Slc30a1 (solute carrier family 30 (zinc transporter), member 1) - Rat Genome Database

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Gene: Slc30a1 (solute carrier family 30 (zinc transporter), member 1) Mus musculus
Analyze
Symbol: Slc30a1
Name: solute carrier family 30 (zinc transporter), member 1
RGD ID: 62211
MGI Page MGI
Description: Enables calcium channel inhibitor activity. Involved in intracellular monoatomic cation homeostasis; negative regulation of monoatomic ion transport; and zinc ion transport. Acts upstream of or within in utero embryonic development. Predicted to be located in several cellular components, including T-tubule; basolateral plasma membrane; and nuclear membrane. Predicted to be active in several cellular components, including Golgi apparatus; Schaffer collateral - CA1 synapse; and postsynaptic density membrane. Is expressed in several structures, including alimentary system; genitourinary system; integumental system; nervous system; and nose. Orthologous to human SLC30A1 (solute carrier family 30 member 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AI839647; C130040I11Rik; proton-coupled zinc antiporter SLC30A1; solute carrier family 30 member 1; zinc transporter 1; Znt; znT-1; Znt1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391191,638,810 - 191,645,359 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1191,638,879 - 191,645,359 (+)EnsemblGRCm39 Ensembl
GRCm381191,906,697 - 191,913,248 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1191,906,767 - 191,913,247 (+)EnsemblGRCm38mm10GRCm38
MGSCv371193,730,660 - 193,737,126 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361193,607,396 - 193,613,862 (+)NCBIMGSCv36mm8
Celera1198,856,473 - 198,862,938 (+)NCBICelera
Cytogenetic Map1H6NCBI
cM Map197.01NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
1-(5-isoquinolinesulfonyl)-2-methylpiperazine  (EXP)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-methoxyethanol  (ISO)
5-(2-methylpiperazine-1-sulfonyl)isoquinoline  (EXP)
5-aza-2'-deoxycytidine  (ISO)
acetamide  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
aldehydo-D-glucose  (ISO)
aldosterone  (ISO)
all-trans-retinoic acid  (ISO)
all-trans-retinol  (ISO)
AM-251  (ISO)
amiodarone  (ISO)
ammonium chloride  (ISO)
antimycin A  (ISO)
arsenite(3-)  (EXP,ISO)
arsenous acid  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (EXP)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
butan-1-ol  (ISO)
cadmium atom  (EXP,ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (ISO)
calcitriol  (ISO)
calcium atom  (ISO)
calcium(0)  (ISO)
cannabidiol  (EXP,ISO)
CGP 52608  (ISO)
chrysene  (EXP)
cisplatin  (ISO)
cobalt dichloride  (ISO)
colforsin daropate hydrochloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) chloride  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
CU-O LINKAGE  (ISO)
curcumin  (ISO)
D-glucose  (ISO)
D-penicillamine  (ISO)
deguelin  (ISO)
dexamethasone  (EXP)
dextran sulfate  (EXP)
diarsenic trioxide  (ISO)
dibenz[a,h]anthracene  (EXP)
dibutyl phthalate  (ISO)
dicoumarol  (EXP)
dicrotophos  (ISO)
disulfiram  (ISO)
diuron  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elesclomol  (ISO)
endosulfan  (ISO)
epoxiconazole  (EXP)
ethyl methanesulfonate  (ISO)
flurotyl  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
genistein  (ISO)
genistein 7-O-beta-D-glucoside  (ISO)
gentamycin  (ISO)
glucose  (ISO)
irinotecan  (ISO)
isotretinoin  (ISO)
ivermectin  (ISO)
lead diacetate  (EXP)
leflunomide  (ISO)
lipopolysaccharide  (EXP)
mercury atom  (ISO)
mercury dibromide  (ISO)
mercury dichloride  (ISO)
mercury(0)  (ISO)
methoxychlor  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
motexafin gadolinium  (ISO)
N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine  (ISO)
N-acetyl-L-cysteine  (ISO)
nefazodone  (ISO)
nickel dichloride  (ISO)
nitroprusside  (ISO)
ochratoxin A  (ISO)
oxaliplatin  (ISO)
p-chloromercuribenzoic acid  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
pentetic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
phorone  (ISO)
picoxystrobin  (ISO)
pirinixic acid  (EXP)
potassium chromate  (ISO)
propanal  (ISO)
protein kinase inhibitor  (ISO)
