamine-induced hypothermia (mouse)Not determined5104498738115101540Mouse
10412202Bbaa26_mB.burgdorferi-associated arthritis 26 (mouse)Not determined5104583688138555455Mouse
10412239Alpq7_malcohol preference QTL 7 (mouse)Not determined5104705939138705939Mouse
10043890Trigq4_mtriglyceride QTL 4 (mouse)Not determined5107906299141906412Mouse
4142473Chlq11_mcirculating hormone level QTL 11 (mouse)Not determined5107906299141906412Mouse
13464243Ahl20_mage related hearing loss, early onset 20 (mouse)5107906299141906412Mouse
4141139Hmtb4_mhemostasis and thrombosis rebleeding time 4 (mouse)Not determined108762509126882944Mouse
10412197Bbaa25_mB.burgdorferi-associated arthritis 25 (mouse)Not determined5109167240143167381Mouse
13464251Ahl21_mage related hearing loss, early onset 21 (mouse)5109167240143167381Mouse
1301543Hypch_mhypercholesterolemia (mouse)Not determined5109238624139118905Mouse
1300913Bwefm_mbody weight females and males day 10 (mouse)Not determined5109439348143439459Mouse
4141652Mrdq2_mmodifier of retinal degeneration QTL 2 (mouse)Not determined110253106118093673Mouse

Markers in Region
BB541033  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385113,075,866 - 113,076,012UniSTSGRCm38
MGSCv375113,504,886 - 113,505,032UniSTSGRCm37
Celera5110,195,746 - 110,195,892UniSTS
Cytogenetic Map5FUniSTS
cM Map560.0UniSTS
Whitehead/MRC_RH51383.85UniSTS
Crybb3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map5FUniSTS
cM Map560.0UniSTS
AI852419  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385113,077,540 - 113,077,626UniSTSGRCm38
MGSCv375113,506,560 - 113,506,646UniSTSGRCm37
Celera5110,197,418 - 110,197,504UniSTS
Cytogenetic Map5FUniSTS
cM Map560.0UniSTS
Whitehead/MRC_RH51362.85UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001159650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001359004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001359005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001359006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001359007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001359008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_021352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011249404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004942434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC162528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ272229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK053552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC031442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC058522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF739665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ046471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN539097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CO046139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CO428323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CO428392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CO428393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000076069   ⟹   ENSMUSP00000075440
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5113,223,705 - 113,228,533 (-)Ensembl
GRCm38.p6 Ensembl5113,075,839 - 113,080,667 (-)Ensembl
RefSeq Acc Id: ENSMUST00000117143   ⟹   ENSMUSP00000113347
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5113,223,713 - 113,229,449 (-)Ensembl
GRCm38.p6 Ensembl5113,075,847 - 113,081,583 (-)Ensembl
RefSeq Acc Id: ENSMUST00000118226   ⟹   ENSMUSP00000112618
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5113,223,705 - 113,228,976 (-)Ensembl
GRCm38.p6 Ensembl5113,075,839 - 113,081,110 (-)Ensembl
RefSeq Acc Id: ENSMUST00000119627   ⟹   ENSMUSP00000113572
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5113,223,705 - 113,229,450 (-)Ensembl
GRCm38.p6 Ensembl5113,075,839 - 113,081,584 (-)Ensembl
RefSeq Acc Id: ENSMUST00000120506   ⟹   ENSMUSP00000112718
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5113,223,709 - 113,228,976 (-)Ensembl
GRCm38.p6 Ensembl5113,075,843 - 113,081,110 (-)Ensembl
RefSeq Acc Id: ENSMUST00000131708   ⟹   ENSMUSP00000115758
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5113,226,338 - 113,229,445 (-)Ensembl
GRCm38.p6 Ensembl5113,078,472 - 113,081,579 (-)Ensembl
RefSeq Acc Id: ENSMUST00000134039
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5113,226,404 - 113,229,446 (-)Ensembl
GRCm38.p6 Ensembl5113,078,538 - 113,081,580 (-)Ensembl
RefSeq Acc Id: ENSMUST00000136352   ⟹   ENSMUSP00000121559
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5113,227,623 - 113,228,925 (-)Ensembl
GRCm38.p6 Ensembl5113,079,757 - 113,081,059 (-)Ensembl
RefSeq Acc Id: ENSMUST00000140352   ⟹   ENSMUSP00000121929
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5113,226,255 - 113,228,519 (-)Ensembl
GRCm38.p6 Ensembl5113,078,389 - 113,080,653 (-)Ensembl
RefSeq Acc Id: ENSMUST00000153382
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5113,225,155 - 113,228,532 (-)Ensembl
GRCm38.p6 Ensembl5113,077,289 - 113,080,666 (-)Ensembl
RefSeq Acc Id: ENSMUST00000155042
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5113,224,890 - 113,228,257 (-)Ensembl
GRCm38.p6 Ensembl5113,077,024 - 113,080,391 (-)Ensembl
RefSeq Acc Id: NM_001159650   ⟹   NP_001153122
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395113,223,705 - 113,229,450 (-)NCBI
GRCm385113,075,839 - 113,081,584 (-)NCBI
MGSCv375113,504,859 - 113,510,604 (-)RGD
Celera5110,195,719 - 110,201,458 (-)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001359004   ⟹   NP_001345933
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395113,223,705 - 113,229,450 (-)NCBI
GRCm385113,075,839 - 113,081,584 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001359005   ⟹   NP_001345934
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395113,223,705 - 113,229,450 (-)NCBI
GRCm385113,075,839 - 113,081,584 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001359006   ⟹   NP_001345935
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395113,223,705 - 113,229,450 (-)NCBI
GRCm385113,075,839 - 113,081,584 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001359007   ⟹   NP_001345936
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395113,223,705 - 113,229,450 (-)NCBI
GRCm385113,075,839 - 113,081,584 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001359008   ⟹   NP_001345937
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395113,223,705 - 113,229,450 (-)NCBI
GRCm385113,075,839 - 113,081,584 (-)NCBI
Sequence:
RefSeq Acc Id: NM_021352   ⟹   NP_067327
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395113,223,705 - 113,229,450 (-)NCBI
GRCm385113,075,839 - 113,081,584 (-)NCBI
MGSCv375113,504,859 - 113,510,604 (-)RGD
Celera5110,195,719 - 110,201,458 (-)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011249404   ⟹   XP_011247706
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395113,223,705 - 113,227,857 (-)NCBI
GRCm385113,075,839 - 113,079,991 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030254104   ⟹   XP_030109964
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395113,223,705 - 113,230,102 (-)NCBI
GRCm385113,075,839 - 113,082,236 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004942434
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395113,223,873 - 113,228,283 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_067327   ⟸   NM_021352
- UniProtKB: Q9JJU9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001153122   ⟸   NM_001159650
- UniProtKB: Q9JJU9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011247706   ⟸   XM_011249404
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_030109964   ⟸   XM_030254104
- Peptide Label: isoform X2
- UniProtKB: Q9JJU9 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001345935   ⟸   NM_001359006
- UniProtKB: Q9JJU9 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001345937   ⟸   NM_001359008
- UniProtKB: Q9JJU9 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001345934   ⟸   NM_001359005
- UniProtKB: Q9JJU9 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001345936   ⟸   NM_001359007
- UniProtKB: Q9JJU9 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001345933   ⟸   NM_001359004
- UniProtKB: Q9JJU9 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSMUSP00000113572   ⟸   ENSMUST00000119627
RefSeq Acc Id: ENSMUSP00000112618   ⟸   ENSMUST00000118226
RefSeq Acc Id: ENSMUSP00000115758   ⟸   ENSMUST00000131708
RefSeq Acc Id: ENSMUSP00000075440   ⟸   ENSMUST00000076069
RefSeq Acc Id: ENSMUSP00000112718   ⟸   ENSMUST00000120506
RefSeq Acc Id: ENSMUSP00000121929   ⟸   ENSMUST00000140352
RefSeq Acc Id: ENSMUSP00000113347   ⟸   ENSMUST00000117143
RefSeq Acc Id: ENSMUSP00000121559   ⟸   ENSMUST00000136352
Protein Domains
Beta/gamma crystallin 'Greek key'