quercetin  (ISO)
quinolin-8-ol  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
silicon dioxide  (EXP)
silver atom  (EXP,ISO)
silver(0)  (EXP,ISO)
silver(1+) nitrate  (ISO)
sodium arsenite  (ISO)
spironolactone  (ISO)
staurosporine  (EXP)
sulfasalazine  (EXP)
sulindac  (ISO)
sunitinib  (ISO)
testosterone  (EXP)
tetraphene  (EXP)
thioacetamide  (ISO)
titanium dioxide  (EXP)
topotecan  (ISO)
trichostatin A  (ISO)
triptonide  (EXP)
valproic acid  (ISO)
vinclozolin  (ISO)
vorinostat  (ISO)
zidovudine  (ISO)
zinc acetate  (ISO)
zinc atom  (EXP,ISO)
zinc dichloride  (ISO)
zinc oxide  (EXP,ISO)
zinc sulfate  (EXP,ISO)
zinc(0)  (EXP,ISO)
ziram  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. MGD IEA MGD IEA
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Cloning and functional characterization of a mammalian zinc transporter that confers resistance to zinc. Palmiter RD and Findley SD, EMBO J 1995 Feb 15;14(4):639-49.
6. ZnT-2, a mammalian protein that confers resistance to zinc by facilitating vesicular sequestration. Palmiter RD, etal., EMBO J 1996 Apr 15;15(8):1784-91.
7. Mouse MP Annotation Import Pipeline RGD automated import pipeline
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:9566988   PMID:9858811   PMID:10349636   PMID:10952993   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:14681479   PMID:14704853   PMID:15257151  
PMID:15294341   PMID:15381762   PMID:15451416   PMID:15452870   PMID:15489334   PMID:16026622   PMID:16141072   PMID:16141073   PMID:16741752   PMID:17669619   PMID:18936201   PMID:20432464  
PMID:21267068   PMID:21873635   PMID:22193398   PMID:24602382   PMID:25319628   PMID:30550785   PMID:36417873   PMID:38187761  


Genomics

Comparative Map Data
Slc30a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391191,638,810 - 191,645,359 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1191,638,879 - 191,645,359 (+)EnsemblGRCm39 Ensembl
GRCm381191,906,697 - 191,913,248 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1191,906,767 - 191,913,247 (+)EnsemblGRCm38mm10GRCm38
MGSCv371193,730,660 - 193,737,126 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361193,607,396 - 193,613,862 (+)NCBIMGSCv36mm8
Celera1198,856,473 - 198,862,938 (+)NCBICelera
Cytogenetic Map1H6NCBI
cM Map197.01NCBI
SLC30A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381211,571,568 - 211,579,161 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1211,571,568 - 211,579,161 (-)EnsemblGRCh38hg38GRCh38
GRCh371211,744,910 - 211,752,503 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361209,815,004 - 209,818,722 (-)NCBINCBI36Build 36hg18NCBI36
Build 341208,136,777 - 208,140,494NCBI
Celera1184,975,478 - 184,979,196 (-)NCBICelera
Cytogenetic Map1q32.3NCBI
HuRef1182,425,777 - 182,429,495 (-)NCBIHuRef
CHM1_11213,020,769 - 213,024,487 (-)NCBICHM1_1
T2T-CHM13v2.01210,817,650 - 210,825,243 (-)NCBIT2T-CHM13v2.0
Slc30a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr813106,022,019 - 106,025,892 (+)NCBIGRCr8
mRatBN7.213103,491,037 - 103,494,910 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl13103,491,037 - 103,494,910 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx13106,010,977 - 106,014,850 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.013107,394,814 - 107,398,687 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.013104,609,816 - 104,613,689 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.013110,677,810 - 110,681,683 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl13110,677,810 - 110,681,683 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013115,236,547 - 115,240,420 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.413107,980,864 - 107,986,519 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.113108,169,967 - 108,175,623 (+)NCBI
Celera13102,913,629 - 102,934,174 (+)NCBICelera
Cytogenetic Map13q27NCBI
Slc30a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554065,639,341 - 5,668,331 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554065,662,312 - 5,668,331 (+)NCBIChiLan1.0ChiLan1.0
SLC30A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2137,823,879 - 37,831,549 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1137,789,091 - 37,796,722 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01187,139,544 - 187,147,113 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11192,002,503 - 192,009,515 (-)NCBIpanpan1.1PanPan1.1panPan2
SLC30A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.179,952,373 - 9,959,382 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl79,955,877 - 9,959,388 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha79,530,323 - 9,537,455 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.079,658,190 - 9,665,320 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl79,659,293 - 9,665,282 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.179,581,103 - 9,588,235 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.079,683,054 - 9,690,180 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.079,807,567 - 9,814,703 (-)NCBIUU_Cfam_GSD_1.0
Slc30a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934464,548,981 - 64,555,903 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365571,789,263 - 1,796,541 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365571,789,263 - 1,796,548 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC30A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9131,633,585 - 131,640,672 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19131,633,586 - 131,636,934 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29144,671,051 - 144,677,621 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC30A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12517,926,656 - 17,933,805 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2517,926,078 - 17,933,783 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605518,450,966 - 18,458,625 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc30a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477117,262,866 - 17,270,340 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477117,262,933 - 17,269,795 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Slc30a1
205 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1226
Count of miRNA genes:636
Interacting mature miRNAs:801
Transcripts:ENSMUST00000044954, ENSMUST00000161756
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1301202Yaa4_mY-linked autoimmune acceleration 4 (mouse)Not determined1158468817192468938Mouse
1300842Sle9_msystematic lupus erythematosus susceptibility 9 (mouse)Not determined1158468817192468938Mouse
11059558Lmr20c_mleishmaniasis resistance 20c (mouse)1158468817192468938Mouse
11059557Lmr20a_mleishmaniasis resistance 20a (mouse)1158468817192468938Mouse
11059556Lmr20b_mleishmaniasis resistance 20b (mouse)1158468817192468938Mouse
10402498Lmr20_mleishmaniasis resistance 20 (mouse)Not determined1158468817192468938Mouse
1301431Pcho1_mplasma cholesterol 1 (mouse)Not determined1159262573193262693Mouse
12790987Tgl5_mtriglyceride 5 (mouse)1160097157194097157Mouse
12790988Phdlc5_mplasma HDL cholesterol 5 (mouse)9160097157194097157Mouse
1300823Ath9_matherosclerosis 9 (mouse)Not determined1160112768194112883Mouse
1301632Bw8q1_mbody weight at 8 weeks QTL 1 (mouse)Not determined1161201261195154279Mouse
1301596Elnt_mescape latencies during navigation task (mouse)Not determined1162145207194111528Mouse
1301339Hdlq15_mHDL QTL 15 (mouse)Not determined1165873675195154279Mouse
1302158Fembrs5_mfemur breaking strength 5 (mouse)Not determined1167462514195154279Mouse
1559024Zit1_mzinc induced tolerance 1 (mouse)Not determined1167462514195154279Mouse
4141483Femwf7_mfemur work to failure 7 (mouse)Not determined167462514195154279Mouse
1558802Skmw6_mskeletal muscle weight 6 (mouse)Not determined1167954584195154279Mouse
1301251Scc3_mcolon tumor susceptibility 3 (mouse)Not determined1168213823195154279Mouse
1301132Mors1_mmodifier of obesity related sterility 1 (mouse)Not determined1170379500195154279Mouse
1300727Mptp1_mMPTP sensitivity 1 (mouse)Not determined1171632048192681050Mouse
1357732Tbbmd1_mtotal body bone mineral density 1 (mouse)Not determined1171983110195154279Mouse
11049575Lmr8b_mleishmaniasis resistance 8b (mouse)1172303451195154279Mouse
1301652Cpfd2_mcerebellum pattern fissures (mouse)Not determined1172303451195154279Mouse
10043863Swrl5_mSWR lupus locus 5 (mouse)Not determined1172303451195154279Mouse