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9JJU9-F1-model_v2 AlphaFold Q9JJU9 1-211 view protein structure

Promoters
RGD ID:6887620
Promoter ID:EPDNEW_M7261
Type:multiple initiation site
Name:Crybb3_1
Description:Mus musculus crystallin, beta B3 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm385113,081,584 - 113,081,644EPDNEW
RGD ID:6837308
Promoter ID:MM_KWN:43454
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Lung,   MEF_B6
Transcripts:ENSMUST00000118226,   ENSMUST00000119627,   ENSMUST00000120506,   NM_001159650,   OTTMUST00000066350,   OTTMUST00000066352,   OTTMUST00000066353,   OTTMUST00000066356,   OTTMUST00000066357,   OTTMUST00000066358,   OTTMUST00000066359
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365113,510,536 - 113,511,547 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:102717 AgrOrtholog
Ensembl Genes ENSMUSG00000029352 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000076069 ENTREZGENE
  ENSMUST00000076069.13 UniProtKB/Swiss-Prot
  ENSMUST00000117143 ENTREZGENE
  ENSMUST00000117143.8 UniProtKB/Swiss-Prot
  ENSMUST00000118226 ENTREZGENE
  ENSMUST00000118226.8 UniProtKB/Swiss-Prot
  ENSMUST00000119627 ENTREZGENE
  ENSMUST00000119627.8 UniProtKB/Swiss-Prot
  ENSMUST00000120506 ENTREZGENE
  ENSMUST00000120506.8 UniProtKB/Swiss-Prot
  ENSMUST00000131708.2 UniProtKB/TrEMBL
  ENSMUST00000136352.2 UniProtKB/TrEMBL
  ENSMUST00000140352.8 UniProtKB/TrEMBL
Gene3D-CATH Crystallins UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Beta/gamma_crystallin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  G_crystallin-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12962 UniProtKB/Swiss-Prot
MGD MGI:102717 ENTREZGENE
NCBI Gene 12962 ENTREZGENE
PANTHER BETA/GAMMA CRYSTALLIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11818:SF13 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Crystall UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Crybb3 PhenoGen
PRINTS BGCRYSTALLIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE CRYSTALLIN_BETA_GAMMA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART XTALbg UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF49695 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt CRBB3_MOUSE UniProtKB/Swiss-Prot
  D3YYW5_MOUSE UniProtKB/TrEMBL
  D3Z1U1_MOUSE UniProtKB/TrEMBL
  D3Z2L5_MOUSE UniProtKB/TrEMBL
  Q8BPQ8_MOUSE UniProtKB/TrEMBL
  Q9JJU9 ENTREZGENE