12880426V25Dq2_mvitamin D inactive form serum level QTL 2 (mouse)1172532197195154279Mouse
12880429V25Dq1_mvitamin D inactive form serum level QTL 1 (mouse)1172632197195154279Mouse
1302023Orch4_mautoimmune orchitis resistance 4 (mouse)Not determined1175211318195154279Mouse
11532690Sluc37_msusceptibility to lung cancer 37 (mouse)1175468817194111528Mouse
1357692Axtq1_manxiety QTL 1 (mouse)Not determined1180832317191851043Mouse
1357620Aaj1_manxiety in A/J 1 (mouse)Not determined1180832317191851043Mouse
14700797Mencq2_mmeniscus calcification QTL 2 (mouse)1191583112192212308Mouse

Markers in Region
AI029423  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381191,912,972 - 191,913,146UniSTSGRCm38
MGSCv371193,736,851 - 193,737,025UniSTSGRCm37
Celera1198,862,663 - 198,862,837UniSTS
Cytogenetic Map1H6UniSTS
cM Map1106.0UniSTS
AI839647  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381191,913,041 - 191,913,146UniSTSGRCm38
MGSCv371193,736,920 - 193,737,025UniSTSGRCm37
Celera1198,862,732 - 198,862,837UniSTS
Cytogenetic Map1H6UniSTS
cM Map1106.0UniSTS
Whitehead/MRC_RH12440.83UniSTS
Slc30a1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1H6UniSTS
cM Map197.01UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000044954   ⟹   ENSMUSP00000042410
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1191,638,879 - 191,645,359 (+)Ensembl
GRCm38.p6 Ensembl1191,906,767 - 191,913,247 (+)Ensembl
RefSeq Acc Id: ENSMUST00000161756   ⟹   ENSMUSP00000124176
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1191,639,368 - 191,641,285 (+)Ensembl
GRCm38.p6 Ensembl1191,907,256 - 191,909,173 (+)Ensembl
RefSeq Acc Id: NM_009579   ⟹   NP_033605
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391191,638,893 - 191,645,359 (+)NCBI
GRCm381191,906,781 - 191,913,247 (+)NCBI
MGSCv371193,730,660 - 193,737,126 (+)RGD
Celera1198,856,473 - 198,862,938 (+)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006497158   ⟹   XP_006497221
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391191,638,810 - 191,641,055 (+)NCBI
GRCm381191,906,697 - 191,913,248 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_033605   ⟸   NM_009579
- UniProtKB: Q60738 (UniProtKB/Swiss-Prot),   Q3UM63 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006497221   ⟸   XM_006497158
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSMUSP00000042410   ⟸   ENSMUST00000044954
RefSeq Acc Id: ENSMUSP00000124176   ⟸   ENSMUST00000161756

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q60738-F1-model_v2 AlphaFold Q60738 1-503 view protein structure

Promoters
RGD ID:6876124
Promoter ID:EPDNEW_M1513
Type:initiation region
Name:Slc30a1_1
Description:Mus musculus solute carrier family 30 , member 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381191,906,815 - 191,906,875EPDNEW
RGD ID:6818478
Promoter ID:MM_KWN:3321
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   Spleen
Transcripts:ENSMUST00000044954,   OTTMUST00000051886
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361193,730,221 - 193,731,462 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1345281 AgrOrtholog
Ensembl Genes ENSMUSG00000037434 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000044954 ENTREZGENE
  ENSMUST00000044954.7 UniProtKB/Swiss-Prot
  ENSMUST00000161756.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1510.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Cation_efflux UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cation_efflux_CTD_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cation_efflux_TMD_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:22782 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1345281 ENTREZGENE
NCBI Gene 22782 ENTREZGENE
PANTHER FI23527P1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC TRANSPORTER 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Cation_efflux UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Slc30a1 PhenoGen
Superfamily-SCOP SSF160240 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF161111 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt F6TRQ3_MOUSE UniProtKB/TrEMBL
  Q3UM63 ENTREZGENE, UniProtKB/TrEMBL
  Q60738 ENTREZGENE, UniProtKB/Swiss-Prot